Wall clock time and date at job start Mon Mar 30 2020 06:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48492 * 109.47351 * 270.00196 * 3 2 1 5 5 H 1.48500 * 109.46955 * 30.00039 * 3 2 1 6 6 H 1.48502 * 109.47008 * 149.99739 * 3 2 1 7 7 C 1.37878 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99880 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99850 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.45943 * 60.02292 * 9 7 2 11 11 C 1.53035 * 109.46014 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.28189 * 60.83348 * 11 9 7 13 13 H 1.09001 * 109.52084 * 297.74913 * 12 11 9 14 14 C 1.50700 * 109.57875 * 177.58887 * 12 11 9 15 15 C 1.38269 * 119.94553 * 300.01393 * 14 12 11 16 16 C 1.38141 * 120.05538 * 179.71983 * 15 14 12 17 17 C 1.38730 * 119.94624 * 0.55031 * 16 15 14 18 18 O 1.35900 * 120.05853 * 179.74518 * 17 16 15 19 19 C 1.38737 * 119.88486 * 359.71989 * 17 16 15 20 20 C 1.38137 * 119.94582 * 0.02562 * 19 17 16 21 21 C 1.53126 * 109.16071 * 57.65474 * 12 11 9 22 22 C 1.53034 * 109.27454 * 302.34640 * 21 12 11 23 23 N 1.46847 * 109.52486 * 59.18079 * 22 21 12 24 24 H 0.96994 * 119.99781 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.50219 * 300.88873 * 11 9 7 26 26 H 1.09009 * 109.50165 * 180.77200 * 11 9 7 27 27 H 1.08000 * 119.96973 * 359.97438 * 15 14 12 28 28 H 1.08007 * 120.02751 * 180.26920 * 16 15 14 29 29 H 0.96705 * 113.99878 * 269.97447 * 18 17 16 30 30 H 1.08005 * 120.02329 * 179.97438 * 19 17 16 31 31 H 1.07999 * 119.97422 * 180.02562 * 20 19 17 32 32 H 1.08997 * 109.50129 * 62.28942 * 21 12 11 33 33 H 1.09006 * 109.50177 * 182.40700 * 21 12 11 34 34 H 1.08999 * 109.45899 * 179.20018 * 22 21 12 35 35 H 1.09006 * 109.46754 * 299.15875 * 22 21 12 36 36 H 1.00897 * 110.99907 * 62.35214 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6251 -2.5570 -0.8900 11 6 2.2457 -3.6621 0.0005 12 6 3.1096 -3.5886 1.2625 13 1 3.6835 -2.6619 1.2576 14 6 4.0518 -4.7642 1.2988 15 6 3.5483 -6.0519 1.3140 16 6 4.4100 -7.1314 1.3415 17 6 5.7812 -6.9224 1.3653 18 8 6.6308 -7.9826 1.3975 19 6 6.2837 -5.6293 1.3556 20 6 5.4180 -4.5533 1.3228 21 6 2.2022 -3.6219 2.4955 22 6 1.2088 -2.4600 2.4231 23 7 0.4060 -2.5762 1.1990 24 1 -0.4849 0.8400 -0.0004 25 1 2.8831 -3.5958 -0.8812 26 1 1.7014 -4.6065 -0.0133 27 1 2.4807 -6.2140 1.3003 28 1 4.0163 -8.1371 1.3489 29 1 6.8597 -8.2762 2.2900 30 1 7.3509 -5.4641 1.3745 31 1 5.8087 -3.5465 1.3149 32 1 1.6573 -4.5656 2.5208 33 1 2.8085 -3.5268 3.3963 34 1 0.5519 -2.4893 3.2925 35 1 1.7540 -1.5162 2.4118 36 1 -0.1390 -3.4253 1.2032 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905867.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:51 Heat of formation + Delta-G solvation = -46.108704 kcal Electronic energy + Delta-G solvation = -17971.403734 eV Core-core repulsion = 15226.005780 eV Total energy + Delta-G solvation = -2745.397954 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99569 -39.50403 -37.50290 -34.49355 -33.10306 -31.92727 -31.52213 -29.23201 -27.15875 -24.52399 -23.76736 -23.20872 -22.04691 -20.61927 -19.31725 -17.94466 -17.16851 -16.88185 -16.40559 -16.24055 -15.67386 -15.04242 -15.02639 -14.76472 -14.32782 -14.19771 -13.96390 -13.50341 -13.16183 -13.05277 -12.81765 -12.73172 -12.47942 -12.16667 -12.00320 -11.80902 -11.39958 -11.32942 -11.11196 -10.76429 -10.39216 -9.91609 -9.32935 -8.47678 -7.91037 -6.07757 0.31385 0.42265 1.42471 1.44869 1.52281 2.49626 2.71259 3.31322 3.33797 3.80855 3.89542 4.07860 4.08835 4.26387 4.31401 4.48708 4.55632 4.64295 4.66177 4.81461 4.93372 5.01072 5.04856 5.14074 5.20694 5.28893 5.34406 5.45448 5.47485 5.55580 5.68717 5.84480 5.85939 5.94009 6.27685 6.75845 6.88809 7.05191 7.40305 7.61549 9.12653 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035364 B = 0.005760 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.571285 B = 4859.582862 C = 5277.037968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.035 3.965 3 Si 0.934 3.066 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.217 3.783 10 H 0.002 0.998 11 C -0.120 4.120 12 C -0.031 4.031 13 H 0.061 0.939 14 C -0.085 4.085 15 C -0.104 4.104 16 C -0.146 4.146 17 C 0.089 3.911 18 O -0.508 6.508 19 C -0.147 4.147 20 C -0.114 4.114 21 C -0.128 4.128 22 C 0.079 3.921 23 N -0.669 5.669 24 H 0.252 0.748 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.408 0.592 30 H 0.142 0.858 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 -13.085 6.422 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.168 4.168 3 Si 0.761 3.239 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.066 0.934 9 C 0.109 3.891 10 H 0.020 0.980 11 C -0.160 4.160 12 C -0.050 4.050 13 H 0.080 0.920 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.164 4.164 17 C 0.045 3.955 18 O -0.321 6.321 19 C -0.165 4.165 20 C -0.132 4.132 21 C -0.168 4.168 22 C -0.051 4.051 23 N -0.296 5.296 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.161 0.839 29 H 0.267 0.733 30 H 0.160 0.840 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.205 -12.251 5.803 16.386 hybrid contribution 0.707 0.328 0.254 0.820 sum 9.912 -11.923 6.057 16.646 Atomic orbital electron populations 1.70220 1.06888 1.25877 1.48872 1.25584 0.95248 1.01319 0.94614 0.85963 0.79014 0.81074 0.77892 1.20608 1.21422 1.19512 1.21159 0.92011 0.91404 1.52310 0.93383 1.18962 0.89200 0.92191 0.88791 0.97990 1.22154 0.98465 0.98764 0.96615 1.19958 0.94771 0.94852 0.95404 0.92013 1.20160 0.94294 0.95078 0.98938 1.20998 1.00256 0.91430 0.99494 1.21569 0.92612 1.00073 1.02192 1.18520 0.88843 0.86722 1.01437 1.84771 1.64984 1.47291 1.35087 1.21548 1.00925 0.91740 1.02286 1.21137 0.92662 0.99411 1.00008 1.22190 0.98124 0.99558 0.96909 1.21651 0.94077 0.97247 0.92173 1.60574 1.26796 1.40130 1.02094 0.93929 0.94092 0.93017 0.85266 0.83867 0.73284 0.84050 0.85576 0.91650 0.91680 0.92303 0.93406 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.61 12.77 21.45 0.27 -51.33 16 2 C 0.04 1.95 5.39 84.65 0.46 2.40 16 3 Si 0.93 43.69 29.54 68.60 2.03 45.72 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.53 -28.44 6.47 25.60 0.17 -28.28 16 8 H 0.05 2.57 6.76 -2.91 -0.02 2.55 16 9 C 0.22 10.58 2.95 44.19 0.13 10.71 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.12 -4.80 4.69 30.64 0.14 -4.66 16 12 C -0.03 -1.11 2.17 -11.46 -0.02 -1.14 16 13 H 0.06 2.49 6.47 -2.39 -0.02 2.47 16 14 C -0.08 -2.56 4.79 -19.85 -0.10 -2.66 16 15 C -0.10 -2.78 8.66 22.25 0.19 -2.59 16 16 C -0.15 -3.44 9.99 22.36 0.22 -3.22 16 17 C 0.09 2.08 6.71 22.51 0.15 2.24 16 18 O -0.51 -9.83 13.50 -92.43 -1.25 -11.08 16 19 C -0.15 -3.56 9.99 22.37 0.22 -3.33 16 20 C -0.11 -3.20 9.66 22.25 0.22 -2.98 16 21 C -0.13 -4.26 5.21 30.65 0.16 -4.10 16 22 C 0.08 3.18 6.30 86.32 0.54 3.73 16 23 N -0.67 -30.59 5.98 -495.56 -2.96 -33.56 16 24 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.86 7.32 -2.38 -0.02 1.84 16 27 H 0.13 3.25 7.05 -2.91 -0.02 3.23 16 28 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.41 3.63 9.06 -74.05 -0.67 2.96 16 30 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.13 3.41 7.94 -2.91 -0.02 3.39 16 32 H 0.06 1.95 7.30 -2.39 -0.02 1.93 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 2.24 6.99 -2.38 -0.02 2.23 16 36 H 0.31 12.68 8.86 -89.70 -0.79 11.89 16 Total: -1.00 -63.51 290.84 0.20 -63.30 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.37 Total: 20.82 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 2.48 Total: -33.87 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -2.69 Total: -84.89 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.25 Total: -11.08 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.51 0.20 -63.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905867.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.196 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds