Wall clock time and date at job start Mon Mar 30 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34275 * 126.38159 * 2 1 4 4 N 1.34518 * 107.76547 * 179.97438 * 3 2 1 5 5 C 1.30874 * 108.63981 * 0.02562 * 4 3 2 6 6 N 1.39145 * 125.68445 * 180.02562 * 5 4 3 7 7 C 1.35922 * 126.10738 * 359.68504 * 6 5 4 8 8 C 1.35277 * 107.59958 * 179.84033 * 7 6 5 9 9 C 1.39977 * 107.97375 * 0.42983 * 8 7 6 10 10 C 1.50696 * 125.80735 * 179.71365 * 9 8 7 11 11 C 1.53006 * 109.46999 * 125.00098 * 10 9 8 12 12 C 1.50696 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99721 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99691 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99980 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47010 * 90.00251 * 16 14 12 18 18 H 1.48497 * 109.46928 * 210.00321 * 16 14 12 19 19 H 1.48504 * 109.47281 * 330.00112 * 16 14 12 20 20 N 1.30821 * 108.37902 * 359.72990 * 9 8 7 21 21 O 1.34190 * 108.62228 * 359.97438 * 5 4 3 22 22 H 1.08997 * 109.47265 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47369 * 299.99942 * 1 2 3 24 24 H 1.09003 * 109.47496 * 59.99934 * 1 2 3 25 25 H 1.07994 * 126.11643 * 359.97438 * 3 2 1 26 26 H 1.08003 * 126.20193 * 359.97438 * 7 6 5 27 27 H 1.08001 * 126.01312 * 180.16288 * 8 7 6 28 28 H 1.08997 * 109.47321 * 244.99540 * 10 9 8 29 29 H 1.09000 * 109.47535 * 5.00309 * 10 9 8 30 30 H 1.09005 * 109.46904 * 299.99841 * 11 10 9 31 31 H 1.09000 * 109.47253 * 59.99474 * 11 10 9 32 32 H 0.97000 * 119.99912 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3035 1.0810 0.0000 4 7 3.5783 0.6516 0.0006 5 6 3.5788 -0.6571 0.0004 6 7 4.7094 -1.4683 0.0013 7 6 6.0003 -1.0431 -0.0034 8 6 6.7923 -2.1398 0.0031 9 6 5.9657 -3.2695 0.0021 10 6 6.4313 -4.7027 0.0019 11 6 5.8012 -5.4438 1.1828 12 6 6.2663 -6.8772 1.1822 13 1 6.9433 -7.2250 0.4160 14 6 5.8268 -7.7450 2.1594 15 7 6.2331 -8.9958 2.1592 16 14 4.6553 -7.1438 3.4843 17 1 3.2543 -7.3375 3.0314 18 1 4.8828 -7.9144 4.7331 19 1 4.8974 -5.7014 3.7417 20 7 4.7202 -2.8692 0.0011 21 8 2.3074 -1.0862 0.0002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.9787 2.1110 -0.0004 26 1 6.3335 -0.0158 -0.0090 27 1 7.8723 -2.1432 0.0041 28 1 6.1311 -5.1821 -0.9298 29 1 7.5172 -4.7320 0.0922 30 1 6.1014 -4.9644 2.1146 31 1 4.7153 -5.4145 1.0926 32 1 5.9242 -9.6062 2.8468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259857786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:45 Heat of formation + Delta-G solvation = 106.880467 kcal Electronic energy + Delta-G solvation = -16796.368156 eV Core-core repulsion = 13954.063967 eV Total energy + Delta-G solvation = -2842.304189 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.61634 -41.21997 -35.25129 -34.64064 -33.22677 -32.04841 -30.59755 -30.01990 -26.98556 -25.44215 -23.41766 -22.09441 -21.13419 -20.64861 -19.34370 -18.58372 -17.29884 -16.77117 -16.02988 -14.92319 -14.70078 -14.21942 -14.16289 -13.89959 -13.48596 -13.42480 -13.15912 -12.68452 -12.58367 -12.46259 -11.77737 -11.50224 -11.10306 -10.88362 -10.74771 -10.41049 -9.97049 -9.70654 -9.63456 -9.20348 -9.06797 -8.51446 -8.17613 -6.03145 -4.01259 0.79977 1.37416 1.84764 2.68124 2.73376 2.88094 3.34749 3.41277 3.47798 4.31924 4.41459 4.48368 4.68089 4.76240 4.95260 5.07489 5.12118 5.31675 5.32420 5.55102 5.67364 5.74401 5.84272 5.94088 6.25761 6.33717 6.50260 6.83351 6.91919 7.23453 7.29707 7.42699 7.78974 7.81451 8.52666 9.00967 9.59732 11.10034 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.005165 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.953789 B = 5419.638209 C = 6223.293938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.052 4.052 3 C -0.021 4.021 4 N -0.492 5.492 5 C 0.453 3.547 6 N -0.315 5.315 7 C 0.080 3.920 8 C -0.242 4.242 9 C 0.119 3.881 10 C -0.032 4.032 11 C -0.008 4.008 12 C -0.521 4.521 13 H 0.075 0.925 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.266 1.266 20 N -0.275 5.275 21 O -0.188 6.188 22 H 0.080 0.920 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.193 0.807 26 H 0.186 0.814 27 H 0.166 0.834 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.017 0.983 31 H 0.019 0.981 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 21.249 -4.754 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C -0.160 4.160 4 N -0.228 5.228 5 C 0.158 3.842 6 N -0.099 5.099 7 C -0.058 4.058 8 C -0.270 4.270 9 C -0.051 4.051 10 C -0.071 4.071 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.093 0.907 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 N -0.093 5.093 21 O -0.073 6.073 22 H 0.099 0.901 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.210 0.790 26 H 0.203 0.797 27 H 0.184 0.816 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.172 21.117 -4.656 23.117 hybrid contribution -0.401 0.113 0.800 0.902 sum -8.573 21.230 -3.856 23.218 Atomic orbital electron populations 1.20298 0.83303 1.04751 1.03899 1.23429 0.94973 0.83577 1.08653 1.22946 0.86483 1.00531 1.06078 1.70648 1.23824 1.04945 1.23380 1.20422 0.78623 0.84757 1.00379 1.44461 1.00636 1.04949 1.59843 1.22779 0.80783 1.01136 1.01091 1.21772 1.01227 0.90349 1.13667 1.23441 0.89567 0.98744 0.93394 1.20297 1.00783 0.84051 1.01992 1.19560 0.96283 0.95945 0.92820 1.21097 1.29109 0.92517 1.13203 0.90666 1.24966 0.95956 0.94692 0.97544 1.69906 1.45052 1.04281 1.34907 0.86817 0.81782 0.79374 0.81592 1.20250 1.21355 1.19083 1.77853 1.21349 0.84025 1.26043 1.84477 1.15597 1.36396 1.70811 0.90067 0.89095 0.89099 0.78985 0.79744 0.81641 0.90042 0.89771 0.96454 0.96218 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.43 36.01 0.38 -0.05 16 2 C -0.05 -0.60 7.38 -35.70 -0.26 -0.86 16 3 C -0.02 -0.23 11.79 -17.77 -0.21 -0.44 16 4 N -0.49 -7.07 11.15 -14.25 -0.16 -7.22 16 5 C 0.45 7.49 9.01 -86.18 -0.78 6.71 16 6 N -0.31 -5.52 3.78 -13.68 -0.05 -5.57 16 7 C 0.08 1.14 11.34 -16.79 -0.19 0.95 16 8 C -0.24 -3.57 10.72 -39.99 -0.43 -3.99 16 9 C 0.12 2.21 6.49 -82.37 -0.53 1.68 16 10 C -0.03 -0.63 5.73 -27.88 -0.16 -0.79 16 11 C -0.01 -0.20 4.00 -27.88 -0.11 -0.31 16 12 C -0.52 -14.90 9.66 -34.44 -0.33 -15.24 16 13 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 16 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 20 N -0.27 -5.55 12.48 33.69 0.42 -5.12 16 21 O -0.19 -3.02 10.79 4.30 0.05 -2.97 16 22 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 24 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.19 1.97 8.06 -52.48 -0.42 1.55 16 27 H 0.17 1.88 8.06 -52.49 -0.42 1.45 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.08 1.51 8.12 -51.93 -0.42 1.09 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -34.83 288.35 -5.76 -40.59 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.73 Total: -4.27 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -2.73 Total: -10.39 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.98 Total: -45.15 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.05 Total: -2.97 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.83 -5.76 -40.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259857786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.468 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds