Wall clock time and date at job start Mon Mar 30 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35948 * 116.99957 * 2 1 4 4 C 1.38396 * 120.11358 * 359.89911 * 3 2 1 5 5 C 1.38641 * 120.41552 * 180.02562 * 4 3 2 6 6 C 1.37709 * 120.46843 * 0.03925 * 5 4 3 7 7 C 1.39673 * 119.82782 * 359.97438 * 6 5 4 8 8 N 1.36062 * 133.76328 * 180.25746 * 7 6 5 9 9 C 1.29915 * 108.80850 * 180.14935 * 8 7 6 10 10 C 1.50697 * 124.86433 * 179.87637 * 9 8 7 11 11 C 1.52997 * 109.47466 * 89.69476 * 10 9 8 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47094 * 90.00289 * 16 14 12 18 18 H 1.48505 * 109.47195 * 210.00171 * 16 14 12 19 19 H 1.48493 * 109.47449 * 330.00136 * 16 14 12 20 20 O 1.34197 * 110.26784 * 359.60850 * 9 8 7 21 21 C 1.35173 * 108.14391 * 0.24172 * 20 9 8 22 22 H 1.08994 * 109.47369 * 300.00393 * 1 2 3 23 23 H 1.09000 * 109.46568 * 60.00804 * 1 2 3 24 24 H 1.08994 * 109.47067 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.79374 * 0.04167 * 4 3 2 26 26 H 1.08001 * 119.77153 * 180.02562 * 5 4 3 27 27 H 1.07993 * 120.08528 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47120 * 329.69229 * 10 9 8 29 29 H 1.08998 * 109.46862 * 209.70031 * 10 9 8 30 30 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 31 31 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 32 32 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2948 2.3735 -0.0021 5 6 1.9177 3.6121 -0.0027 6 6 3.2918 3.7027 -0.0019 7 6 4.0647 2.5393 -0.0001 8 7 5.4039 2.2991 0.0054 9 6 5.5992 1.0148 0.0014 10 6 6.9511 0.3490 0.0027 11 6 7.4082 0.1254 1.4455 12 6 8.7599 -0.5410 1.4467 13 1 9.2446 -0.7807 0.5119 14 6 9.3782 -0.8438 2.6414 15 7 8.7881 -0.5515 3.7797 16 14 11.0539 -1.6691 2.6428 17 1 12.1166 -0.6319 2.6414 18 1 11.1885 -2.5140 3.8566 19 1 11.1889 -2.5177 1.4317 20 8 4.4245 0.3660 0.0018 21 6 3.4350 1.2869 0.0010 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 0.2163 2.3152 -0.0031 26 1 1.3211 4.5124 -0.0039 27 1 3.7705 4.6707 -0.0028 28 1 7.6704 0.9862 -0.5118 29 1 6.8840 -0.6105 -0.5101 30 1 6.6889 -0.5119 1.9600 31 1 7.4753 1.0850 1.9582 32 1 9.2229 -0.7648 4.6202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:15 Heat of formation + Delta-G solvation = -34.161067 kcal Electronic energy + Delta-G solvation = -16966.995237 eV Core-core repulsion = 14086.282276 eV Total energy + Delta-G solvation = -2880.712960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.31739 -40.66269 -38.07523 -36.34029 -35.32609 -33.55477 -31.25743 -30.38382 -28.36086 -27.42310 -24.47562 -24.05630 -22.77286 -22.12604 -19.36442 -19.05102 -18.68150 -17.89419 -17.47342 -16.60845 -16.42531 -16.41287 -15.85167 -15.18465 -14.80391 -14.38437 -14.24424 -13.62619 -13.52983 -13.38428 -12.88206 -12.83126 -12.79342 -12.50044 -12.32803 -12.02671 -11.89984 -11.73060 -11.50693 -11.35959 -10.59699 -9.74404 -9.09618 -8.22575 -6.35979 -0.36769 0.16425 1.30634 1.43359 1.45831 1.46448 1.57339 2.15455 2.41400 2.57054 2.82851 3.12007 3.64346 3.80681 3.84762 4.18086 4.20256 4.36212 4.40190 4.42015 4.49817 4.57700 4.72689 4.75179 4.95297 5.03425 5.22031 5.31154 5.38022 5.44445 5.58211 5.74031 6.09722 6.20269 6.57705 6.79099 7.34255 8.90289 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.037049 B = 0.004566 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.572721 B = 6130.484890 C = 6504.238795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.343 6.343 3 C 0.146 3.854 4 C -0.182 4.182 5 C -0.059 4.059 6 C -0.119 4.119 7 C 0.037 3.963 8 N -0.515 5.515 9 C 0.268 3.732 10 C -0.017 4.017 11 C 0.036 3.964 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.257 1.257 20 O -0.225 6.225 21 C -0.070 4.070 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.116 0.884 25 H 0.187 0.813 26 H 0.189 0.811 27 H 0.152 0.848 28 H 0.116 0.884 29 H 0.105 0.895 30 H -0.010 1.010 31 H -0.006 1.006 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 5.891 -9.211 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.257 6.257 3 C 0.099 3.901 4 C -0.201 4.201 5 C -0.078 4.078 6 C -0.138 4.138 7 C -0.075 4.075 8 N -0.246 5.246 9 C 0.058 3.942 10 C -0.055 4.055 11 C -0.002 4.002 12 C -0.580 4.580 13 H 0.096 0.904 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.180 1.180 20 O -0.117 6.117 21 C -0.120 4.120 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.134 0.866 25 H 0.204 0.796 26 H 0.206 0.794 27 H 0.169 0.831 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.009 0.991 31 H 0.012 0.988 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.018 6.117 -9.038 21.065 hybrid contribution 0.341 -1.003 0.547 1.192 sum -17.677 5.115 -8.492 20.267 Atomic orbital electron populations 1.23509 0.75027 1.06037 1.03319 1.86151 1.24776 1.26249 1.88539 1.17970 0.85430 0.87286 0.99395 1.21527 1.01744 0.89607 1.07209 1.21337 0.92484 0.98886 0.95062 1.20628 0.93777 0.95598 1.03834 1.20367 0.88679 0.94835 1.03647 1.70707 1.16050 1.14762 1.23106 1.27280 0.88589 0.86603 0.91749 1.20528 0.83146 1.00742 1.01066 1.18925 0.95954 0.95500 0.89805 1.21565 1.03176 1.39607 0.93616 0.90389 1.26069 1.02545 0.96315 0.94972 1.70134 1.40571 1.48665 0.98233 0.85291 0.78329 0.78414 0.78067 1.19665 1.21030 1.18037 1.84527 1.15178 1.37540 1.74422 1.20205 0.89645 0.88615 1.13536 0.90621 0.90151 0.86585 0.79571 0.79383 0.83053 0.86623 0.87696 0.99133 0.98756 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -9.63 10.50 -92.96 -0.98 -10.61 16 3 C 0.15 4.35 6.69 22.51 0.15 4.50 16 4 C -0.18 -3.55 9.04 22.40 0.20 -3.35 16 5 C -0.06 -1.08 10.01 22.24 0.22 -0.86 16 6 C -0.12 -3.24 10.09 22.49 0.23 -3.01 16 7 C 0.04 1.40 7.24 39.31 0.28 1.68 16 8 N -0.52 -22.74 11.34 -296.34 -3.36 -26.09 16 9 C 0.27 11.99 7.49 88.39 0.66 12.65 16 10 C -0.02 -0.74 5.78 29.85 0.17 -0.57 16 11 C 0.04 2.00 4.95 29.85 0.15 2.15 16 12 C -0.54 -30.66 9.11 25.60 0.23 -30.43 16 13 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 16 Si 0.98 44.06 29.54 68.60 2.03 46.09 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 20 O -0.22 -10.07 10.77 -10.26 -0.11 -10.18 16 21 C -0.07 -2.76 7.37 22.94 0.17 -2.59 16 22 H 0.08 0.78 7.66 -2.39 -0.02 0.76 16 23 H 0.08 0.74 7.66 -2.39 -0.02 0.72 16 24 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.19 1.84 6.28 -2.91 -0.02 1.82 16 26 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 27 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.12 4.66 8.14 -2.39 -0.02 4.64 16 29 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -77.15 284.28 3.04 -74.11 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.13 Total: 2.68 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.05 Total: -18.11 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.07 Total: -83.98 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.09 Total: -20.79 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -77.15 3.04 -74.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.948 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds