Wall clock time and date at job start Mon Mar 30 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34407 * 126.34898 * 2 1 4 4 N 1.34296 * 107.85124 * 179.97438 * 3 2 1 5 5 C 1.31306 * 108.63111 * 359.97438 * 4 3 2 6 6 C 1.47686 * 125.74289 * 180.02562 * 5 4 3 7 7 C 1.36184 * 126.13764 * 0.02974 * 6 5 4 8 8 N 1.36472 * 106.70863 * 180.30015 * 7 6 5 9 9 C 1.46507 * 126.28919 * 179.70174 * 8 7 6 10 10 C 1.53005 * 109.46917 * 89.99854 * 9 8 7 11 11 C 1.50700 * 109.46646 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00332 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99691 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00205 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00013 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46973 * 90.00403 * 15 13 11 17 17 H 1.48497 * 109.47256 * 210.00270 * 15 13 11 18 18 H 1.48503 * 109.47412 * 330.00388 * 15 13 11 19 19 C 1.35728 * 107.42156 * 359.57831 * 8 7 6 20 20 N 1.30281 * 108.96228 * 0.42899 * 19 8 7 21 21 O 1.34447 * 108.51351 * 0.26838 * 5 4 3 22 22 H 1.08998 * 109.46849 * 90.00137 * 1 2 3 23 23 H 1.09000 * 109.47735 * 210.00419 * 1 2 3 24 24 H 1.09003 * 109.46909 * 330.00958 * 1 2 3 25 25 H 1.07991 * 126.07616 * 359.97146 * 3 2 1 26 26 H 1.08002 * 126.64177 * 0.03004 * 7 6 5 27 27 H 1.09003 * 109.46671 * 209.99214 * 9 8 7 28 28 H 1.08995 * 109.47236 * 329.99852 * 9 8 7 29 29 H 1.09002 * 109.46713 * 299.99955 * 10 9 8 30 30 H 1.08995 * 109.47169 * 59.99957 * 10 9 8 31 31 H 0.96993 * 120.00112 * 179.97438 * 14 13 11 32 32 H 1.07999 * 125.51858 * 180.16815 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3037 1.0825 0.0000 4 7 3.5772 0.6565 0.0006 5 6 3.5803 -0.6566 0.0015 6 6 4.7810 -1.5165 0.0029 7 6 6.0743 -1.0899 0.0040 8 7 6.8563 -2.2084 -0.0018 9 6 8.3210 -2.2423 -0.0091 10 6 8.8379 -2.2566 1.4309 11 6 10.3445 -2.2908 1.4234 12 1 10.8797 -2.3018 0.4854 13 6 11.0396 -2.3092 2.6140 14 7 12.3544 -2.3396 2.6075 15 14 10.1138 -2.2910 4.2363 16 1 9.8362 -3.6859 4.6635 17 1 10.9374 -1.6118 5.2686 18 1 8.8319 -1.5608 4.0666 19 6 6.0279 -3.2835 0.0032 20 7 4.7935 -2.8668 0.0025 21 8 2.3064 -1.0865 -0.0045 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.9776 2.1121 -0.0004 26 1 6.4150 -0.0651 0.0045 27 1 8.6610 -3.1397 -0.5261 28 1 8.7023 -1.3601 -0.5233 29 1 8.4978 -1.3592 1.9479 30 1 8.4566 -3.1387 1.9451 31 1 12.8433 -2.3522 3.4450 32 1 6.3412 -4.3170 0.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:39 Heat of formation + Delta-G solvation = 74.663210 kcal Electronic energy + Delta-G solvation = -16668.436736 eV Core-core repulsion = 13824.735502 eV Total energy + Delta-G solvation = -2843.701234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.15107 -41.78914 -35.05691 -34.62756 -32.95804 -32.46785 -30.16808 -29.82635 -26.65565 -25.30682 -23.06262 -21.99387 -21.45088 -20.36367 -20.25426 -17.73792 -16.83640 -16.67102 -15.95248 -15.10040 -14.69206 -14.49690 -14.22100 -13.73764 -13.58134 -13.34182 -13.30614 -13.20759 -12.81188 -12.46385 -11.93944 -11.32557 -11.26229 -10.87466 -10.49906 -10.45810 -10.05139 -9.94191 -9.53151 -9.48922 -9.10299 -8.74585 -7.87418 -6.25269 -4.27913 1.19734 2.20746 2.56356 2.63297 3.15275 3.19232 3.28113 3.31628 3.52003 3.88689 4.27914 4.68544 4.90788 4.95532 5.07815 5.09441 5.18732 5.23273 5.29355 5.43384 5.67082 5.78482 5.84693 6.04793 6.09538 6.22191 6.36196 6.63570 6.84549 6.99455 7.28329 7.51542 7.75558 8.10472 8.23997 8.74908 9.34759 10.86988 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.004297 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.191496 B = 6514.734234 C = 6752.897008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.065 4.065 3 C -0.036 4.036 4 N -0.483 5.483 5 C 0.300 3.700 6 C 0.031 3.969 7 C 0.035 3.965 8 N -0.444 5.444 9 C 0.110 3.890 10 C -0.024 4.024 11 C -0.532 4.532 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.878 3.122 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.194 3.806 20 N -0.479 5.479 21 O -0.188 6.188 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.183 0.817 26 H 0.187 0.813 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.267 0.733 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.866 3.478 -5.441 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C -0.176 4.176 4 N -0.213 5.213 5 C 0.096 3.904 6 C -0.097 4.097 7 C -0.106 4.106 8 N -0.123 5.123 9 C -0.010 4.010 10 C -0.062 4.062 11 C -0.570 4.570 12 H 0.095 0.905 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.705 3.295 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.090 4.090 20 N -0.197 5.197 21 O -0.074 6.074 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.200 0.800 26 H 0.204 0.796 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -18.694 3.260 -5.338 19.712 hybrid contribution -0.201 0.122 0.994 1.021 sum -18.895 3.382 -4.344 19.680 Atomic orbital electron populations 1.20215 0.84178 1.04166 1.03532 1.23471 0.95045 0.84722 1.08641 1.23013 0.87736 1.00180 1.06633 1.70702 1.22717 1.07932 1.19922 1.22333 0.81236 0.87716 0.99100 1.16792 0.86934 0.89463 1.16492 1.22581 0.89380 0.93411 1.05277 1.46195 1.09648 1.05957 1.50493 1.22344 0.71998 1.04489 1.02186 1.19946 0.97977 0.97776 0.90508 1.20822 0.88207 1.52938 0.95021 0.90471 1.24944 0.94728 0.93938 0.99195 1.69882 1.06150 1.49555 1.27530 0.86802 0.80306 0.78827 0.83558 1.20020 1.21016 1.19024 1.25087 0.84025 0.94723 1.05132 1.70260 1.20960 1.08852 1.19653 1.84558 1.17318 1.35837 1.69688 0.90041 0.90459 0.89154 0.79954 0.79570 0.88675 0.88954 0.95651 0.96057 0.92308 0.77114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.43 36.01 0.38 -0.09 16 2 C -0.07 -0.81 7.38 -35.66 -0.26 -1.08 16 3 C -0.04 -0.46 11.79 -17.83 -0.21 -0.67 16 4 N -0.48 -7.87 11.28 -11.75 -0.13 -8.01 16 5 C 0.30 5.21 8.18 -13.92 -0.11 5.09 16 6 C 0.03 0.56 7.04 -83.34 -0.59 -0.03 16 7 C 0.04 0.58 11.49 -16.23 -0.19 0.39 16 8 N -0.44 -7.19 2.75 -118.12 -0.33 -7.51 16 9 C 0.11 1.84 6.08 -4.04 -0.02 1.81 16 10 C -0.02 -0.52 4.37 -27.88 -0.12 -0.64 16 11 C -0.53 -13.80 9.66 -34.44 -0.33 -14.14 16 12 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 13 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -26.11 13.96 55.43 0.77 -25.34 16 15 Si 0.88 20.84 27.47 -169.99 -4.67 16.17 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 19 C 0.19 3.03 12.56 -89.93 -1.13 1.90 16 20 N -0.48 -8.52 11.28 -11.14 -0.13 -8.65 16 21 O -0.19 -3.07 10.80 3.69 0.04 -3.03 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 26 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.03 0.57 7.20 -51.93 -0.37 0.19 16 30 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.21 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 288.71 15.07 4.35 4.35 Total: -1.00 -32.34 288.71 -6.51 -38.85 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -3.74 Total: -1.35 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.69 Total: -5.49 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.19 Total: -49.51 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.34 -6.51 -38.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.516 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds