Wall clock time and date at job start Mon Mar 30 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34275 * 126.38159 * 2 1 4 4 N 1.34518 * 107.76547 * 179.97438 * 3 2 1 5 5 C 1.30874 * 108.63981 * 0.02562 * 4 3 2 6 6 N 1.39145 * 125.68445 * 180.02562 * 5 4 3 7 7 C 1.35922 * 126.10738 * 359.68504 * 6 5 4 8 8 C 1.35277 * 107.59958 * 179.84033 * 7 6 5 9 9 C 1.39977 * 107.97375 * 0.42983 * 8 7 6 10 10 C 1.50696 * 125.80735 * 179.71365 * 9 8 7 11 11 C 1.53006 * 109.46999 * 125.00098 * 10 9 8 12 12 C 1.50696 * 109.46999 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00403 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99721 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99691 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99980 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47010 * 90.00251 * 16 14 12 18 18 H 1.48497 * 109.46928 * 210.00321 * 16 14 12 19 19 H 1.48504 * 109.47281 * 330.00112 * 16 14 12 20 20 N 1.30821 * 108.37902 * 359.72990 * 9 8 7 21 21 O 1.34190 * 108.62228 * 359.97438 * 5 4 3 22 22 H 1.08997 * 109.47265 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47369 * 299.99942 * 1 2 3 24 24 H 1.09003 * 109.47496 * 59.99934 * 1 2 3 25 25 H 1.07994 * 126.11643 * 359.97438 * 3 2 1 26 26 H 1.08003 * 126.20193 * 359.97438 * 7 6 5 27 27 H 1.08001 * 126.01312 * 180.16288 * 8 7 6 28 28 H 1.08997 * 109.47321 * 244.99540 * 10 9 8 29 29 H 1.09000 * 109.47535 * 5.00309 * 10 9 8 30 30 H 1.09005 * 109.46904 * 299.99841 * 11 10 9 31 31 H 1.09000 * 109.47253 * 59.99474 * 11 10 9 32 32 H 0.97000 * 119.99912 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3035 1.0810 0.0000 4 7 3.5783 0.6516 0.0006 5 6 3.5788 -0.6571 0.0004 6 7 4.7094 -1.4683 0.0013 7 6 6.0003 -1.0431 -0.0034 8 6 6.7923 -2.1398 0.0031 9 6 5.9657 -3.2695 0.0021 10 6 6.4313 -4.7027 0.0019 11 6 5.8012 -5.4438 1.1828 12 6 6.2663 -6.8772 1.1822 13 1 6.9433 -7.2250 0.4160 14 6 5.8268 -7.7450 2.1594 15 7 6.2331 -8.9958 2.1592 16 14 4.6553 -7.1438 3.4843 17 1 3.2543 -7.3375 3.0314 18 1 4.8828 -7.9144 4.7331 19 1 4.8974 -5.7014 3.7417 20 7 4.7202 -2.8692 0.0011 21 8 2.3074 -1.0862 0.0002 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.9787 2.1110 -0.0004 26 1 6.3335 -0.0158 -0.0090 27 1 7.8723 -2.1432 0.0041 28 1 6.1311 -5.1821 -0.9298 29 1 7.5172 -4.7320 0.0922 30 1 6.1014 -4.9644 2.1146 31 1 4.7153 -5.4145 1.0926 32 1 5.9242 -9.6062 2.8468 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259857786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:44 Heat of formation + Delta-G solvation = 82.109338 kcal Electronic energy + Delta-G solvation = -16797.442313 eV Core-core repulsion = 13954.063967 eV Total energy + Delta-G solvation = -2843.378346 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.63360 -42.45134 -36.54647 -36.01121 -34.79226 -33.48769 -31.94833 -31.31762 -28.39031 -26.77804 -24.57208 -23.44957 -22.50588 -21.90141 -20.75767 -19.73050 -18.93383 -18.36977 -17.03978 -16.44803 -16.05295 -15.64202 -15.45542 -15.05022 -14.84145 -14.57129 -14.27718 -14.00186 -13.91056 -13.43642 -13.34921 -13.02162 -12.76396 -12.30078 -12.13238 -11.88649 -11.86802 -11.52394 -11.39408 -11.01235 -10.78286 -10.27919 -9.21362 -8.31750 -6.34256 -0.28673 0.32161 0.85674 1.30534 1.31556 1.43875 1.56975 1.66542 1.71884 2.32375 3.03782 3.36250 3.44380 3.71636 3.88041 3.93452 4.27898 4.33374 4.54338 4.58095 4.67241 4.68001 4.79123 4.88736 4.97253 4.99990 5.17416 5.30589 5.43280 5.46342 5.63606 5.83192 6.14480 6.25469 6.62225 6.72886 7.30247 8.84571 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.005165 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.953789 B = 5419.638209 C = 6223.293938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.050 4.050 3 C -0.026 4.026 4 N -0.487 5.487 5 C 0.408 3.592 6 N -0.321 5.321 7 C 0.089 3.911 8 C -0.241 4.241 9 C 0.102 3.898 10 C -0.023 4.023 11 C -0.001 4.001 12 C -0.528 4.528 13 H 0.049 0.951 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.260 1.260 20 N -0.324 5.324 21 O -0.218 6.218 22 H 0.073 0.927 23 H 0.117 0.883 24 H 0.119 0.881 25 H 0.237 0.763 26 H 0.222 0.778 27 H 0.200 0.800 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.015 0.985 31 H 0.005 0.995 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.394 24.387 -4.367 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C -0.165 4.165 4 N -0.223 5.223 5 C 0.115 3.885 6 N -0.106 5.106 7 C -0.048 4.048 8 C -0.269 4.269 9 C -0.068 4.068 10 C -0.062 4.062 11 C -0.039 4.039 12 C -0.566 4.566 13 H 0.067 0.933 14 C -0.183 4.183 15 N -0.585 5.585 16 Si 0.764 3.236 17 H -0.199 1.199 18 H -0.201 1.201 19 H -0.184 1.184 20 N -0.143 5.143 21 O -0.104 6.104 22 H 0.092 0.908 23 H 0.136 0.864 24 H 0.138 0.862 25 H 0.253 0.747 26 H 0.238 0.762 27 H 0.217 0.783 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.033 0.967 31 H 0.024 0.976 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.185 24.255 -4.276 26.286 hybrid contribution -0.197 -0.746 0.606 0.981 sum -9.382 23.509 -3.670 25.577 Atomic orbital electron populations 1.20610 0.79957 1.05100 1.06498 1.24504 0.96663 0.82710 1.06355 1.23695 0.85041 1.02310 1.05415 1.70635 1.25702 1.03864 1.22147 1.20683 0.78675 0.85333 1.03833 1.44548 1.02036 1.04211 1.59794 1.23438 0.79493 1.02675 0.99192 1.22100 1.02669 0.88777 1.13314 1.23259 0.90204 0.98719 0.94592 1.20060 1.01548 0.84924 0.99649 1.19406 0.95545 0.94084 0.94855 1.21430 1.28253 0.94641 1.12246 0.93273 1.25800 0.97728 0.94804 1.00000 1.70025 1.46720 1.05566 1.36186 0.85829 0.79537 0.79178 0.79104 1.19864 1.20136 1.18408 1.77712 1.22603 0.86241 1.27788 1.84473 1.16175 1.38692 1.71059 0.90839 0.86450 0.86238 0.74698 0.76171 0.78273 0.90538 0.87838 0.96678 0.97613 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.43 71.24 0.74 0.09 16 2 C -0.05 -1.03 7.38 24.78 0.18 -0.84 16 3 C -0.03 -0.49 11.79 83.38 0.98 0.49 16 4 N -0.49 -13.04 11.15 -313.36 -3.49 -16.54 16 5 C 0.41 13.26 9.01 178.80 1.61 14.87 16 6 N -0.32 -11.15 3.78 -307.10 -1.16 -12.31 16 7 C 0.09 2.40 11.34 83.38 0.95 3.34 16 8 C -0.24 -6.67 10.72 22.01 0.24 -6.44 16 9 C 0.10 3.75 6.49 43.13 0.28 4.03 16 10 C -0.02 -0.91 5.73 29.85 0.17 -0.73 16 11 C 0.00 -0.04 4.00 29.85 0.12 0.08 16 12 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 13 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 14 C 0.01 0.85 5.47 84.66 0.46 1.31 16 15 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 16 Si 0.94 46.84 27.47 68.60 1.88 48.72 16 17 H -0.27 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 20 N -0.32 -13.25 12.48 -47.33 -0.59 -13.84 16 21 O -0.22 -6.97 10.79 -7.54 -0.08 -7.05 16 22 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 24 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.24 2.08 8.06 -2.91 -0.02 2.05 16 26 H 0.22 4.02 8.06 -2.91 -0.02 4.00 16 27 H 0.20 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.10 3.66 8.12 -2.39 -0.02 3.64 16 30 H 0.01 0.75 7.20 -2.38 -0.02 0.73 16 31 H 0.01 0.29 7.57 -2.39 -0.02 0.27 16 32 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.19 288.35 3.90 -74.29 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: 1.07 Total: 0.59 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.98 Total: -14.42 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.95 Total: -102.12 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.08 Total: -7.05 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.88 Total: 48.72 kcal Total: -78.19 3.90 -74.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259857786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.395 kcal (2) G-P(sol) polarization free energy of solvation -78.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds