Wall clock time and date at job start Mon Mar 30 2020 05:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34407 * 126.34898 * 2 1 4 4 N 1.34296 * 107.85124 * 179.97438 * 3 2 1 5 5 C 1.31306 * 108.63111 * 359.97438 * 4 3 2 6 6 C 1.47686 * 125.74289 * 180.02562 * 5 4 3 7 7 C 1.36184 * 126.13764 * 0.02974 * 6 5 4 8 8 N 1.36472 * 106.70863 * 180.30015 * 7 6 5 9 9 C 1.46507 * 126.28919 * 179.70174 * 8 7 6 10 10 C 1.53005 * 109.46917 * 89.99854 * 9 8 7 11 11 C 1.50700 * 109.46646 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00332 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99691 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00205 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00013 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.46973 * 90.00403 * 15 13 11 17 17 H 1.48497 * 109.47256 * 210.00270 * 15 13 11 18 18 H 1.48503 * 109.47412 * 330.00388 * 15 13 11 19 19 C 1.35728 * 107.42156 * 359.57831 * 8 7 6 20 20 N 1.30281 * 108.96228 * 0.42899 * 19 8 7 21 21 O 1.34447 * 108.51351 * 0.26838 * 5 4 3 22 22 H 1.08998 * 109.46849 * 90.00137 * 1 2 3 23 23 H 1.09000 * 109.47735 * 210.00419 * 1 2 3 24 24 H 1.09003 * 109.46909 * 330.00958 * 1 2 3 25 25 H 1.07991 * 126.07616 * 359.97146 * 3 2 1 26 26 H 1.08002 * 126.64177 * 0.03004 * 7 6 5 27 27 H 1.09003 * 109.46671 * 209.99214 * 9 8 7 28 28 H 1.08995 * 109.47236 * 329.99852 * 9 8 7 29 29 H 1.09002 * 109.46713 * 299.99955 * 10 9 8 30 30 H 1.08995 * 109.47169 * 59.99957 * 10 9 8 31 31 H 0.96993 * 120.00112 * 179.97438 * 14 13 11 32 32 H 1.07999 * 125.51858 * 180.16815 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3037 1.0825 0.0000 4 7 3.5772 0.6565 0.0006 5 6 3.5803 -0.6566 0.0015 6 6 4.7810 -1.5165 0.0029 7 6 6.0743 -1.0899 0.0040 8 7 6.8563 -2.2084 -0.0018 9 6 8.3210 -2.2423 -0.0091 10 6 8.8379 -2.2566 1.4309 11 6 10.3445 -2.2908 1.4234 12 1 10.8797 -2.3018 0.4854 13 6 11.0396 -2.3092 2.6140 14 7 12.3544 -2.3396 2.6075 15 14 10.1138 -2.2910 4.2363 16 1 9.8362 -3.6859 4.6635 17 1 10.9374 -1.6118 5.2686 18 1 8.8319 -1.5608 4.0666 19 6 6.0279 -3.2835 0.0032 20 7 4.7935 -2.8668 0.0025 21 8 2.3064 -1.0865 -0.0045 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5137 25 1 1.9776 2.1121 -0.0004 26 1 6.4150 -0.0651 0.0045 27 1 8.6610 -3.1397 -0.5261 28 1 8.7023 -1.3601 -0.5233 29 1 8.4978 -1.3592 1.9479 30 1 8.4566 -3.1387 1.9451 31 1 12.8433 -2.3522 3.4450 32 1 6.3412 -4.3170 0.0032 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:38 Heat of formation + Delta-G solvation = 53.191087 kcal Electronic energy + Delta-G solvation = -16669.367837 eV Core-core repulsion = 13824.735502 eV Total energy + Delta-G solvation = -2844.632335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.25135 -43.03224 -36.56382 -35.76608 -34.67882 -33.52856 -31.81095 -30.94783 -27.80549 -26.77223 -24.28552 -23.26820 -22.84555 -21.64467 -21.45483 -19.34621 -18.37080 -17.79821 -17.18335 -16.66125 -15.93040 -15.88581 -15.49494 -15.03043 -14.83306 -14.68869 -14.62094 -14.11245 -13.89935 -13.60662 -13.19042 -13.00813 -12.68484 -12.39993 -12.13790 -11.86076 -11.59828 -11.55738 -11.23551 -10.82898 -10.79377 -10.29609 -9.00322 -8.34655 -6.39909 0.05680 1.05561 1.32346 1.36414 1.44875 1.46952 1.50973 1.95533 2.28201 2.30341 2.79894 3.01457 3.75068 3.92373 3.95658 3.98716 4.12389 4.30011 4.33193 4.52707 4.63252 4.64485 4.70360 4.94820 5.04886 5.13898 5.15784 5.28613 5.30324 5.48028 5.54194 6.08359 6.18680 6.63062 6.68796 6.88626 7.25820 8.80883 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.038869 B = 0.004297 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.191496 B = 6514.734234 C = 6752.897008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.057 4.057 3 C -0.052 4.052 4 N -0.496 5.496 5 C 0.263 3.737 6 C 0.017 3.983 7 C 0.028 3.972 8 N -0.447 5.447 9 C 0.124 3.876 10 C -0.020 4.020 11 C -0.529 4.529 12 H 0.052 0.948 13 C 0.017 3.983 14 N -0.942 5.942 15 Si 0.939 3.061 16 H -0.266 1.266 17 H -0.285 1.285 18 H -0.258 1.258 19 C 0.202 3.798 20 N -0.507 5.507 21 O -0.209 6.209 22 H 0.100 0.900 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.219 0.781 26 H 0.198 0.802 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.268 0.732 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.209 3.796 -5.314 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C -0.191 4.191 4 N -0.227 5.227 5 C 0.060 3.940 6 C -0.110 4.110 7 C -0.113 4.113 8 N -0.126 5.126 9 C 0.004 3.996 10 C -0.058 4.058 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.582 5.582 15 Si 0.764 3.236 16 H -0.191 1.191 17 H -0.211 1.211 18 H -0.182 1.182 19 C -0.082 4.082 20 N -0.226 5.226 21 O -0.096 6.096 22 H 0.118 0.882 23 H 0.099 0.901 24 H 0.139 0.861 25 H 0.236 0.764 26 H 0.215 0.785 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -21.071 3.580 -5.222 22.002 hybrid contribution 0.420 0.071 0.877 0.975 sum -20.651 3.651 -4.345 21.417 Atomic orbital electron populations 1.20521 0.80414 1.05814 1.05204 1.24529 0.96922 0.83693 1.05888 1.23656 0.86590 1.02017 1.06820 1.70656 1.24760 1.07703 1.19575 1.22399 0.81631 0.88129 1.01848 1.17066 0.87701 0.89701 1.16574 1.22771 0.89198 0.94002 1.05308 1.46104 1.09206 1.06157 1.51140 1.22083 0.72324 1.05964 0.99266 1.19819 0.94953 0.97388 0.93690 1.21168 0.90679 1.50994 0.93880 0.92934 1.25782 0.95378 0.94126 1.02871 1.70012 1.07855 1.51862 1.28426 0.85827 0.79155 0.79190 0.79457 1.19112 1.21058 1.18221 1.25814 0.83363 0.95852 1.03192 1.70261 1.22133 1.09167 1.21026 1.84547 1.17527 1.37584 1.69900 0.88156 0.90130 0.86127 0.76431 0.78538 0.86733 0.88200 0.96431 0.95646 0.92286 0.73780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.43 71.24 0.74 0.02 16 2 C -0.06 -1.33 7.38 24.81 0.18 -1.14 16 3 C -0.05 -1.23 11.79 83.44 0.98 -0.25 16 4 N -0.50 -15.88 11.28 -305.10 -3.44 -19.32 16 5 C 0.26 9.13 8.18 87.27 0.71 9.84 16 6 C 0.02 0.59 7.04 40.67 0.29 0.88 16 7 C 0.03 0.90 11.49 83.49 0.96 1.86 16 8 N -0.45 -13.76 2.75 -527.61 -1.45 -15.22 16 9 C 0.12 3.93 6.08 86.38 0.53 4.45 16 10 C -0.02 -0.84 4.37 29.85 0.13 -0.71 16 11 C -0.53 -27.36 9.66 25.60 0.25 -27.11 16 12 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 13 C 0.02 0.93 5.47 84.65 0.46 1.39 16 14 N -0.94 -55.86 13.96 21.45 0.30 -55.56 16 15 Si 0.94 42.64 27.47 68.60 1.88 44.53 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.26 -11.29 6.54 99.48 0.65 -10.64 16 19 C 0.20 5.92 12.56 180.11 2.26 8.19 16 20 N -0.51 -17.70 11.28 -189.16 -2.13 -19.84 16 21 O -0.21 -6.76 10.80 -9.70 -0.10 -6.86 16 22 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.22 3.28 8.06 -2.92 -0.02 3.25 16 26 H 0.20 5.69 8.06 -2.91 -0.02 5.67 16 27 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.02 0.75 7.20 -2.39 -0.02 0.74 16 30 H 0.03 1.04 7.57 -2.39 -0.02 1.02 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.25 5.10 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -70.81 288.71 3.62 -67.20 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.07 Total: 7.66 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 7.50 Total: -2.58 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -6.73 Total: -109.94 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.10 Total: -6.86 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.88 Total: 44.53 kcal Total: -70.81 3.62 -67.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.387 kcal (2) G-P(sol) polarization free energy of solvation -70.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds