Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47182 * 2 1 4 4 N 1.46491 * 109.47687 * 120.00254 * 2 1 3 5 5 C 1.39529 * 126.28240 * 119.99488 * 4 2 1 6 6 C 1.38864 * 133.22801 * 0.02562 * 5 4 2 7 7 C 1.38652 * 120.37692 * 179.69967 * 6 5 4 8 8 C 1.37634 * 120.50246 * 0.02562 * 7 6 5 9 9 C 1.40752 * 120.01785 * 359.94847 * 8 7 6 10 10 C 1.41152 * 120.29968 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99790 * 154.92666 * 10 9 8 12 12 C 1.39951 * 120.00255 * 334.91949 * 10 9 8 13 13 N 1.30845 * 120.00201 * 342.62720 * 12 10 9 14 14 Si 1.86798 * 120.00090 * 162.62793 * 12 10 9 15 15 H 1.48497 * 109.47107 * 90.00086 * 14 12 10 16 16 H 1.48501 * 109.47265 * 210.00142 * 14 12 10 17 17 H 1.48504 * 109.47270 * 330.00341 * 14 12 10 18 18 C 1.39064 * 106.59018 * 179.71799 * 5 4 2 19 19 O 1.35272 * 107.44445 * 0.24598 * 18 5 4 20 20 C 1.34252 * 109.18141 * 359.97438 * 19 18 5 21 21 O 1.21602 * 125.32499 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47077 * 299.99442 * 1 2 3 24 24 H 1.09001 * 109.47885 * 59.99921 * 1 2 3 25 25 H 1.09004 * 109.47077 * 240.00558 * 2 1 3 26 26 H 1.09000 * 109.46844 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46775 * 300.00758 * 3 2 1 28 28 H 1.08995 * 109.46574 * 60.00247 * 3 2 1 29 29 H 1.08003 * 119.81627 * 359.67863 * 6 5 4 30 30 H 1.08002 * 119.75071 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.99359 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00142 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8238 -1.8297 1.2207 6 6 3.3834 -2.6205 0.2259 7 6 4.1656 -3.7161 0.5581 8 6 4.3975 -4.0348 1.8768 9 6 3.8399 -3.2458 2.9004 10 6 4.0743 -3.5669 4.2548 11 1 4.0160 -2.7971 5.0101 12 6 4.3821 -4.8827 4.6189 13 7 4.1267 -5.8664 3.7948 14 14 5.1576 -5.2347 6.2815 15 1 4.0896 -5.4698 7.2860 16 1 6.0172 -6.4414 6.1812 17 1 5.9826 -4.0725 6.6989 18 6 3.0449 -2.1307 2.5602 19 8 2.3886 -1.2057 3.2974 20 6 1.7705 -0.3435 2.4747 21 8 1.0965 0.6051 2.8277 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.2082 -2.3811 -0.8126 30 1 4.5956 -4.3245 -0.2238 31 1 5.0077 -4.8902 2.1262 32 1 4.3403 -6.7783 4.0470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -34.957347 kcal Electronic energy + Delta-G solvation = -17906.833452 eV Core-core repulsion = 15026.085962 eV Total energy + Delta-G solvation = -2880.747489 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.07921 -37.57319 -36.75225 -35.73255 -33.82261 -31.98515 -29.83622 -27.78069 -27.11354 -25.56538 -23.30739 -22.00449 -21.42746 -19.45499 -18.04811 -16.91092 -16.32552 -16.21154 -15.47175 -15.17182 -14.44504 -14.03954 -13.44796 -13.38091 -13.13738 -12.76214 -12.44517 -12.22245 -11.97523 -11.78415 -11.54910 -11.38392 -11.24328 -11.14579 -10.89335 -10.66009 -10.49800 -9.88426 -9.75677 -9.68229 -9.23070 -7.61258 -7.10566 -6.95606 -4.59541 2.39997 2.59524 2.97322 2.97730 2.99192 3.06146 3.37812 3.79175 4.05763 4.35634 4.85599 5.15040 5.23756 5.31405 5.51353 5.66146 5.73381 5.86272 5.92928 6.13345 6.16928 6.33237 6.36829 6.54504 6.66592 6.76347 6.96562 7.10010 7.37168 7.54423 7.72692 7.91288 8.09195 8.38970 8.52642 8.58332 8.65631 9.92076 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.034714 B = 0.006925 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.405113 B = 4042.230987 C = 4594.985669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.161 3.839 3 C -0.167 4.167 4 N -0.546 5.546 5 C 0.096 3.904 6 C -0.235 4.235 7 C -0.077 4.077 8 C -0.166 4.166 9 C 0.151 3.849 10 C -0.444 4.444 11 H 0.086 0.914 12 C 0.076 3.924 13 N -0.780 5.780 14 Si 0.915 3.085 15 H -0.267 1.267 16 H -0.273 1.273 17 H -0.257 1.257 18 C -0.086 4.086 19 O -0.231 6.231 20 C 0.622 3.378 21 O -0.530 6.530 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.133 0.867 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.426 3.306 -6.425 7.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.060 3.940 3 C -0.225 4.225 4 N -0.279 5.279 5 C -0.001 4.001 6 C -0.258 4.258 7 C -0.096 4.096 8 C -0.186 4.186 9 C 0.148 3.852 10 C -0.472 4.472 11 H 0.104 0.896 12 C -0.144 4.144 13 N -0.403 5.403 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.198 1.198 17 H -0.181 1.181 18 C -0.131 4.131 19 O -0.136 6.136 20 C 0.380 3.620 21 O -0.419 6.419 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.829 3.616 -6.021 7.072 hybrid contribution 0.185 -0.235 0.549 0.626 sum -0.644 3.381 -5.471 6.463 Atomic orbital electron populations 1.22196 0.94333 1.02801 1.03239 1.20946 0.94615 0.92975 0.85448 1.22193 1.01697 0.95375 1.03241 1.45917 1.48192 1.26952 1.06825 1.18311 0.96776 0.89312 0.95651 1.19200 1.10679 1.00782 0.95098 1.20487 0.97550 0.95298 0.96297 1.21063 1.04522 1.02773 0.90282 1.16604 0.87570 0.86311 0.94736 1.19617 1.39708 0.94587 0.93271 0.89575 1.25979 0.92977 0.95640 0.99813 1.69804 1.32800 1.01023 1.36706 0.86176 0.79861 0.79038 0.81055 1.19149 1.19774 1.18108 1.19227 1.08326 0.99683 0.85894 1.84728 1.57789 1.36396 1.34649 1.18682 0.81011 0.82828 0.79522 1.90980 1.43421 1.28080 1.79387 0.92148 0.90883 0.91182 0.88696 0.92184 0.91182 0.90900 0.88409 0.87726 0.84934 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 9.23 37.15 0.34 -2.03 16 2 C 0.16 2.52 3.52 -67.93 -0.24 2.29 16 3 C -0.17 -2.33 9.23 37.16 0.34 -1.98 16 4 N -0.55 -11.19 2.68 -111.91 -0.30 -11.49 16 5 C 0.10 2.15 6.84 -83.82 -0.57 1.57 16 6 C -0.24 -4.83 9.87 -39.20 -0.39 -5.21 16 7 C -0.08 -1.61 10.01 -39.65 -0.40 -2.00 16 8 C -0.17 -3.93 8.68 -38.85 -0.34 -4.27 16 9 C 0.15 3.89 5.57 -106.75 -0.60 3.30 16 10 C -0.44 -11.41 9.05 -37.84 -0.34 -11.75 16 11 H 0.09 2.21 7.90 -52.48 -0.41 1.80 16 12 C 0.08 1.80 5.14 -17.33 -0.09 1.71 16 13 N -0.78 -18.59 10.97 55.55 0.61 -17.98 16 14 Si 0.92 17.71 29.59 -169.99 -5.03 12.68 16 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 16 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 18 C -0.09 -2.17 7.10 -38.19 -0.27 -2.44 16 19 O -0.23 -5.93 10.71 -21.18 -0.23 -6.16 16 20 C 0.62 14.54 8.49 54.06 0.46 15.00 16 21 O -0.53 -12.63 15.65 -19.00 -0.30 -12.93 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 1.18 7.00 -51.93 -0.36 0.81 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 1.32 7.54 -51.93 -0.39 0.93 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.16 7.01 -51.93 -0.36 0.79 16 29 H 0.10 1.72 7.68 -52.48 -0.40 1.32 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.13 3.16 6.18 -52.49 -0.32 2.83 16 32 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 LS Contribution 275.89 15.07 4.16 4.16 Total: -1.00 -27.65 275.89 -6.68 -34.33 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.51 Total: 3.22 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.09 Total: -5.83 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.31 Total: -29.47 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.52 Total: -19.08 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.65 -6.68 -34.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.624 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds