Wall clock time and date at job start Mon Mar 30 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47182 * 2 1 4 4 N 1.46491 * 109.47687 * 120.00254 * 2 1 3 5 5 C 1.39529 * 126.28240 * 119.99488 * 4 2 1 6 6 C 1.38864 * 133.22801 * 0.02562 * 5 4 2 7 7 C 1.38652 * 120.37692 * 179.69967 * 6 5 4 8 8 C 1.37634 * 120.50246 * 0.02562 * 7 6 5 9 9 C 1.40752 * 120.01785 * 359.94847 * 8 7 6 10 10 C 1.41152 * 120.29968 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99790 * 154.92666 * 10 9 8 12 12 C 1.39951 * 120.00255 * 334.91949 * 10 9 8 13 13 N 1.30845 * 120.00201 * 342.62720 * 12 10 9 14 14 Si 1.86798 * 120.00090 * 162.62793 * 12 10 9 15 15 H 1.48497 * 109.47107 * 90.00086 * 14 12 10 16 16 H 1.48501 * 109.47265 * 210.00142 * 14 12 10 17 17 H 1.48504 * 109.47270 * 330.00341 * 14 12 10 18 18 C 1.39064 * 106.59018 * 179.71799 * 5 4 2 19 19 O 1.35272 * 107.44445 * 0.24598 * 18 5 4 20 20 C 1.34252 * 109.18141 * 359.97438 * 19 18 5 21 21 O 1.21602 * 125.32499 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.47122 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47077 * 299.99442 * 1 2 3 24 24 H 1.09001 * 109.47885 * 59.99921 * 1 2 3 25 25 H 1.09004 * 109.47077 * 240.00558 * 2 1 3 26 26 H 1.09000 * 109.46844 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46775 * 300.00758 * 3 2 1 28 28 H 1.08995 * 109.46574 * 60.00247 * 3 2 1 29 29 H 1.08003 * 119.81627 * 359.67863 * 6 5 4 30 30 H 1.08002 * 119.75071 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.99359 * 179.97438 * 8 7 6 32 32 H 0.96997 * 120.00142 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.8238 -1.8297 1.2207 6 6 3.3834 -2.6205 0.2259 7 6 4.1656 -3.7161 0.5581 8 6 4.3975 -4.0348 1.8768 9 6 3.8399 -3.2458 2.9004 10 6 4.0743 -3.5669 4.2548 11 1 4.0160 -2.7971 5.0101 12 6 4.3821 -4.8827 4.6189 13 7 4.1267 -5.8664 3.7948 14 14 5.1576 -5.2347 6.2815 15 1 4.0896 -5.4698 7.2860 16 1 6.0172 -6.4414 6.1812 17 1 5.9826 -4.0725 6.6989 18 6 3.0449 -2.1307 2.5602 19 8 2.3886 -1.2057 3.2974 20 6 1.7705 -0.3435 2.4747 21 8 1.0965 0.6051 2.8277 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3635 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.2082 -2.3811 -0.8126 30 1 4.5956 -4.3245 -0.2238 31 1 5.0077 -4.8902 2.1262 32 1 4.3403 -6.7783 4.0470 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870761.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:24 Heat of formation + Delta-G solvation = -49.698990 kcal Electronic energy + Delta-G solvation = -17907.472697 eV Core-core repulsion = 15026.085962 eV Total energy + Delta-G solvation = -2881.386735 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.85903 -39.33671 -38.42497 -37.44074 -35.54076 -33.48749 -31.62083 -29.51900 -28.21909 -27.38110 -24.84332 -23.78292 -23.19269 -21.00567 -19.77840 -18.60134 -18.13523 -18.01701 -17.20992 -16.77347 -16.04856 -15.38192 -15.12683 -14.75400 -14.71604 -14.47983 -14.19254 -13.67077 -13.39805 -13.26324 -13.06571 -12.87256 -12.84293 -12.56962 -12.32901 -12.18365 -12.13141 -11.58636 -11.44994 -11.36628 -10.93446 -9.41267 -8.85490 -8.71999 -6.47896 0.64891 0.78201 1.37542 1.38492 1.40380 1.52200 1.62866 2.18356 2.27774 2.59427 3.46215 3.60767 3.89723 3.99555 4.13898 4.35471 4.45018 4.61995 4.65395 4.80512 4.83301 4.91094 4.91860 5.05102 5.17235 5.21520 5.22672 5.40240 5.66630 5.76867 5.95656 6.13013 6.26230 6.54898 6.71041 6.81652 6.83780 8.19248 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.034714 B = 0.006925 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.405113 B = 4042.230987 C = 4594.985669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 C -0.161 4.161 4 N -0.533 5.533 5 C 0.094 3.906 6 C -0.217 4.217 7 C -0.069 4.069 8 C -0.182 4.182 9 C 0.123 3.877 10 C -0.488 4.488 11 H 0.066 0.934 12 C 0.044 3.956 13 N -0.803 5.803 14 Si 0.982 3.018 15 H -0.266 1.266 16 H -0.253 1.253 17 H -0.263 1.263 18 C -0.126 4.126 19 O -0.261 6.261 20 C 0.612 3.388 21 O -0.544 6.544 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.112 0.888 25 H 0.125 0.875 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.045 0.955 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 3.006 -8.981 9.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 C -0.218 4.218 4 N -0.265 5.265 5 C -0.003 4.003 6 C -0.239 4.239 7 C -0.087 4.087 8 C -0.202 4.202 9 C 0.120 3.880 10 C -0.516 4.516 11 H 0.084 0.916 12 C -0.173 4.173 13 N -0.427 5.427 14 Si 0.802 3.198 15 H -0.191 1.191 16 H -0.176 1.176 17 H -0.187 1.187 18 C -0.171 4.171 19 O -0.167 6.167 20 C 0.369 3.631 21 O -0.434 6.434 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.131 0.869 25 H 0.143 0.857 26 H 0.074 0.926 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.160 0.840 30 H 0.164 0.836 31 H 0.144 0.856 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.573 3.323 -8.626 9.261 hybrid contribution 0.046 -0.082 1.198 1.202 sum -0.527 3.241 -7.427 8.121 Atomic orbital electron populations 1.22177 0.93174 1.02607 1.03995 1.21569 0.95681 0.93843 0.84236 1.22170 1.01395 0.94305 1.03974 1.46164 1.47113 1.26244 1.07009 1.18601 0.96812 0.89922 0.94946 1.19707 1.08343 0.99218 0.96633 1.20931 0.96473 0.95351 0.95989 1.21120 1.05033 1.02690 0.91356 1.16999 0.88266 0.87249 0.95522 1.19713 1.42980 0.95523 0.93420 0.91589 1.26664 0.92746 0.94631 1.03306 1.69794 1.32992 1.01613 1.38313 0.85197 0.78953 0.79142 0.76478 1.19051 1.17621 1.18704 1.19585 1.09614 1.00371 0.87565 1.84648 1.58406 1.37170 1.36446 1.18882 0.81120 0.82654 0.80405 1.90949 1.44074 1.28554 1.79839 0.92812 0.93528 0.86948 0.85677 0.92598 0.86990 0.93540 0.84017 0.83609 0.85617 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.23 71.98 0.66 -3.49 16 2 C 0.15 4.12 3.52 44.99 0.16 4.28 16 3 C -0.16 -4.05 9.23 71.98 0.66 -3.38 16 4 N -0.53 -21.37 2.68 -738.53 -1.98 -23.35 16 5 C 0.09 4.13 6.84 38.26 0.26 4.39 16 6 C -0.22 -8.16 9.87 22.52 0.22 -7.94 16 7 C -0.07 -2.67 10.01 22.23 0.22 -2.45 16 8 C -0.18 -8.60 8.68 22.74 0.20 -8.40 16 9 C 0.12 6.55 5.57 -21.24 -0.12 6.43 16 10 C -0.49 -26.48 9.05 23.40 0.21 -26.27 16 11 H 0.07 3.67 7.90 -2.91 -0.02 3.65 16 12 C 0.04 2.15 5.14 85.26 0.44 2.59 16 13 N -0.80 -38.76 10.97 21.83 0.24 -38.52 16 14 Si 0.98 36.94 29.59 68.60 2.03 38.97 16 15 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 16 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 C -0.13 -6.59 7.10 23.17 0.16 -6.43 16 19 O -0.26 -14.13 10.71 11.38 0.12 -14.01 16 20 C 0.61 29.38 8.49 129.79 1.10 30.48 16 21 O -0.54 -26.70 15.65 19.18 0.30 -26.40 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.05 1.45 7.00 -2.38 -0.02 1.43 16 24 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.13 2.83 7.54 -2.38 -0.02 2.81 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 27 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.42 7.01 -2.39 -0.02 1.41 16 29 H 0.14 4.11 7.68 -2.91 -0.02 4.08 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.13 6.04 6.18 -2.91 -0.02 6.02 16 32 H 0.30 12.69 8.30 -92.71 -0.77 11.92 16 Total: -1.00 -63.51 275.89 6.04 -57.47 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.14 Total: 16.01 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.19 Total: -10.18 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -1.74 Total: -61.86 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: 0.42 Total: -40.41 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -63.51 6.04 -57.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870761.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.773 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds