Wall clock time and date at job start Mon Mar 30 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47256 * 2 1 4 4 C 1.50700 * 109.47387 * 120.00337 * 2 1 3 5 5 N 1.35652 * 125.36033 * 299.99848 * 4 2 1 6 6 H 0.96995 * 124.69867 * 359.97438 * 5 4 2 7 7 C 1.38147 * 110.61196 * 180.02562 * 5 4 2 8 8 C 1.39151 * 132.78321 * 180.02562 * 7 5 4 9 9 C 1.37883 * 120.02308 * 179.29383 * 8 7 5 10 10 C 1.38634 * 120.64732 * 0.59222 * 9 8 7 11 11 C 1.38139 * 120.21947 * 359.61790 * 10 9 8 12 12 F 1.35099 * 120.17527 * 180.02562 * 11 10 9 13 13 C 1.39390 * 119.64252 * 0.02562 * 11 10 9 14 14 C 1.38912 * 125.36567 * 120.00010 * 4 2 1 15 15 C 1.40886 * 126.93508 * 359.97438 * 14 4 2 16 16 H 1.08001 * 120.00341 * 320.74082 * 15 14 4 17 17 C 1.39725 * 119.99735 * 140.73434 * 15 14 4 18 18 N 1.31060 * 120.00323 * 340.67374 * 17 15 14 19 19 Si 1.86804 * 119.99742 * 160.94541 * 17 15 14 20 20 H 1.48501 * 109.47022 * 89.99931 * 19 17 15 21 21 H 1.48491 * 109.47262 * 210.00238 * 19 17 15 22 22 H 1.48498 * 109.47115 * 330.00165 * 19 17 15 23 23 H 1.09003 * 109.47310 * 60.00032 * 1 2 3 24 24 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47496 * 299.99986 * 1 2 3 26 26 H 1.09007 * 109.47156 * 240.00665 * 2 1 3 27 27 H 1.08998 * 109.47161 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47130 * 300.00531 * 3 2 1 29 29 H 1.08998 * 109.46599 * 60.00044 * 3 2 1 30 30 H 1.08002 * 119.98252 * 359.97438 * 8 7 5 31 31 H 1.07999 * 119.67470 * 180.21662 * 9 8 7 32 32 H 1.08001 * 119.88937 * 179.60201 * 10 9 8 33 33 H 0.96996 * 119.99881 * 185.55888 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7726 -0.3431 2.5101 6 1 1.2328 0.4209 2.7665 7 6 2.3842 -1.2070 3.3978 8 6 2.4233 -1.2626 4.7877 9 6 3.1197 -2.2717 5.4184 10 6 3.7963 -3.2313 4.6812 11 6 3.7734 -3.1912 3.3005 12 9 4.4325 -4.1270 2.5830 13 6 3.0665 -2.1800 2.6519 14 6 2.8344 -1.8447 1.2328 15 6 3.3239 -2.5377 0.1081 16 1 2.6943 -2.6732 -0.7589 17 6 4.6239 -3.0497 0.1143 18 7 5.5071 -2.5852 0.9639 19 14 5.1053 -4.3910 -1.0935 20 1 5.6210 -3.7720 -2.3409 21 1 6.1609 -5.2440 -0.4911 22 1 3.9165 -5.2232 -1.4087 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.8988 -0.5215 5.3724 31 1 3.1434 -2.3115 6.4974 32 1 4.3432 -4.0126 5.1879 33 1 6.4294 -2.8818 0.9155 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259850877.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:09 Heat of formation + Delta-G solvation = -23.522242 kcal Electronic energy + Delta-G solvation = -18100.215241 eV Core-core repulsion = 15232.336404 eV Total energy + Delta-G solvation = -2867.878837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.26992 -41.51226 -37.76074 -35.30105 -35.17356 -32.08101 -29.95549 -29.41336 -27.88791 -26.62390 -23.79080 -22.89733 -21.64547 -20.52779 -18.95354 -17.95283 -16.81669 -16.64111 -16.45610 -16.08266 -15.93406 -15.34963 -15.14300 -14.82507 -14.39177 -14.10196 -13.67025 -13.59321 -13.10308 -12.97171 -12.95448 -12.61958 -12.23348 -12.17853 -12.09964 -11.79445 -11.69865 -11.53040 -11.41717 -10.70667 -9.79793 -8.78712 -8.46045 -8.09126 -5.93367 0.46891 0.90351 1.32809 1.39749 1.49330 2.16840 2.37476 2.70197 3.06052 3.45897 3.88487 4.07334 4.23409 4.27280 4.41949 4.47602 4.59964 4.77625 4.84532 4.90684 4.94778 5.01357 5.11042 5.24376 5.37265 5.45088 5.50653 5.54192 5.57329 5.71374 5.85242 5.88527 6.37893 6.43930 6.78593 7.07231 7.24524 7.36313 8.67006 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.013241 C = 0.007787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.328011 B = 2114.129409 C = 3594.827344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.130 4.130 4 C -0.075 4.075 5 N -0.566 5.566 6 H 0.414 0.586 7 C 0.100 3.900 8 C -0.162 4.162 9 C -0.078 4.078 10 C -0.235 4.235 11 C 0.145 3.855 12 F -0.152 7.152 13 C -0.181 4.181 14 C 0.025 3.975 15 C -0.500 4.500 16 H 0.065 0.935 17 C 0.053 3.947 18 N -0.841 5.841 19 Si 0.951 3.049 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.265 1.265 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.133 0.867 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 4.943 4.058 9.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.026 4.026 3 C -0.188 4.188 4 C -0.180 4.180 5 N -0.169 5.169 6 H 0.251 0.749 7 C -0.012 4.012 8 C -0.183 4.183 9 C -0.097 4.097 10 C -0.256 4.256 11 C 0.125 3.875 12 F -0.130 7.130 13 C -0.188 4.188 14 C 0.020 3.980 15 C -0.532 4.532 16 H 0.083 0.917 17 C -0.159 4.159 18 N -0.470 5.470 19 Si 0.774 3.226 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.181 0.819 32 H 0.151 0.849 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.494 4.969 4.059 9.129 hybrid contribution 0.701 -0.810 -0.707 1.284 sum -5.793 4.160 3.352 7.880 Atomic orbital electron populations 1.21765 0.93820 1.01091 1.02264 1.19390 0.95556 0.94985 0.92686 1.21726 0.99984 0.94928 1.02152 1.20702 1.13110 0.99360 0.84859 1.40771 1.45961 1.26348 1.03826 0.74866 1.18261 0.98342 0.92801 0.91758 1.20258 1.06169 1.02521 0.89337 1.20749 0.95945 0.92659 1.00348 1.20921 1.09063 1.05120 0.90477 1.17618 0.92832 0.87393 0.89617 1.91354 1.78799 1.63495 1.79374 1.19690 1.04615 0.98155 0.96322 1.18065 0.96321 0.93503 0.90143 1.18547 0.98610 1.35086 1.01003 0.91674 1.26141 0.96122 0.96880 0.96788 1.69892 1.02848 1.39074 1.35197 0.85675 0.78286 0.79624 0.78972 1.18771 1.20599 1.18946 0.90704 0.94260 0.92327 0.91689 0.94994 0.90651 0.92379 0.83401 0.81884 0.84911 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.17 71.98 0.66 -3.16 16 2 C -0.01 -0.24 3.28 -11.54 -0.04 -0.28 16 3 C -0.13 -4.03 9.18 71.98 0.66 -3.37 16 4 C -0.07 -3.36 5.74 42.13 0.24 -3.12 16 5 N -0.57 -22.17 5.99 -173.34 -1.04 -23.21 16 6 H 0.41 12.56 8.96 -92.71 -0.83 11.73 16 7 C 0.10 4.34 7.23 38.87 0.28 4.62 16 8 C -0.16 -5.64 10.07 22.40 0.23 -5.41 16 9 C -0.08 -2.63 10.01 22.28 0.22 -2.41 16 10 C -0.23 -9.67 10.02 22.34 0.22 -9.45 16 11 C 0.15 7.47 6.86 22.52 0.15 7.63 16 12 F -0.15 -8.46 13.93 44.97 0.63 -7.84 16 13 C -0.18 -9.52 5.78 -20.01 -0.12 -9.64 16 14 C 0.03 1.40 5.58 -19.98 -0.11 1.28 16 15 C -0.50 -28.59 8.62 23.28 0.20 -28.39 16 16 H 0.07 3.64 7.72 -2.91 -0.02 3.62 16 17 C 0.05 2.94 3.90 85.17 0.33 3.27 16 18 N -0.84 -49.08 10.76 21.80 0.23 -48.84 16 19 Si 0.95 43.80 29.60 68.60 2.03 45.83 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 2.68 7.32 -2.38 -0.02 2.66 16 27 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 31 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -68.04 282.37 5.09 -62.95 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.29 Total: 19.54 kcal Atomic # 6 Polarization: -51.37 SS G_CDS: 2.94 Total: -48.43 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.80 Total: -72.05 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 0.63 Total: -7.84 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.04 5.09 -62.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259850877.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.431 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds