Wall clock time and date at job start Mon Mar 30 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34557 * 126.34425 * 2 1 4 4 N 1.34141 * 107.86868 * 179.75686 * 3 2 1 5 5 C 1.31407 * 108.63248 * 0.37434 * 4 3 2 6 6 C 1.47280 * 125.74595 * 179.89363 * 5 4 3 7 7 C 1.37938 * 126.45843 * 359.69063 * 6 5 4 8 8 C 1.39388 * 107.66426 * 180.02562 * 7 6 5 9 9 C 1.50697 * 125.63350 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47466 * 124.99794 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 N 1.30899 * 108.73166 * 0.23782 * 8 7 6 20 20 N 1.36543 * 126.46355 * 179.69221 * 6 5 4 21 21 H 0.96997 * 126.12735 * 359.97438 * 20 6 5 22 22 O 1.34507 * 108.50704 * 359.62654 * 5 4 3 23 23 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.46657 * 299.99237 * 1 2 3 25 25 H 1.09000 * 109.47032 * 59.99726 * 1 2 3 26 26 H 1.07997 * 126.06829 * 0.02562 * 3 2 1 27 27 H 1.08001 * 126.16804 * 359.97438 * 7 6 5 28 28 H 1.09002 * 109.47120 * 4.99547 * 9 8 7 29 29 H 1.08998 * 109.46862 * 245.00349 * 9 8 7 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 32 32 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3045 1.0838 0.0000 4 7 3.5768 0.6587 0.0054 5 6 3.5804 -0.6553 0.0006 6 6 4.7781 -1.5124 0.0018 7 6 6.0903 -1.0872 0.0021 8 6 6.9021 -2.2204 0.0027 9 6 8.4091 -2.2208 0.0027 10 6 8.9189 -3.0476 1.1848 11 6 10.4259 -3.0485 1.1844 12 1 10.9660 -2.5126 0.4179 13 6 11.1152 -3.7326 2.1631 14 7 10.4575 -4.3848 3.0967 15 14 12.9831 -3.7331 2.1629 16 1 13.4785 -2.5857 2.9649 17 1 13.4779 -5.0016 2.7558 18 1 13.4781 -3.6125 0.7681 19 7 6.1392 -3.2840 -0.0024 20 7 4.7990 -2.8777 0.0028 21 1 4.0244 -3.4615 0.0031 22 8 2.3061 -1.0858 0.0003 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9782 2.1133 0.0004 27 1 6.4279 -0.0613 0.0012 28 1 8.7727 -1.1970 0.0917 29 1 8.7722 -2.6556 -0.9284 30 1 8.5553 -4.0713 1.0959 31 1 8.5557 -2.6126 2.1159 32 1 10.9424 -4.8664 3.7850 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259866134.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:36 Heat of formation + Delta-G solvation = 57.076019 kcal Electronic energy + Delta-G solvation = -16476.882475 eV Core-core repulsion = 13632.418603 eV Total energy + Delta-G solvation = -2844.463872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.46426 -42.12242 -36.11051 -35.99895 -34.31895 -33.58929 -31.39923 -31.28214 -27.65610 -27.31316 -24.52304 -23.76613 -22.78407 -21.66919 -20.54933 -19.62942 -18.39233 -17.99930 -17.18517 -16.50281 -16.00262 -15.66597 -15.44990 -14.77978 -14.66338 -14.58281 -14.27521 -13.88581 -13.84197 -13.30591 -13.07681 -12.82717 -12.65908 -12.47353 -12.13350 -11.87834 -11.71562 -11.37085 -11.21282 -10.80990 -10.51057 -10.09215 -9.26794 -8.15239 -6.26916 -0.37566 0.87050 1.23476 1.43982 1.46428 1.48779 1.57293 1.57932 1.90150 2.45694 2.92622 3.18364 3.60692 3.70910 3.91554 4.01395 4.29115 4.37279 4.55612 4.70201 4.71840 4.80161 4.86927 4.97941 5.05805 5.11320 5.23017 5.46595 5.55581 5.71999 5.88429 6.08758 6.25942 6.48488 6.56983 6.90707 7.42278 8.97184 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.062472 B = 0.003581 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.095043 B = 7816.379437 C = 7950.900308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.028 4.028 3 C -0.052 4.052 4 N -0.464 5.464 5 C 0.222 3.778 6 C 0.146 3.854 7 C -0.203 4.203 8 C 0.081 3.919 9 C -0.028 4.028 10 C 0.037 3.963 11 C -0.540 4.540 12 H 0.071 0.929 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.259 1.259 19 N -0.290 5.290 20 N -0.459 5.459 21 H 0.451 0.549 22 O -0.207 6.207 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.224 0.776 27 H 0.173 0.827 28 H 0.092 0.908 29 H 0.079 0.921 30 H -0.009 1.009 31 H -0.014 1.014 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.514 10.755 -7.646 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.082 4.082 3 C -0.192 4.192 4 N -0.195 5.195 5 C 0.018 3.982 6 C 0.017 3.983 7 C -0.234 4.234 8 C -0.083 4.083 9 C -0.067 4.067 10 C -0.001 4.001 11 C -0.578 4.578 12 H 0.089 0.911 13 C -0.202 4.202 14 N -0.577 5.577 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.183 1.183 19 N -0.116 5.116 20 N -0.172 5.172 21 H 0.299 0.701 22 O -0.094 6.094 23 H 0.102 0.898 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.240 0.760 27 H 0.191 0.809 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.010 0.990 31 H 0.004 0.996 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.983 9.685 -7.509 24.299 hybrid contribution -0.093 -0.259 0.444 0.523 sum -21.076 9.426 -7.065 24.144 Atomic orbital electron populations 1.20638 0.79872 1.05592 1.06318 1.24670 0.96836 0.83271 1.03383 1.23792 0.86128 1.02485 1.06820 1.70654 1.25087 1.07534 1.16214 1.22088 0.81276 0.88722 1.06107 1.17847 0.90033 0.83455 1.06987 1.21777 0.88629 1.00814 1.12182 1.22660 0.97866 0.90109 0.97698 1.20157 0.84142 1.02342 1.00095 1.18871 0.95007 0.93881 0.92324 1.21724 0.92691 1.31543 1.11867 0.91099 1.26047 1.04175 0.94881 0.95055 1.70140 1.37695 1.34193 1.15717 0.85382 0.78860 0.77466 0.78930 1.19673 1.21131 1.18308 1.77389 0.86428 1.22978 1.24765 1.46602 1.07549 1.03729 1.59294 0.70149 1.84476 1.16976 1.37892 1.70059 0.89824 0.86753 0.86549 0.75960 0.80917 0.88914 0.90306 0.99039 0.99593 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 71.24 0.74 0.36 16 2 C -0.03 -0.47 7.38 24.84 0.18 -0.28 16 3 C -0.05 -0.96 11.79 83.50 0.98 0.03 16 4 N -0.46 -12.67 11.29 -305.29 -3.45 -16.12 16 5 C 0.22 6.29 8.17 87.14 0.71 7.01 16 6 C 0.15 4.69 7.21 40.72 0.29 4.98 16 7 C -0.20 -7.09 10.70 22.48 0.24 -6.85 16 8 C 0.08 3.27 6.45 42.97 0.28 3.55 16 9 C -0.03 -1.22 5.73 29.85 0.17 -1.05 16 10 C 0.04 2.05 4.93 29.85 0.15 2.20 16 11 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 12 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 13 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 14 N -0.94 -59.09 13.29 21.45 0.28 -58.81 16 15 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 N -0.29 -11.84 12.63 -47.65 -0.60 -12.44 16 20 N -0.46 -14.79 7.44 -48.22 -0.36 -15.15 16 21 H 0.45 11.29 8.96 -213.36 -1.91 9.38 16 22 O -0.21 -4.90 10.80 -9.51 -0.10 -5.00 16 23 H 0.08 0.45 8.14 -2.39 -0.02 0.44 16 24 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.17 5.37 8.06 -2.91 -0.02 5.35 16 28 H 0.09 3.61 8.11 -2.39 -0.02 3.59 16 29 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -75.62 291.77 1.48 -74.14 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -0.77 Total: 7.25 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 4.45 Total: -20.89 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -4.12 Total: -102.52 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.10 Total: -5.00 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.62 1.48 -74.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259866134.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.217 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds