Wall clock time and date at job start Mon Mar 30 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.35160 * 126.48541 * 239.71502 * 4 2 1 6 6 C 1.47153 * 103.27758 * 179.97438 * 5 4 2 7 7 C 1.47028 * 127.41952 * 180.12214 * 6 5 4 8 8 O 1.34480 * 126.24497 * 0.27010 * 7 6 5 9 9 C 1.34196 * 111.01823 * 179.97438 * 8 7 6 10 10 C 1.34069 * 110.09574 * 359.97438 * 9 8 7 11 11 C 1.40689 * 126.24278 * 179.97438 * 7 6 5 12 12 C 1.40618 * 127.45941 * 0.02562 * 11 7 6 13 13 H 1.08003 * 119.99753 * 0.02562 * 12 11 7 14 14 C 1.40002 * 120.00415 * 179.97438 * 12 11 7 15 15 N 1.30843 * 119.99775 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99893 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47533 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47085 * 120.00394 * 16 14 12 19 19 H 1.48503 * 109.46901 * 239.99945 * 16 14 12 20 20 N 1.31761 * 105.15655 * 0.34120 * 6 5 4 21 21 O 1.20759 * 111.44293 * 359.78153 * 20 6 5 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08002 * 128.35893 * 0.02562 * 5 4 2 30 30 H 1.08003 * 124.95231 * 180.02562 * 9 8 7 31 31 H 1.08001 * 126.85966 * 180.02562 * 10 9 8 32 32 H 0.96991 * 119.99746 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8169 -1.8106 -1.2593 6 6 2.9914 -2.0636 -2.6983 7 6 3.7592 -3.1479 -3.3281 8 8 4.4414 -4.1144 -2.6887 9 6 5.0303 -4.9461 -3.5618 10 6 4.7599 -4.5624 -4.8177 11 6 3.9092 -3.3670 -4.7097 12 6 3.3655 -2.6067 -5.7603 13 1 2.7543 -1.7435 -5.5419 14 6 3.6174 -2.9680 -7.0892 15 7 4.3583 -4.0135 -7.3537 16 14 2.8956 -1.9575 -8.4846 17 1 2.1017 -0.8349 -7.9238 18 1 3.9947 -1.4154 -9.3231 19 1 2.0171 -2.8186 -9.3164 20 7 2.3156 -1.1064 -3.3009 21 8 1.7913 -0.3668 -2.5032 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.2181 -2.3697 -0.4269 30 1 5.6333 -5.8005 -3.2922 31 1 5.0965 -5.0379 -5.7270 32 1 4.5325 -4.2640 -8.2744 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259876864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:46 Heat of formation + Delta-G solvation = 30.386856 kcal Electronic energy + Delta-G solvation = -17341.738912 eV Core-core repulsion = 14463.824960 eV Total energy + Delta-G solvation = -2877.913952 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.32299 -42.17912 -36.87592 -36.14086 -34.59389 -32.68224 -31.37762 -30.16739 -27.99407 -27.66076 -24.48457 -23.78385 -22.31826 -21.74054 -20.20869 -18.88501 -18.26633 -17.82118 -17.34858 -16.42890 -16.19400 -16.04938 -15.58252 -14.86085 -14.36088 -14.18854 -14.05816 -13.79492 -13.31815 -13.11208 -12.99188 -12.67036 -12.50378 -12.15891 -12.13643 -11.87375 -11.82797 -11.66491 -11.35025 -11.33558 -10.21985 -10.02135 -8.91338 -8.76879 -6.40870 0.46090 0.89981 1.30985 1.34179 1.47497 1.94699 2.14532 2.19577 2.37720 2.52645 3.30457 3.53469 3.90790 4.01397 4.15722 4.21284 4.47209 4.50547 4.76985 4.83503 4.84534 4.95629 4.99424 5.04830 5.10906 5.13717 5.33254 5.39650 5.42826 5.50257 5.68324 6.01607 6.35324 6.66841 6.70315 7.00695 7.80978 8.18895 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023984 B = 0.006757 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.183653 B = 4142.676984 C = 5124.103926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.021 4.021 5 C -0.258 4.258 6 C 0.122 3.878 7 C -0.216 4.216 8 O -0.207 6.207 9 C -0.026 4.026 10 C -0.256 4.256 11 C 0.039 3.961 12 C -0.443 4.443 13 H 0.079 0.921 14 C 0.031 3.969 15 N -0.809 5.809 16 Si 0.991 3.009 17 H -0.269 1.269 18 H -0.254 1.254 19 H -0.254 1.254 20 N -0.412 5.412 21 O 0.071 5.929 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.051 0.949 25 H 0.121 0.879 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.182 0.818 30 H 0.234 0.766 31 H 0.161 0.839 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 5.154 10.287 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 C -0.203 4.203 4 C -0.084 4.084 5 C -0.279 4.279 6 C -0.031 4.031 7 C -0.265 4.265 8 O -0.109 6.109 9 C -0.093 4.093 10 C -0.277 4.277 11 C 0.034 3.966 12 C -0.473 4.473 13 H 0.097 0.903 14 C -0.186 4.186 15 N -0.436 5.436 16 Si 0.811 3.189 17 H -0.193 1.193 18 H -0.178 1.178 19 H -0.178 1.178 20 N -0.126 5.126 21 O 0.012 5.988 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.116 0.884 29 H 0.199 0.801 30 H 0.250 0.750 31 H 0.178 0.822 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.809 5.386 9.196 11.317 hybrid contribution 0.351 -0.504 -0.436 0.753 sum -3.458 4.882 8.760 10.608 Atomic orbital electron populations 1.21873 0.92360 1.02457 1.03626 1.19995 0.97310 0.96333 0.88910 1.21872 1.01161 0.93660 1.03627 1.24949 0.98610 0.96526 0.88268 1.23599 1.07493 1.01739 0.95050 1.21634 0.97053 0.93456 0.90960 1.18576 1.18455 1.00412 0.89104 1.83419 1.55942 1.34517 1.36977 1.24431 1.00175 0.96509 0.88202 1.23483 1.05816 1.00137 0.98248 1.19846 0.92596 0.93166 0.91008 1.19481 1.26315 1.10677 0.90832 0.90267 1.26950 0.93410 0.95771 1.02421 1.69691 1.28421 1.22308 1.23169 0.85022 0.79146 0.78550 0.76221 1.19286 1.17846 1.17832 1.74346 1.16891 1.06725 1.14592 1.84543 1.56794 1.44154 1.13319 0.92903 0.88440 0.92953 0.86149 0.92952 0.92897 0.88444 0.80114 0.74978 0.82157 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.18 71.98 0.66 -2.09 16 2 C -0.01 -0.14 3.34 -11.54 -0.04 -0.18 16 3 C -0.15 -2.76 9.17 71.98 0.66 -2.10 16 4 C -0.02 -0.74 5.96 24.98 0.15 -0.59 16 5 C -0.26 -10.42 11.31 23.90 0.27 -10.15 16 6 C 0.12 6.36 7.34 43.80 0.32 6.68 16 7 C -0.22 -12.30 7.39 25.18 0.19 -12.12 16 8 O -0.21 -10.59 10.55 -3.18 -0.03 -10.62 16 9 C -0.03 -1.16 11.96 66.87 0.80 -0.37 16 10 C -0.26 -13.63 9.89 23.65 0.23 -13.40 16 11 C 0.04 2.34 6.14 -19.77 -0.12 2.22 16 12 C -0.44 -26.41 9.11 23.28 0.21 -26.20 16 13 H 0.08 4.86 6.38 -2.91 -0.02 4.84 16 14 C 0.03 1.64 5.50 85.27 0.47 2.11 16 15 N -0.81 -42.07 10.45 21.84 0.23 -41.84 16 16 Si 0.99 40.64 29.56 68.60 2.03 42.67 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 18 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 20 N -0.41 -21.43 10.50 -45.96 -0.48 -21.91 16 21 O 0.07 3.06 11.09 72.07 0.80 3.86 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 23 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.12 2.08 8.12 -2.39 -0.02 2.06 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.18 6.23 8.06 -2.91 -0.02 6.21 16 30 H 0.23 7.50 8.06 -2.91 -0.02 7.47 16 31 H 0.16 8.47 6.07 -2.91 -0.02 8.45 16 32 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 Total: -1.00 -71.82 283.57 7.47 -64.35 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 1.13 Total: 19.70 kcal Atomic # 6 Polarization: -59.99 SS G_CDS: 3.80 Total: -56.19 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.25 Total: -63.75 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.77 Total: -6.77 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -71.82 7.47 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259876864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.733 kcal (2) G-P(sol) polarization free energy of solvation -71.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds