Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34493 * 126.33853 * 2 1 4 4 N 1.34200 * 107.88488 * 179.77591 * 3 2 1 5 5 C 1.31482 * 108.62455 * 0.36801 * 4 3 2 6 6 C 1.47132 * 125.76083 * 179.89785 * 5 4 3 7 7 C 1.36429 * 126.80388 * 179.73501 * 6 5 4 8 8 N 1.33620 * 107.84268 * 179.97438 * 7 6 5 9 9 C 1.30673 * 109.62964 * 359.75829 * 8 7 6 10 10 C 1.50700 * 125.46654 * 180.23338 * 9 8 7 11 11 C 1.53001 * 109.47024 * 305.17976 * 10 9 8 12 12 C 1.50700 * 109.47024 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00183 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99935 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00030 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00091 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47024 * 90.00452 * 16 14 12 18 18 H 1.48498 * 109.46942 * 210.00513 * 16 14 12 19 19 H 1.48496 * 109.47024 * 330.00254 * 16 14 12 20 20 N 1.34949 * 109.07036 * 0.39116 * 9 8 7 21 21 H 0.97001 * 126.47192 * 179.88943 * 20 9 8 22 22 O 1.34529 * 108.48433 * 359.63023 * 5 4 3 23 23 H 1.08992 * 109.46893 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46821 * 299.97670 * 1 2 3 25 25 H 1.09001 * 109.46703 * 59.97662 * 1 2 3 26 26 H 1.07999 * 126.05408 * 0.02562 * 3 2 1 27 27 H 1.07995 * 126.07600 * 359.97438 * 7 6 5 28 28 H 1.08995 * 109.47207 * 65.17944 * 10 9 8 29 29 H 1.09004 * 109.46730 * 185.17938 * 10 9 8 30 30 H 1.09011 * 109.46749 * 299.99882 * 11 10 9 31 31 H 1.08994 * 109.47086 * 59.99912 * 11 10 9 32 32 H 0.97003 * 119.99839 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3040 1.0834 0.0000 4 7 3.5769 0.6586 0.0050 5 6 3.5809 -0.6562 0.0001 6 6 4.7774 -1.5125 0.0009 7 6 4.8063 -2.8765 0.0009 8 7 6.0866 -3.2588 0.0012 9 6 6.8594 -2.2051 -0.0038 10 6 8.3663 -2.2259 -0.0101 11 6 8.8697 -3.0621 1.1682 12 6 10.3766 -3.0834 1.1615 13 1 10.9207 -2.5533 0.3939 14 6 11.0605 -3.7789 2.1359 15 7 10.3978 -4.4240 3.0710 16 14 12.9283 -3.8059 2.1272 17 1 13.4436 -2.6670 2.9288 18 1 13.4075 -5.0823 2.7157 19 1 13.4185 -3.6901 0.7303 20 7 6.0918 -1.0953 0.0012 21 1 6.4053 -0.1773 0.0007 22 8 2.3063 -1.0866 0.0001 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5142 -0.8898 26 1 1.9773 2.1128 0.0004 27 1 3.9471 -3.5308 0.0007 28 1 8.7197 -2.6638 -0.9436 29 1 8.7441 -1.2074 0.0794 30 1 8.5163 -2.6241 2.1018 31 1 8.4919 -4.0805 1.0787 32 1 10.8790 -4.9136 3.7563 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = 64.589861 kcal Electronic energy + Delta-G solvation = -16533.556856 eV Core-core repulsion = 13689.418809 eV Total energy + Delta-G solvation = -2844.138047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.38855 -41.75929 -34.89682 -34.08872 -33.01866 -32.27471 -31.66373 -29.26880 -26.64904 -25.14714 -22.85267 -22.21487 -21.55454 -20.90647 -19.81335 -17.93895 -16.92231 -16.60042 -16.13028 -14.95116 -14.83014 -14.48891 -14.39172 -13.65586 -13.59778 -13.45042 -13.03693 -12.75670 -12.65447 -12.19527 -11.56687 -11.16289 -10.95739 -10.71641 -10.64691 -10.13736 -9.95095 -9.80457 -9.64097 -9.30637 -9.14646 -8.34772 -7.73950 -5.99280 -4.03305 0.88271 2.02534 2.12246 2.86745 3.32933 3.38729 3.40541 3.42582 3.43748 3.90659 4.45868 4.53555 4.77305 4.86064 4.91902 5.06132 5.25197 5.35883 5.36610 5.53503 5.66440 5.82042 5.99449 6.12722 6.28953 6.37860 6.76603 6.80548 7.49005 7.55360 7.66502 7.81214 8.01127 8.29397 8.36235 9.03498 9.60601 11.11721 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.064025 B = 0.003611 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.224516 B = 7751.552275 C = 7881.481077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.058 4.058 3 C -0.033 4.033 4 N -0.491 5.491 5 C 0.286 3.714 6 C -0.003 4.003 7 C 0.050 3.950 8 N -0.484 5.484 9 C 0.277 3.723 10 C -0.038 4.038 11 C 0.032 3.968 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.894 3.106 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 N -0.545 5.545 21 H 0.425 0.575 22 O -0.189 6.189 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.184 0.816 27 H 0.177 0.823 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.035 0.965 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.136 9.670 -6.735 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.173 4.173 4 N -0.220 5.220 5 C 0.083 3.917 6 C -0.118 4.118 7 C -0.106 4.106 8 N -0.203 5.203 9 C 0.013 3.987 10 C -0.077 4.077 11 C -0.006 4.006 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 N -0.149 5.149 21 H 0.264 0.736 22 O -0.075 6.075 23 H 0.097 0.903 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.202 0.798 27 H 0.194 0.806 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.341 9.074 -6.570 20.645 hybrid contribution 0.093 0.996 0.181 1.017 sum -17.248 10.070 -6.389 20.969 Atomic orbital electron populations 1.20257 0.83767 1.04427 1.03759 1.23511 0.94971 0.84243 1.08409 1.23011 0.87683 1.00351 1.06274 1.70773 1.23069 1.08169 1.19998 1.22061 0.82088 0.87624 0.99969 1.17124 0.80924 0.92185 1.21551 1.22651 0.95912 0.90169 1.01892 1.70334 1.00634 1.28595 1.20700 1.24353 0.96786 0.79929 0.97611 1.20563 0.80681 1.02529 1.03948 1.19056 0.95460 0.95541 0.90509 1.21173 0.91335 1.31994 1.11934 0.92444 1.25007 0.98451 0.95335 0.95503 1.69982 1.35441 1.32724 1.14766 0.86575 0.85678 0.77390 0.78227 1.20731 1.21198 1.19808 1.43140 1.04331 1.10950 1.56489 0.73565 1.84471 1.16655 1.36096 1.70317 0.90266 0.89341 0.89370 0.79844 0.80589 0.89496 0.91221 0.96557 0.94645 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 36.01 0.38 0.00 16 2 C -0.06 -0.62 7.38 -35.63 -0.26 -0.88 16 3 C -0.03 -0.38 11.79 -17.84 -0.21 -0.59 16 4 N -0.49 -7.26 11.34 -11.86 -0.13 -7.39 16 5 C 0.29 4.35 8.15 -14.09 -0.11 4.24 16 6 C 0.00 -0.05 7.18 -82.18 -0.59 -0.64 16 7 C 0.05 0.84 11.86 -17.43 -0.21 0.63 16 8 N -0.48 -9.66 11.16 -10.51 -0.12 -9.77 16 9 C 0.28 5.21 7.41 -155.36 -1.15 4.06 16 10 C -0.04 -0.75 5.78 -27.88 -0.16 -0.91 16 11 C 0.03 0.83 4.92 -27.88 -0.14 0.69 16 12 C -0.53 -14.53 9.11 -34.44 -0.31 -14.84 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 N -0.55 -8.82 6.20 -6.96 -0.04 -8.86 16 21 H 0.43 5.86 8.96 -40.82 -0.37 5.49 16 22 O -0.19 -2.57 10.81 3.46 0.04 -2.53 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 28 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 291.24 15.07 4.39 4.39 Total: -1.00 -33.27 291.24 -6.74 -40.00 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -3.71 Total: 0.53 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.87 Total: -6.67 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.44 Total: -52.11 kcal Atomic # 8 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.27 -6.74 -40.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.591 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds