Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48492 * 109.47351 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.46955 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47008 * 149.99739 * 3 2 1 7 7 C 1.37878 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99850 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.45943 * 60.02292 * 9 7 2 11 11 C 1.53035 * 109.46014 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.28189 * 60.83348 * 11 9 7 13 13 H 1.09001 * 109.52084 * 297.74913 * 12 11 9 14 14 C 1.50700 * 109.57875 * 177.58887 * 12 11 9 15 15 C 1.38269 * 119.94553 * 300.01393 * 14 12 11 16 16 C 1.38141 * 120.05538 * 179.71983 * 15 14 12 17 17 C 1.38730 * 119.94624 * 0.55031 * 16 15 14 18 18 O 1.35900 * 120.05853 * 179.74518 * 17 16 15 19 19 C 1.38737 * 119.88486 * 359.71989 * 17 16 15 20 20 C 1.38137 * 119.94582 * 0.02562 * 19 17 16 21 21 C 1.53126 * 109.16071 * 57.65474 * 12 11 9 22 22 C 1.53034 * 109.27454 * 302.34640 * 21 12 11 23 23 N 1.46847 * 109.52486 * 59.18079 * 22 21 12 24 24 H 0.96994 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.50219 * 300.88873 * 11 9 7 26 26 H 1.09009 * 109.50165 * 180.77200 * 11 9 7 27 27 H 1.08000 * 119.96973 * 359.97438 * 15 14 12 28 28 H 1.08007 * 120.02751 * 180.26920 * 16 15 14 29 29 H 0.96705 * 113.99878 * 269.97447 * 18 17 16 30 30 H 1.08005 * 120.02329 * 179.97438 * 19 17 16 31 31 H 1.07999 * 119.97422 * 180.02562 * 20 19 17 32 32 H 1.08997 * 109.50129 * 62.28942 * 21 12 11 33 33 H 1.09006 * 109.50177 * 182.40700 * 21 12 11 34 34 H 1.08999 * 109.45899 * 179.20018 * 22 21 12 35 35 H 1.09006 * 109.46754 * 299.15875 * 22 21 12 36 36 H 1.00897 * 110.99907 * 62.35214 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6251 -2.5570 -0.8900 11 6 2.2457 -3.6621 0.0005 12 6 3.1096 -3.5886 1.2625 13 1 3.6835 -2.6619 1.2576 14 6 4.0518 -4.7642 1.2988 15 6 3.5483 -6.0519 1.3140 16 6 4.4100 -7.1314 1.3415 17 6 5.7812 -6.9224 1.3653 18 8 6.6308 -7.9826 1.3975 19 6 6.2837 -5.6293 1.3556 20 6 5.4180 -4.5533 1.3228 21 6 2.2022 -3.6219 2.4955 22 6 1.2088 -2.4600 2.4231 23 7 0.4060 -2.5762 1.1990 24 1 -0.4849 0.8400 -0.0004 25 1 2.8831 -3.5958 -0.8812 26 1 1.7014 -4.6065 -0.0133 27 1 2.4807 -6.2140 1.3003 28 1 4.0163 -8.1371 1.3489 29 1 6.8597 -8.2762 2.2900 30 1 7.3509 -5.4641 1.3745 31 1 5.8087 -3.5465 1.3149 32 1 1.6573 -4.5656 2.5208 33 1 2.8085 -3.5268 3.3963 34 1 0.5519 -2.4893 3.2925 35 1 1.7540 -1.5162 2.4118 36 1 -0.1390 -3.4253 1.2032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259905867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = -26.064983 kcal Electronic energy + Delta-G solvation = -17970.534573 eV Core-core repulsion = 15226.005780 eV Total energy + Delta-G solvation = -2744.528793 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.84201 -38.11979 -36.34074 -32.64849 -31.52413 -30.87707 -29.78071 -27.94962 -25.17043 -23.20354 -22.61616 -21.61210 -20.63603 -18.96056 -18.36338 -16.05146 -15.82576 -15.61848 -15.21876 -14.47557 -14.31180 -13.81404 -13.37071 -13.28796 -13.00879 -12.80695 -12.46780 -11.98459 -11.77714 -11.67914 -11.25930 -10.85992 -10.70617 -10.57524 -10.47015 -10.34616 -10.12535 -9.56569 -9.49431 -8.87496 -8.82490 -8.35643 -8.16889 -6.73469 -5.83147 -3.94822 1.37898 1.47789 3.34226 3.41927 3.43479 3.75788 4.25610 4.50328 4.97292 5.05693 5.13927 5.38136 5.51360 5.58246 5.67960 5.75665 5.84131 5.96024 6.11522 6.15542 6.27092 6.36250 6.43925 6.50948 6.54041 6.65054 6.69875 6.91557 6.95821 7.02879 7.06118 7.22922 7.64139 7.64747 7.92960 8.25456 8.65496 8.93709 9.24078 9.71631 11.21748 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035364 B = 0.005760 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.571285 B = 4859.582862 C = 5277.037968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.082 3.918 3 Si 0.876 3.124 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.217 3.783 10 H 0.039 0.961 11 C -0.132 4.132 12 C -0.041 4.041 13 H 0.087 0.913 14 C -0.065 4.065 15 C -0.101 4.101 16 C -0.144 4.144 17 C 0.082 3.918 18 O -0.502 6.502 19 C -0.144 4.144 20 C -0.105 4.105 21 C -0.140 4.140 22 C 0.075 3.925 23 N -0.649 5.649 24 H 0.254 0.746 25 H 0.052 0.948 26 H 0.034 0.966 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.384 0.616 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -11.422 5.475 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.124 4.124 3 Si 0.704 3.296 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.109 3.891 10 H 0.057 0.943 11 C -0.171 4.171 12 C -0.060 4.060 13 H 0.105 0.895 14 C -0.066 4.066 15 C -0.119 4.119 16 C -0.163 4.163 17 C 0.038 3.962 18 O -0.312 6.312 19 C -0.162 4.162 20 C -0.123 4.123 21 C -0.180 4.180 22 C -0.055 4.055 23 N -0.275 5.275 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.239 0.761 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.728 -10.572 4.834 13.959 hybrid contribution 1.105 -0.087 0.545 1.235 sum 8.832 -10.659 5.380 14.851 Atomic orbital electron populations 1.70092 1.05603 1.25449 1.47192 1.24937 0.94553 0.98326 0.94571 0.86895 0.80070 0.84707 0.77976 1.20865 1.21373 1.20124 1.20877 0.92071 0.90138 1.53532 0.92931 1.19157 0.88967 0.91434 0.89520 0.94269 1.22361 0.99178 0.99794 0.95790 1.20198 0.94842 0.94667 0.96279 0.89483 1.20390 0.94298 0.95511 0.96355 1.20928 0.99672 0.91708 0.99568 1.21354 0.92617 0.99455 1.02856 1.18416 0.88542 0.86350 1.02871 1.84832 1.65475 1.48048 1.32823 1.21358 1.00102 0.91985 1.02767 1.21051 0.92784 0.98709 0.99776 1.22336 0.98785 1.00327 0.96555 1.21738 0.93585 0.97463 0.92744 1.60798 1.26005 1.38955 1.01776 0.93597 0.92911 0.94709 0.85832 0.85961 0.76148 0.85910 0.85635 0.93488 0.93265 0.93799 0.90078 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.24 12.77 55.43 0.71 -23.54 16 2 C 0.08 2.24 5.39 -17.82 -0.10 2.14 16 3 Si 0.88 20.92 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.82 6.47 -34.44 -0.22 -14.05 16 8 H 0.05 1.37 6.76 -52.49 -0.35 1.02 16 9 C 0.22 5.17 2.95 -68.88 -0.20 4.97 16 10 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.13 -2.62 4.69 -26.65 -0.12 -2.75 16 12 C -0.04 -0.75 2.17 -91.65 -0.20 -0.95 16 13 H 0.09 1.74 6.47 -51.93 -0.34 1.40 16 14 C -0.07 -1.04 4.79 -104.60 -0.50 -1.54 16 15 C -0.10 -1.47 8.66 -39.61 -0.34 -1.82 16 16 C -0.14 -1.93 9.99 -39.44 -0.39 -2.32 16 17 C 0.08 1.09 6.71 -39.22 -0.26 0.83 16 18 O -0.50 -5.79 13.50 -19.43 -0.26 -6.05 16 19 C -0.14 -1.93 9.99 -39.43 -0.39 -2.32 16 20 C -0.11 -1.55 9.66 -39.61 -0.38 -1.94 16 21 C -0.14 -2.43 5.21 -26.65 -0.14 -2.57 16 22 C 0.08 1.53 6.30 -3.84 -0.02 1.51 16 23 N -0.65 -14.73 5.98 -107.99 -0.65 -15.37 16 24 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.64 7.32 -51.92 -0.38 0.26 16 27 H 0.12 1.72 7.05 -52.49 -0.37 1.35 16 28 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.38 2.47 9.06 45.56 0.41 2.88 16 30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.13 1.74 7.94 -52.49 -0.42 1.32 16 32 H 0.05 0.76 7.30 -51.93 -0.38 0.38 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.88 6.99 -51.93 -0.36 1.52 16 36 H 0.30 6.12 8.86 -39.29 -0.35 5.77 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -29.53 290.84 -8.33 -37.86 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.21 Total: 7.63 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.29 Total: -20.80 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.06 Total: -38.91 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.26 Total: -6.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.53 -8.33 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.793 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds