Wall clock time and date at job start Mon Mar 30 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35052 * 126.46398 * 2 1 4 4 N 1.33582 * 108.42627 * 179.74138 * 3 2 1 5 5 C 1.31649 * 109.24314 * 0.39780 * 4 3 2 6 6 C 1.47274 * 125.86120 * 179.86727 * 5 4 3 7 7 N 1.31397 * 125.74209 * 180.02562 * 6 5 4 8 8 C 1.34018 * 108.64849 * 180.17164 * 7 6 5 9 9 C 1.34667 * 107.86897 * 359.56302 * 8 7 6 10 10 C 1.50703 * 126.35502 * 180.30143 * 9 8 7 11 11 C 1.52997 * 109.47012 * 89.99865 * 10 9 8 12 12 C 1.50703 * 109.47012 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99946 * 0.02562 * 12 11 10 14 14 C 1.37879 * 120.00143 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99860 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99996 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47110 * 59.99613 * 16 14 12 18 18 H 1.48500 * 109.47336 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46984 * 299.99653 * 16 14 12 20 20 O 1.34528 * 125.74182 * 359.69170 * 6 5 4 21 21 N 1.36630 * 108.27520 * 359.60474 * 5 4 3 22 22 H 0.96998 * 126.51432 * 180.24383 * 21 5 4 23 23 H 1.09005 * 109.47059 * 270.02460 * 1 2 3 24 24 H 1.08995 * 109.47338 * 30.02444 * 1 2 3 25 25 H 1.08995 * 109.47052 * 150.02735 * 1 2 3 26 26 H 1.07992 * 125.78683 * 359.97438 * 3 2 1 27 27 H 1.08002 * 126.06960 * 179.83420 * 8 7 6 28 28 H 1.08999 * 109.47223 * 210.00406 * 10 9 8 29 29 H 1.09000 * 109.46989 * 330.00017 * 10 9 8 30 30 H 1.08999 * 109.47569 * 300.00329 * 11 10 9 31 31 H 1.09008 * 109.47094 * 60.00884 * 11 10 9 32 32 H 0.96996 * 120.00080 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0861 0.0000 4 7 3.5798 0.6725 0.0057 5 6 3.6076 -0.6437 0.0007 6 6 4.8190 -1.4811 0.0017 7 7 4.8440 -2.7948 -0.0038 8 6 6.1217 -3.1992 0.0030 9 6 6.9024 -2.1019 0.0032 10 6 8.4092 -2.0777 0.0034 11 6 8.9193 -2.0694 -1.4390 12 6 10.4261 -2.0444 -1.4388 13 1 10.9659 -2.0358 -0.5034 14 6 11.1156 -2.0326 -2.6328 15 7 10.4582 -2.0436 -3.7718 16 14 12.9833 -2.0024 -2.6325 17 1 13.4977 -3.2071 -1.9330 18 1 13.4785 -1.9943 -4.0325 19 1 13.4585 -0.7825 -1.9318 20 8 6.0863 -1.0298 0.0019 21 7 2.3195 -1.0994 0.0004 22 1 2.0354 -2.0268 0.0006 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.9805 2.1146 -0.0004 27 1 6.4645 -4.2234 0.0035 28 1 8.7581 -1.1820 0.5174 29 1 8.7868 -2.9617 0.5172 30 1 8.5704 -2.9650 -1.9530 31 1 8.5418 -1.1852 -1.9528 32 1 10.9432 -2.0349 -4.6118 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259790796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:33 Heat of formation + Delta-G solvation = 40.276915 kcal Electronic energy + Delta-G solvation = -16582.856689 eV Core-core repulsion = 13737.664353 eV Total energy + Delta-G solvation = -2845.192336 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.44749 -43.09672 -36.21483 -35.96736 -34.19204 -33.95540 -32.86326 -30.50544 -28.09905 -26.57183 -24.28498 -23.85085 -22.47986 -22.19098 -21.54433 -19.25134 -18.63972 -17.85488 -17.54003 -16.53027 -16.25312 -15.99475 -15.45046 -15.06378 -14.63387 -14.40496 -14.31242 -14.01386 -13.68875 -13.30008 -13.27838 -12.83084 -12.61716 -12.58633 -12.14982 -11.88115 -11.70141 -11.36007 -11.32977 -11.26808 -10.58147 -10.33701 -8.98225 -8.21828 -6.34939 -0.21428 0.93094 1.03214 1.42621 1.46063 1.49590 1.53923 2.11139 2.25208 2.41937 2.53754 3.12142 3.74341 3.84293 3.99656 4.06216 4.18397 4.31951 4.40751 4.57501 4.62293 4.83183 4.84354 4.99089 5.12846 5.14704 5.18253 5.42533 5.54108 5.57042 5.76490 6.13164 6.13661 6.41431 6.78959 6.81040 7.35231 8.90076 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.049373 B = 0.003828 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.980650 B = 7313.518818 C = 7530.519236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.027 3.973 3 C -0.044 4.044 4 N -0.485 5.485 5 C 0.237 3.763 6 C 0.233 3.767 7 N -0.467 5.467 8 C -0.044 4.044 9 C -0.019 4.019 10 C -0.022 4.022 11 C 0.032 3.968 12 C -0.544 4.544 13 H 0.074 0.926 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.971 3.029 17 H -0.261 1.261 18 H -0.287 1.287 19 H -0.267 1.267 20 O -0.197 6.197 21 N -0.522 5.522 22 H 0.439 0.561 23 H 0.097 0.903 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.207 0.793 27 H 0.218 0.782 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.002 0.998 31 H -0.019 1.019 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.772 1.007 9.240 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C -0.195 4.195 4 N -0.207 5.207 5 C -0.021 4.021 6 C 0.030 3.970 7 N -0.200 5.200 8 C -0.184 4.184 9 C -0.073 4.073 10 C -0.059 4.059 11 C -0.005 4.005 12 C -0.581 4.581 13 H 0.092 0.908 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.795 3.205 17 H -0.185 1.185 18 H -0.212 1.212 19 H -0.192 1.192 20 O -0.082 6.082 21 N -0.129 5.129 22 H 0.281 0.719 23 H 0.115 0.885 24 H 0.127 0.873 25 H 0.102 0.898 26 H 0.224 0.776 27 H 0.235 0.765 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.021 0.979 31 H -0.001 1.001 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.548 1.206 9.060 21.579 hybrid contribution 0.982 -0.414 -0.545 1.197 sum -18.566 0.792 8.515 20.441 Atomic orbital electron populations 1.20546 0.82228 1.05678 1.04922 1.22345 0.96590 0.85195 1.05109 1.22857 0.86398 1.01116 1.09128 1.70370 1.25536 1.07447 1.17335 1.18171 0.81621 0.88227 1.14078 1.21790 0.82190 0.87733 1.05312 1.70482 1.23566 1.07590 1.18341 1.23456 0.86506 1.01445 1.07007 1.24527 0.95524 0.84181 1.03111 1.20359 0.80980 1.04779 0.99793 1.18981 0.95568 0.95206 0.90750 1.21597 0.92110 1.51101 0.93318 0.90794 1.26046 1.04315 0.94485 0.95103 1.70116 1.37972 1.51286 0.98151 0.85409 0.78560 0.79416 0.77124 1.18522 1.21213 1.19179 1.84527 1.16810 1.37512 1.69305 1.43038 1.04142 1.11241 1.54498 0.71942 0.88462 0.87301 0.89795 0.77630 0.76519 0.90440 0.86223 0.97912 1.00094 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.44 71.24 0.74 0.25 16 2 C 0.03 0.48 7.23 41.07 0.30 0.78 16 3 C -0.04 -1.02 11.76 83.69 0.98 -0.03 16 4 N -0.48 -16.39 11.28 -189.71 -2.14 -18.53 16 5 C 0.24 7.80 8.08 136.24 1.10 8.90 16 6 C 0.23 8.88 8.22 87.14 0.72 9.60 16 7 N -0.47 -16.61 11.33 -305.28 -3.46 -20.07 16 8 C -0.04 -1.55 11.79 83.54 0.98 -0.56 16 9 C -0.02 -0.78 6.64 24.87 0.17 -0.61 16 10 C -0.02 -0.89 5.70 29.85 0.17 -0.72 16 11 C 0.03 1.70 4.96 29.85 0.15 1.85 16 12 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 13 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 14 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 15 N -0.94 -57.52 13.29 21.45 0.28 -57.24 16 16 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 O -0.20 -8.47 10.80 -9.01 -0.10 -8.57 16 21 N -0.52 -11.77 6.22 -175.87 -1.09 -12.87 16 22 H 0.44 7.63 8.96 -92.71 -0.83 6.80 16 23 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 24 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.22 6.07 8.06 -2.91 -0.02 6.05 16 28 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H -0.02 -1.17 8.14 -2.38 -0.02 -1.19 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -75.28 291.29 1.84 -73.44 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.31 Total: 8.25 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 6.01 Total: -10.21 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.41 Total: -108.71 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.10 Total: -8.57 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -75.28 1.84 -73.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259790796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.715 kcal (2) G-P(sol) polarization free energy of solvation -75.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds