Wall clock time and date at job start Mon Mar 30 2020 05:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50693 * 109.46978 * 2 1 4 4 N 1.32822 * 126.34834 * 270.28208 * 3 2 1 5 5 C 1.32018 * 109.21843 * 180.12876 * 4 3 2 6 6 C 1.47195 * 125.29241 * 179.88605 * 5 4 3 7 7 C 1.38283 * 126.43249 * 359.69731 * 6 5 4 8 8 N 1.34516 * 107.34873 * 180.02562 * 7 6 5 9 9 H 0.97001 * 125.75338 * 179.97438 * 8 7 6 10 10 N 1.39931 * 108.48495 * 0.23095 * 8 7 6 11 11 C 1.30458 * 108.96291 * 359.60711 * 10 8 7 12 12 C 1.50699 * 125.96576 * 180.14353 * 11 10 8 13 13 O 1.34579 * 109.42238 * 359.62476 * 5 4 3 14 14 C 1.35551 * 107.62059 * 0.22792 * 13 5 4 15 15 C 1.39551 * 126.78282 * 180.02562 * 14 13 5 16 16 H 1.08000 * 120.00492 * 179.97438 * 15 14 13 17 17 C 1.40134 * 120.00097 * 359.97438 * 15 14 13 18 18 N 1.30840 * 120.00136 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46839 * 359.97438 * 19 17 15 21 21 H 1.48508 * 109.47148 * 119.99807 * 19 17 15 22 22 H 1.48495 * 109.47093 * 239.99764 * 19 17 15 23 23 H 1.09002 * 109.47008 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47112 * 300.00614 * 1 2 3 25 25 H 1.09002 * 109.46208 * 60.00403 * 1 2 3 26 26 H 1.08993 * 109.47112 * 239.99386 * 2 1 3 27 27 H 1.09007 * 109.46646 * 119.99763 * 2 1 3 28 28 H 1.08000 * 126.32283 * 0.02562 * 7 6 5 29 29 H 1.09003 * 109.46918 * 270.28349 * 12 11 10 30 30 H 1.09003 * 109.46819 * 30.27939 * 12 11 10 31 31 H 1.08998 * 109.47489 * 150.27988 * 12 11 10 32 32 H 0.96991 * 120.00628 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2898 2.1647 -1.0698 5 6 2.7147 3.3526 -0.6810 6 6 3.1025 4.4528 -1.5786 7 6 3.0931 4.4269 -2.9612 8 7 3.5178 5.6298 -3.3879 9 1 3.6138 5.9011 -4.3142 10 7 3.8032 6.4216 -2.2700 11 6 3.5552 5.7344 -1.1892 12 6 3.7268 6.2198 0.2271 13 8 2.7329 3.4033 0.6638 14 6 2.3084 2.2016 1.1255 15 6 2.1733 1.8199 2.4609 16 1 1.8227 0.8283 2.7064 17 6 2.4925 2.7232 3.4836 18 7 2.9178 3.9243 3.1864 19 14 2.3123 2.2120 5.2713 20 1 1.8177 0.8135 5.3387 21 1 3.6310 2.3044 5.9479 22 1 1.3445 3.1120 5.9483 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 2.7991 3.5945 -3.5834 29 1 4.7373 5.9947 0.5684 30 1 3.5622 7.2967 0.2645 31 1 3.0052 5.7194 0.8727 32 1 3.1391 4.5495 3.8942 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827668.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:37 Heat of formation + Delta-G solvation = 36.372625 kcal Electronic energy + Delta-G solvation = -17646.694233 eV Core-core repulsion = 14801.332595 eV Total energy + Delta-G solvation = -2845.361639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.81679 -41.86965 -35.77725 -35.64048 -33.93742 -33.34259 -31.47692 -30.27213 -28.84229 -26.64467 -24.50105 -23.45753 -21.68511 -20.90968 -20.37994 -19.34835 -18.77413 -17.08481 -16.63781 -16.11008 -15.66577 -15.31358 -15.24580 -14.96481 -14.40210 -13.95870 -13.75025 -13.67132 -13.29762 -13.06286 -13.01522 -12.90812 -12.78272 -12.02871 -11.93257 -11.78020 -11.58262 -11.52632 -11.17560 -10.69057 -10.35209 -10.14346 -8.82500 -8.78138 -6.32993 0.68493 1.06569 1.39552 1.41574 1.58911 1.90657 1.95470 2.17652 2.70475 2.81929 3.17640 3.71613 3.94939 4.06358 4.37702 4.41796 4.58726 4.78412 4.79258 4.86468 4.91144 4.97908 5.05563 5.12773 5.16482 5.30421 5.46803 5.56066 5.61867 5.79462 6.23233 6.37493 6.43269 6.58486 6.67509 6.71044 7.77983 8.22922 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.020821 B = 0.008362 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.494891 B = 3347.497012 C = 4595.574114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.001 4.001 3 C -0.210 4.210 4 N -0.457 5.457 5 C 0.078 3.922 6 C -0.158 4.158 7 C 0.094 3.906 8 N -0.451 5.451 9 H 0.460 0.540 10 N -0.315 5.315 11 C 0.082 3.918 12 C -0.064 4.064 13 O -0.195 6.195 14 C 0.141 3.859 15 C -0.445 4.445 16 H 0.119 0.881 17 C 0.021 3.979 18 N -0.797 5.797 19 Si 1.001 2.999 20 H -0.247 1.247 21 H -0.265 1.265 22 H -0.265 1.265 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.208 0.792 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 0.126 -3.618 3.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.039 4.039 3 C -0.338 4.338 4 N -0.186 5.186 5 C -0.119 4.119 6 C -0.170 4.170 7 C -0.057 4.057 8 N -0.161 5.161 9 H 0.308 0.692 10 N -0.140 5.140 11 C -0.085 4.085 12 C -0.123 4.123 13 O -0.084 6.084 14 C 0.085 3.915 15 C -0.473 4.473 16 H 0.137 0.863 17 C -0.198 4.198 18 N -0.422 5.422 19 Si 0.820 3.180 20 H -0.170 1.170 21 H -0.189 1.189 22 H -0.189 1.189 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.021 1.371 -4.679 4.876 hybrid contribution -0.110 -0.424 1.161 1.241 sum -0.131 0.947 -3.518 3.646 Atomic orbital electron populations 1.21636 0.95297 1.01394 1.00459 1.19297 0.95345 0.88485 1.00762 1.21860 1.24163 1.00537 0.87277 1.69399 1.14040 1.02135 1.32977 1.22117 1.15136 0.94637 0.80046 1.17708 1.15556 0.92292 0.91490 1.22923 0.98485 0.90752 0.93543 1.45780 1.52065 1.09241 1.09018 0.69195 1.76844 1.26028 1.18813 0.92309 1.22635 0.97792 0.91714 0.96355 1.20120 1.03012 1.01482 0.87645 1.84804 1.68607 1.34456 1.20566 1.20986 0.93163 0.81616 0.95693 1.19138 1.39699 1.01662 0.86833 0.86340 1.27168 0.91608 0.93878 1.07109 1.69838 1.28478 1.05873 1.38041 0.84839 0.79116 0.80195 0.73814 1.17000 1.18919 1.18932 0.90524 0.94225 0.94432 0.92312 0.91764 0.77501 0.90925 0.89612 0.91157 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.90 71.99 0.71 -3.99 16 2 C 0.00 -0.03 6.28 29.85 0.19 0.15 16 3 C -0.21 -10.88 6.50 42.77 0.28 -10.60 16 4 N -0.46 -23.88 11.21 -289.79 -3.25 -27.13 16 5 C 0.08 4.10 8.02 87.02 0.70 4.80 16 6 C -0.16 -6.99 6.13 -20.14 -0.12 -7.12 16 7 C 0.09 3.17 12.01 84.29 1.01 4.18 16 8 N -0.45 -12.90 7.30 -56.02 -0.41 -13.30 16 9 H 0.46 8.42 8.96 -213.43 -1.91 6.51 16 10 N -0.31 -11.39 12.63 -46.61 -0.59 -11.97 16 11 C 0.08 3.39 7.27 43.54 0.32 3.71 16 12 C -0.06 -2.54 10.06 71.24 0.72 -1.82 16 13 O -0.20 -11.15 7.45 -18.03 -0.13 -11.29 16 14 C 0.14 7.84 6.82 22.95 0.16 7.99 16 15 C -0.44 -22.90 9.07 23.05 0.21 -22.69 16 16 H 0.12 5.60 7.33 -2.91 -0.02 5.58 16 17 C 0.02 1.02 5.50 85.30 0.47 1.49 16 18 N -0.80 -40.29 12.04 21.87 0.26 -40.03 16 19 Si 1.00 35.45 29.56 68.60 2.03 37.48 16 20 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 21 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 2.54 7.59 -2.38 -0.02 2.52 16 28 H 0.21 5.75 8.06 -2.91 -0.02 5.73 16 29 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.07 3.25 6.72 -2.39 -0.02 3.23 16 32 H 0.30 13.29 8.30 -92.71 -0.77 12.52 16 Total: -1.00 -67.18 284.86 1.79 -65.40 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.76 Total: 24.75 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: 4.63 Total: -23.90 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -3.98 Total: -92.44 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.13 Total: -11.29 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -67.18 1.79 -65.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827668.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.769 kcal (2) G-P(sol) polarization free energy of solvation -67.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds