Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47256 * 2 1 4 4 C 1.50700 * 109.47387 * 120.00337 * 2 1 3 5 5 N 1.35652 * 125.36033 * 299.99848 * 4 2 1 6 6 H 0.96995 * 124.69867 * 359.97438 * 5 4 2 7 7 C 1.38147 * 110.61196 * 180.02562 * 5 4 2 8 8 C 1.39151 * 132.78321 * 180.02562 * 7 5 4 9 9 C 1.37883 * 120.02308 * 179.29383 * 8 7 5 10 10 C 1.38634 * 120.64732 * 0.59222 * 9 8 7 11 11 C 1.38139 * 120.21947 * 359.61790 * 10 9 8 12 12 F 1.35099 * 120.17527 * 180.02562 * 11 10 9 13 13 C 1.39390 * 119.64252 * 0.02562 * 11 10 9 14 14 C 1.38912 * 125.36567 * 120.00010 * 4 2 1 15 15 C 1.40886 * 126.93508 * 359.97438 * 14 4 2 16 16 H 1.08001 * 120.00341 * 320.74082 * 15 14 4 17 17 C 1.39725 * 119.99735 * 140.73434 * 15 14 4 18 18 N 1.31060 * 120.00323 * 340.67374 * 17 15 14 19 19 Si 1.86804 * 119.99742 * 160.94541 * 17 15 14 20 20 H 1.48501 * 109.47022 * 89.99931 * 19 17 15 21 21 H 1.48491 * 109.47262 * 210.00238 * 19 17 15 22 22 H 1.48498 * 109.47115 * 330.00165 * 19 17 15 23 23 H 1.09003 * 109.47310 * 60.00032 * 1 2 3 24 24 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47496 * 299.99986 * 1 2 3 26 26 H 1.09007 * 109.47156 * 240.00665 * 2 1 3 27 27 H 1.08998 * 109.47161 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47130 * 300.00531 * 3 2 1 29 29 H 1.08998 * 109.46599 * 60.00044 * 3 2 1 30 30 H 1.08002 * 119.98252 * 359.97438 * 8 7 5 31 31 H 1.07999 * 119.67470 * 180.21662 * 9 8 7 32 32 H 1.08001 * 119.88937 * 179.60201 * 10 9 8 33 33 H 0.96996 * 119.99881 * 185.55888 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7726 -0.3431 2.5101 6 1 1.2328 0.4209 2.7665 7 6 2.3842 -1.2070 3.3978 8 6 2.4233 -1.2626 4.7877 9 6 3.1197 -2.2717 5.4184 10 6 3.7963 -3.2313 4.6812 11 6 3.7734 -3.1912 3.3005 12 9 4.4325 -4.1270 2.5830 13 6 3.0665 -2.1800 2.6519 14 6 2.8344 -1.8447 1.2328 15 6 3.3239 -2.5377 0.1081 16 1 2.6943 -2.6732 -0.7589 17 6 4.6239 -3.0497 0.1143 18 7 5.5071 -2.5852 0.9639 19 14 5.1053 -4.3910 -1.0935 20 1 5.6210 -3.7720 -2.3409 21 1 6.1609 -5.2440 -0.4911 22 1 3.9165 -5.2232 -1.4087 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.8988 -0.5215 5.3724 31 1 3.1434 -2.3115 6.4974 32 1 4.3432 -4.0126 5.1879 33 1 6.4294 -2.8818 0.9155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259850877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -7.482275 kcal Electronic energy + Delta-G solvation = -18099.519696 eV Core-core repulsion = 15232.336404 eV Total energy + Delta-G solvation = -2867.183291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -47.40478 -39.79950 -36.14676 -33.70582 -33.38028 -30.29947 -28.25012 -27.70842 -26.58156 -24.76107 -22.19831 -21.22876 -19.90828 -18.83148 -17.22577 -16.10818 -15.12496 -14.83921 -14.74375 -14.23559 -14.21680 -13.79562 -13.60027 -13.16491 -12.65401 -12.52174 -12.23456 -11.87939 -11.72752 -11.32867 -11.15135 -10.86391 -10.64981 -10.57126 -10.48450 -10.21547 -10.12452 -9.93312 -9.62975 -8.81162 -8.00447 -7.10365 -6.55150 -6.28021 -3.98499 2.16841 2.57229 3.14970 3.26806 3.30908 3.99277 4.21660 4.34552 4.80976 5.35764 5.51470 5.57419 5.65314 5.71391 5.89136 5.98956 6.06688 6.09365 6.25687 6.27158 6.47999 6.51130 6.59577 6.70169 6.89328 6.93003 7.02766 7.19277 7.33801 7.40125 7.60417 7.64842 8.12783 8.33556 8.65846 8.77205 9.12158 9.19180 10.57846 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.013241 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.328011 B = 2114.129409 C = 3594.827344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.001 3.999 3 C -0.139 4.139 4 C -0.107 4.107 5 N -0.577 5.577 6 H 0.393 0.607 7 C 0.118 3.882 8 C -0.178 4.178 9 C -0.082 4.082 10 C -0.244 4.244 11 C 0.197 3.803 12 F -0.130 7.130 13 C -0.143 4.143 14 C 0.093 3.907 15 C -0.471 4.471 16 H 0.075 0.925 17 C 0.091 3.909 18 N -0.803 5.803 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 3.223 2.448 6.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 C -0.196 4.196 4 C -0.210 4.210 5 N -0.179 5.179 6 H 0.227 0.773 7 C 0.006 3.994 8 C -0.200 4.200 9 C -0.101 4.101 10 C -0.265 4.265 11 C 0.177 3.823 12 F -0.108 7.108 13 C -0.150 4.150 14 C 0.087 3.913 15 C -0.503 4.503 16 H 0.093 0.907 17 C -0.125 4.125 18 N -0.430 5.430 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.204 1.204 22 H -0.189 1.189 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.741 3.228 2.431 6.230 hybrid contribution 0.312 -0.400 -0.354 0.618 sum -4.429 2.828 2.078 5.651 Atomic orbital electron populations 1.21872 0.96851 1.01267 0.99941 1.19238 0.93125 0.94121 0.95384 1.21814 1.01686 0.96404 0.99706 1.20141 1.16820 1.01081 0.82954 1.40849 1.46147 1.26043 1.04813 0.77327 1.17863 0.98107 0.93077 0.90368 1.19717 1.07545 1.02111 0.90592 1.20173 0.97698 0.94201 0.98040 1.20491 1.09832 1.04339 0.91876 1.17044 0.90687 0.86557 0.88024 1.91429 1.78055 1.62735 1.78597 1.19321 1.03205 0.96596 0.95882 1.17645 0.93116 0.91063 0.89440 1.18423 0.98159 1.33188 1.00554 0.90674 1.25543 0.96317 0.95413 0.95232 1.69812 1.02903 1.37217 1.33038 0.86514 0.78903 0.81997 0.80393 1.20165 1.20422 1.18860 0.93607 0.92787 0.94080 0.89417 0.92379 0.93716 0.94198 0.87812 0.86874 0.86890 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.17 37.15 0.34 -1.89 16 2 C 0.00 0.01 3.28 -91.77 -0.30 -0.29 16 3 C -0.14 -2.29 9.18 37.16 0.34 -1.95 16 4 C -0.11 -2.39 5.74 -80.65 -0.46 -2.85 16 5 N -0.58 -11.82 5.99 -6.14 -0.04 -11.86 16 6 H 0.39 6.64 8.96 -40.82 -0.37 6.27 16 7 C 0.12 2.64 7.23 -83.90 -0.61 2.03 16 8 C -0.18 -3.45 10.07 -39.37 -0.40 -3.84 16 9 C -0.08 -1.54 10.01 -39.57 -0.40 -1.93 16 10 C -0.24 -5.18 10.02 -39.47 -0.40 -5.57 16 11 C 0.20 4.93 6.86 -39.19 -0.27 4.66 16 12 F -0.13 -3.43 13.93 2.25 0.03 -3.40 16 13 C -0.14 -3.67 5.78 -104.85 -0.61 -4.28 16 14 C 0.09 2.45 5.58 -104.80 -0.58 1.87 16 15 C -0.47 -12.72 8.62 -38.03 -0.33 -13.05 16 16 H 0.08 1.96 7.72 -52.49 -0.41 1.55 16 17 C 0.09 2.42 3.90 -17.33 -0.07 2.36 16 18 N -0.80 -22.14 10.76 55.54 0.60 -21.54 16 19 Si 0.90 20.28 29.60 -169.99 -5.03 15.25 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 1.77 7.32 -51.92 -0.38 1.39 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.11 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -29.02 282.37 -8.01 -37.03 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.09 Total: 5.01 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -3.73 Total: -24.74 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.56 Total: -33.40 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.03 Total: -3.40 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.02 -8.01 -37.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.546 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds