Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99799 * 3 2 1 5 5 H 1.48503 * 109.47071 * 29.99604 * 3 2 1 6 6 H 1.48495 * 109.47016 * 149.99870 * 3 2 1 7 7 C 1.37876 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99831 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46283 * 60.01967 * 9 7 2 11 11 C 1.53038 * 109.46226 * 179.97438 * 9 7 2 12 12 C 1.53127 * 109.27941 * 179.19621 * 11 9 7 13 13 H 1.09004 * 109.51868 * 62.24855 * 12 11 9 14 14 C 1.50697 * 109.57623 * 182.41059 * 12 11 9 15 15 C 1.38262 * 119.94116 * 59.43947 * 14 12 11 16 16 C 1.38152 * 120.05207 * 179.72468 * 15 14 12 17 17 C 1.38731 * 119.94107 * 0.55169 * 16 15 14 18 18 O 1.35902 * 120.05143 * 179.74501 * 17 16 15 19 19 C 1.38726 * 119.89100 * 359.72370 * 17 16 15 20 20 C 1.38142 * 119.94340 * 359.97438 * 19 17 16 21 21 C 1.53117 * 109.15989 * 302.34585 * 12 11 9 22 22 C 1.53044 * 109.27792 * 57.65607 * 21 12 11 23 23 N 1.46830 * 109.46943 * 300.04724 * 9 7 2 24 24 H 0.96998 * 120.00511 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.50308 * 59.25834 * 11 9 7 26 26 H 1.08996 * 109.53785 * 299.15667 * 11 9 7 27 27 H 1.08000 * 119.97964 * 0.02562 * 15 14 12 28 28 H 1.07998 * 120.02851 * 180.27465 * 16 15 14 29 29 H 0.96694 * 114.00516 * 269.97882 * 18 17 16 30 30 H 1.08001 * 120.02768 * 179.97438 * 19 17 16 31 31 H 1.08007 * 119.97162 * 180.02562 * 20 19 17 32 32 H 1.09001 * 109.50874 * 297.71787 * 21 12 11 33 33 H 1.09000 * 109.50461 * 177.59307 * 21 12 11 34 34 H 1.09002 * 109.46396 * 60.83566 * 22 21 12 35 35 H 1.08994 * 109.46485 * 180.81491 * 22 21 12 36 36 H 1.00904 * 110.98205 * 54.13905 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6252 -2.5571 -0.8899 11 6 2.2459 -3.6621 0.0005 12 6 1.4762 -4.9857 0.0208 13 1 0.8699 -5.0683 -0.8813 14 6 2.4493 -6.1348 0.0806 15 6 3.3333 -6.2361 1.1389 16 6 4.2225 -7.2917 1.1990 17 6 4.2357 -8.2442 0.1904 18 8 5.1130 -9.2807 0.2446 19 6 3.3516 -8.1371 -0.8732 20 6 2.4601 -7.0831 -0.9255 21 6 0.5677 -5.0199 1.2529 22 6 -0.3784 -3.8175 1.2165 23 7 0.4057 -2.5761 1.1985 24 1 -0.4851 0.8400 -0.0004 25 1 2.8815 -3.5973 0.8836 26 1 2.8631 -3.6138 -0.8965 27 1 3.3254 -5.4922 1.9218 28 1 4.9098 -7.3729 2.0281 29 1 5.9606 -9.1015 -0.1849 30 1 3.3602 -8.8772 -1.6598 31 1 1.7713 -6.9995 -1.7532 32 1 1.1769 -4.9763 2.1557 33 1 -0.0146 -5.9413 1.2502 34 1 -0.9970 -3.8690 0.3205 35 1 -1.0169 -3.8309 2.0998 36 1 -0.1942 -1.7679 1.2699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259905873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = -34.160528 kcal Electronic energy + Delta-G solvation = -17699.158240 eV Core-core repulsion = 14954.278397 eV Total energy + Delta-G solvation = -2744.879842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81983 -37.95709 -36.26692 -33.10515 -31.60526 -30.87753 -29.84042 -28.09366 -25.17720 -23.28697 -22.67195 -21.51743 -20.60992 -18.62972 -18.33455 -16.69420 -15.68963 -15.48359 -15.13839 -14.85044 -14.31567 -13.81777 -13.54608 -13.34666 -12.93062 -12.66751 -12.61400 -11.98200 -11.84893 -11.83913 -11.44411 -10.95709 -10.82000 -10.55047 -10.46596 -10.34014 -10.11047 -9.78210 -9.28409 -9.03721 -8.85961 -8.59952 -8.20098 -6.85683 -6.09705 -4.12743 1.36897 1.48037 3.28982 3.36005 3.40082 3.74744 4.27176 4.40358 4.94863 5.05900 5.11254 5.15900 5.45491 5.56504 5.66694 5.68005 5.82342 5.94368 6.04813 6.17266 6.25095 6.29893 6.41727 6.50740 6.53162 6.61834 6.72050 6.80035 6.87466 6.94940 7.01228 7.07421 7.54883 7.64999 7.88364 8.19721 8.68887 9.00218 9.14628 9.55410 11.00313 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034715 B = 0.005149 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.383527 B = 5436.327137 C = 5866.436777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.216 3.784 10 H -0.006 1.006 11 C -0.092 4.092 12 C -0.054 4.054 13 H 0.068 0.932 14 C -0.065 4.065 15 C -0.096 4.096 16 C -0.143 4.143 17 C 0.084 3.916 18 O -0.503 6.503 19 C -0.145 4.145 20 C -0.107 4.107 21 C -0.100 4.100 22 C 0.055 3.945 23 N -0.685 5.685 24 H 0.264 0.736 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.385 0.615 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.011 0.989 35 H 0.053 0.947 36 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -13.064 -0.177 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.108 3.892 10 H 0.012 0.988 11 C -0.130 4.130 12 C -0.073 4.073 13 H 0.086 0.914 14 C -0.065 4.065 15 C -0.114 4.114 16 C -0.162 4.162 17 C 0.040 3.960 18 O -0.313 6.313 19 C -0.163 4.163 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.075 4.075 23 N -0.322 5.322 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.240 0.760 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.962 -13.459 0.526 14.354 hybrid contribution 0.129 1.241 -0.986 1.590 sum 5.091 -12.219 -0.460 13.245 Atomic orbital electron populations 1.69668 1.06029 1.27000 1.51619 1.25006 0.94900 0.99334 0.94348 0.86504 0.79880 0.83076 0.77960 1.20801 1.21214 1.19832 1.21189 0.93120 0.90176 1.49751 0.92228 1.18982 0.90411 0.92115 0.87703 0.98846 1.21698 0.98358 0.92304 1.00659 1.20379 0.94869 0.93154 0.98887 0.91386 1.20181 0.96502 0.95911 0.93885 1.21008 0.94626 0.97277 0.98445 1.21386 1.00956 0.94351 0.99476 1.18428 0.93852 0.88724 0.94985 1.84816 1.28177 1.37573 1.80709 1.21326 0.97892 0.98963 0.98167 1.20997 0.98789 0.93931 0.98780 1.21591 0.97557 0.97173 0.97496 1.21796 0.94534 0.92834 0.98371 1.60770 1.25774 1.03189 1.42481 0.92656 0.92222 0.93204 0.85222 0.85802 0.76007 0.85933 0.85839 0.91618 0.93204 0.97071 0.92870 0.81287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 11.48 55.43 0.64 -24.53 16 2 C 0.07 1.77 5.32 -17.82 -0.09 1.68 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.50 -13.70 8.76 -34.44 -0.30 -14.00 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.22 5.36 2.39 -68.89 -0.16 5.20 16 10 H -0.01 -0.16 8.14 -51.93 -0.42 -0.59 16 11 C -0.09 -1.91 4.44 -26.65 -0.12 -2.03 16 12 C -0.05 -0.95 2.43 -91.65 -0.22 -1.17 16 13 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 14 C -0.06 -1.00 4.79 -104.61 -0.50 -1.50 16 15 C -0.10 -1.41 8.66 -39.60 -0.34 -1.75 16 16 C -0.14 -1.91 9.99 -39.43 -0.39 -2.30 16 17 C 0.08 1.10 6.70 -39.22 -0.26 0.83 16 18 O -0.50 -5.69 13.50 -19.43 -0.26 -5.95 16 19 C -0.14 -1.86 9.99 -39.44 -0.39 -2.26 16 20 C -0.11 -1.48 9.66 -39.61 -0.38 -1.87 16 21 C -0.10 -1.74 5.23 -26.65 -0.14 -1.88 16 22 C 0.06 1.10 6.55 -3.83 -0.03 1.07 16 23 N -0.68 -16.34 6.49 -108.00 -0.70 -17.04 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.06 1.25 7.29 -51.93 -0.38 0.88 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.13 1.90 7.05 -52.49 -0.37 1.53 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.38 2.48 9.06 45.56 0.41 2.89 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.53 7.94 -52.48 -0.42 1.12 16 32 H 0.07 1.14 7.33 -51.93 -0.38 0.76 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.36 9.46 6.65 -39.29 -0.26 9.20 16 LS Contribution 293.33 15.07 4.42 4.42 Total: -1.00 -29.21 293.33 -8.58 -37.79 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.30 Total: 9.24 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -3.34 Total: -19.98 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.06 Total: -41.57 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.26 Total: -5.95 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.21 -8.58 -37.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.626 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds