Wall clock time and date at job start Mon Mar 30 2020 05:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.35160 * 126.48541 * 239.71502 * 4 2 1 6 6 C 1.47153 * 103.27758 * 179.97438 * 5 4 2 7 7 C 1.47028 * 127.41952 * 180.12214 * 6 5 4 8 8 O 1.34480 * 126.24497 * 0.27010 * 7 6 5 9 9 C 1.34196 * 111.01823 * 179.97438 * 8 7 6 10 10 C 1.34069 * 110.09574 * 359.97438 * 9 8 7 11 11 C 1.40689 * 126.24278 * 179.97438 * 7 6 5 12 12 C 1.40618 * 127.45941 * 0.02562 * 11 7 6 13 13 H 1.08003 * 119.99753 * 0.02562 * 12 11 7 14 14 C 1.40002 * 120.00415 * 179.97438 * 12 11 7 15 15 N 1.30843 * 119.99775 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99893 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47533 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47085 * 120.00394 * 16 14 12 19 19 H 1.48503 * 109.46901 * 239.99945 * 16 14 12 20 20 N 1.31761 * 105.15655 * 0.34120 * 6 5 4 21 21 O 1.20759 * 111.44293 * 359.78153 * 20 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08002 * 128.35893 * 0.02562 * 5 4 2 30 30 H 1.08003 * 124.95231 * 180.02562 * 9 8 7 31 31 H 1.08001 * 126.85966 * 180.02562 * 10 9 8 32 32 H 0.96991 * 119.99746 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8169 -1.8106 -1.2593 6 6 2.9914 -2.0636 -2.6983 7 6 3.7592 -3.1479 -3.3281 8 8 4.4414 -4.1144 -2.6887 9 6 5.0303 -4.9461 -3.5618 10 6 4.7599 -4.5624 -4.8177 11 6 3.9092 -3.3670 -4.7097 12 6 3.3655 -2.6067 -5.7603 13 1 2.7543 -1.7435 -5.5419 14 6 3.6174 -2.9680 -7.0892 15 7 4.3583 -4.0135 -7.3537 16 14 2.8956 -1.9575 -8.4846 17 1 2.1017 -0.8349 -7.9238 18 1 3.9947 -1.4154 -9.3231 19 1 2.0171 -2.8186 -9.3164 20 7 2.3156 -1.1064 -3.3009 21 8 1.7913 -0.3668 -2.5032 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.2181 -2.3697 -0.4269 30 1 5.6333 -5.8005 -3.2922 31 1 5.0965 -5.0379 -5.7270 32 1 4.5325 -4.2640 -8.2744 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259876864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:47 Heat of formation + Delta-G solvation = 48.538432 kcal Electronic energy + Delta-G solvation = -17340.951801 eV Core-core repulsion = 14463.824960 eV Total energy + Delta-G solvation = -2877.126841 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.53677 -40.21886 -35.76421 -34.17939 -32.81080 -30.74002 -29.79670 -28.23664 -27.13574 -25.67190 -22.79265 -22.32339 -20.64538 -19.85509 -18.36000 -17.07368 -16.48252 -16.23645 -15.46286 -14.81175 -14.62542 -14.21522 -14.13664 -13.40338 -13.12806 -12.69506 -12.46039 -12.17219 -11.86769 -11.55938 -11.39310 -11.21652 -11.13813 -10.93491 -10.80686 -10.35137 -9.99201 -9.80147 -9.50584 -9.49028 -8.64392 -8.02970 -6.96447 -6.85553 -4.35587 2.27516 2.49055 3.02909 3.05005 3.15168 3.86651 3.87084 3.89595 4.13385 4.31380 4.80467 5.08401 5.15148 5.36498 5.46701 5.62721 5.63217 5.69708 5.84673 5.89995 6.02452 6.13967 6.25454 6.35146 6.50118 6.64155 6.84327 7.08440 7.10477 7.40917 7.67051 7.95570 8.42883 8.66718 8.73547 8.99772 9.52980 10.07628 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023984 B = 0.006757 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.183653 B = 4142.676984 C = 5124.103926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.007 4.007 3 C -0.148 4.148 4 C -0.046 4.046 5 C -0.246 4.246 6 C 0.160 3.840 7 C -0.186 4.186 8 O -0.206 6.206 9 C -0.049 4.049 10 C -0.223 4.223 11 C 0.078 3.922 12 C -0.401 4.401 13 H 0.098 0.902 14 C 0.069 3.931 15 N -0.792 5.792 16 Si 0.921 3.079 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.382 5.382 21 O 0.068 5.932 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.164 0.836 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 4.537 8.794 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 C -0.205 4.205 4 C -0.108 4.108 5 C -0.267 4.267 6 C 0.007 3.993 7 C -0.236 4.236 8 O -0.108 6.108 9 C -0.117 4.117 10 C -0.243 4.243 11 C 0.073 3.927 12 C -0.431 4.431 13 H 0.116 0.884 14 C -0.150 4.150 15 N -0.418 5.418 16 Si 0.745 3.255 17 H -0.179 1.179 18 H -0.196 1.196 19 H -0.196 1.196 20 N -0.097 5.097 21 O 0.011 5.989 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.175 0.825 30 H 0.193 0.807 31 H 0.181 0.819 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.391 4.801 7.706 9.691 hybrid contribution 0.238 -0.346 -0.138 0.442 sum -3.152 4.455 7.568 9.330 Atomic orbital electron populations 1.21857 0.93837 1.02456 1.02343 1.19607 0.96173 0.95679 0.91169 1.21856 1.01547 0.94747 1.02344 1.23921 1.01003 0.97640 0.88222 1.23338 1.06272 1.00410 0.96725 1.21274 0.96289 0.93325 0.88400 1.18138 1.17378 0.99222 0.88838 1.83431 1.56190 1.34633 1.36576 1.23517 1.02063 0.96666 0.89447 1.23455 1.04197 0.99754 0.96898 1.19326 0.91506 0.91813 0.90097 1.19401 1.24479 1.10121 0.89072 0.88384 1.26144 0.93271 0.94650 1.00925 1.69694 1.28516 1.21825 1.21802 0.86016 0.79546 0.80493 0.79419 1.17865 1.19645 1.19641 1.74339 1.16468 1.06173 1.12716 1.84606 1.57485 1.44925 1.11859 0.91833 0.92006 0.92275 0.88890 0.92278 0.91827 0.92010 0.82498 0.80655 0.81889 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.18 37.16 0.34 -1.29 16 2 C -0.01 -0.08 3.34 -91.78 -0.31 -0.39 16 3 C -0.15 -1.63 9.17 37.15 0.34 -1.29 16 4 C -0.05 -0.82 5.96 -35.40 -0.21 -1.03 16 5 C -0.25 -5.03 11.31 -37.06 -0.42 -5.45 16 6 C 0.16 4.04 7.34 -80.72 -0.59 3.44 16 7 C -0.19 -5.10 7.39 -35.10 -0.26 -5.36 16 8 O -0.21 -5.25 10.55 5.51 0.06 -5.19 16 9 C -0.05 -1.13 11.96 29.27 0.35 -0.78 16 10 C -0.22 -5.77 9.89 -37.45 -0.37 -6.14 16 11 C 0.08 2.23 6.14 -104.47 -0.64 1.59 16 12 C -0.40 -11.33 9.11 -38.02 -0.35 -11.68 16 13 H 0.10 2.82 6.38 -52.48 -0.33 2.48 16 14 C 0.07 1.77 5.50 -17.31 -0.10 1.67 16 15 N -0.79 -20.19 10.45 55.55 0.58 -19.61 16 16 Si 0.92 19.46 29.56 -169.99 -5.02 14.43 16 17 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 N -0.38 -9.56 10.50 34.30 0.36 -9.20 16 21 O 0.07 1.46 11.09 17.29 0.19 1.65 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.01 8.12 -51.93 -0.42 0.59 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.16 2.82 8.06 -52.49 -0.42 2.40 16 30 H 0.18 3.10 8.06 -52.48 -0.42 2.68 16 31 H 0.16 4.19 6.07 -52.49 -0.32 3.87 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -30.88 283.57 -5.36 -36.25 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.59 Total: 4.10 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -2.21 Total: -26.71 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.94 Total: -28.81 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.25 Total: -3.54 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.88 -5.36 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.785 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds