Wall clock time and date at job start Mon Mar 30 2020 06:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99799 * 3 2 1 5 5 H 1.48503 * 109.47071 * 29.99604 * 3 2 1 6 6 H 1.48495 * 109.47016 * 149.99870 * 3 2 1 7 7 C 1.37876 * 120.00369 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99831 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46283 * 60.01967 * 9 7 2 11 11 C 1.53038 * 109.46226 * 179.97438 * 9 7 2 12 12 C 1.53127 * 109.27941 * 179.19621 * 11 9 7 13 13 H 1.09004 * 109.51868 * 62.24855 * 12 11 9 14 14 C 1.50697 * 109.57623 * 182.41059 * 12 11 9 15 15 C 1.38262 * 119.94116 * 59.43947 * 14 12 11 16 16 C 1.38152 * 120.05207 * 179.72468 * 15 14 12 17 17 C 1.38731 * 119.94107 * 0.55169 * 16 15 14 18 18 O 1.35902 * 120.05143 * 179.74501 * 17 16 15 19 19 C 1.38726 * 119.89100 * 359.72370 * 17 16 15 20 20 C 1.38142 * 119.94340 * 359.97438 * 19 17 16 21 21 C 1.53117 * 109.15989 * 302.34585 * 12 11 9 22 22 C 1.53044 * 109.27792 * 57.65607 * 21 12 11 23 23 N 1.46830 * 109.46943 * 300.04724 * 9 7 2 24 24 H 0.96998 * 120.00511 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.50308 * 59.25834 * 11 9 7 26 26 H 1.08996 * 109.53785 * 299.15667 * 11 9 7 27 27 H 1.08000 * 119.97964 * 0.02562 * 15 14 12 28 28 H 1.07998 * 120.02851 * 180.27465 * 16 15 14 29 29 H 0.96694 * 114.00516 * 269.97882 * 18 17 16 30 30 H 1.08001 * 120.02768 * 179.97438 * 19 17 16 31 31 H 1.08007 * 119.97162 * 180.02562 * 20 19 17 32 32 H 1.09001 * 109.50874 * 297.71787 * 21 12 11 33 33 H 1.09000 * 109.50461 * 177.59307 * 21 12 11 34 34 H 1.09002 * 109.46396 * 60.83566 * 22 21 12 35 35 H 1.08994 * 109.46485 * 180.81491 * 22 21 12 36 36 H 1.00904 * 110.98205 * 54.13905 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6252 -2.5571 -0.8899 11 6 2.2459 -3.6621 0.0005 12 6 1.4762 -4.9857 0.0208 13 1 0.8699 -5.0683 -0.8813 14 6 2.4493 -6.1348 0.0806 15 6 3.3333 -6.2361 1.1389 16 6 4.2225 -7.2917 1.1990 17 6 4.2357 -8.2442 0.1904 18 8 5.1130 -9.2807 0.2446 19 6 3.3516 -8.1371 -0.8732 20 6 2.4601 -7.0831 -0.9255 21 6 0.5677 -5.0199 1.2529 22 6 -0.3784 -3.8175 1.2165 23 7 0.4057 -2.5761 1.1985 24 1 -0.4851 0.8400 -0.0004 25 1 2.8815 -3.5973 0.8836 26 1 2.8631 -3.6138 -0.8965 27 1 3.3254 -5.4922 1.9218 28 1 4.9098 -7.3729 2.0281 29 1 5.9606 -9.1015 -0.1849 30 1 3.3602 -8.8772 -1.6598 31 1 1.7713 -6.9995 -1.7532 32 1 1.1769 -4.9763 2.1557 33 1 -0.0146 -5.9413 1.2502 34 1 -0.9970 -3.8690 0.3205 35 1 -1.0169 -3.8309 2.0998 36 1 -0.1942 -1.7679 1.2699 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:57 Heat of formation + Delta-G solvation = -53.719304 kcal Electronic energy + Delta-G solvation = -17700.006372 eV Core-core repulsion = 14954.278397 eV Total energy + Delta-G solvation = -2745.727974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93225 -39.32943 -37.47268 -34.93812 -33.18802 -31.90615 -31.64973 -29.36585 -27.12700 -24.65385 -23.76248 -23.13811 -22.02481 -20.19672 -19.28806 -18.60533 -17.08716 -16.73758 -16.53766 -16.15954 -15.93413 -15.30237 -14.96468 -14.50299 -14.47252 -14.30090 -14.06780 -13.69760 -13.15130 -12.92663 -12.83734 -12.78355 -12.56160 -12.33343 -12.04156 -11.73180 -11.58570 -11.26735 -10.99797 -10.85297 -10.64556 -9.89108 -9.32679 -8.77606 -8.16487 -6.27973 0.32362 0.44823 1.42285 1.43958 1.54431 2.43008 2.72337 3.09601 3.36462 3.76361 3.87735 4.04264 4.11040 4.18099 4.30473 4.48741 4.50559 4.59814 4.66066 4.76102 4.89459 5.00527 5.03641 5.08464 5.13122 5.18216 5.29096 5.35176 5.45717 5.49599 5.57416 5.79451 5.83621 5.94506 6.20223 6.66243 6.89953 7.01067 7.14885 7.44143 8.91945 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034715 B = 0.005149 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.383527 B = 5436.327137 C = 5866.436777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.020 3.980 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.215 3.785 10 H -0.044 1.044 11 C -0.081 4.081 12 C -0.045 4.045 13 H 0.063 0.937 14 C -0.083 4.083 15 C -0.104 4.104 16 C -0.148 4.148 17 C 0.090 3.910 18 O -0.509 6.509 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.093 4.093 22 C 0.052 3.948 23 N -0.692 5.692 24 H 0.265 0.735 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.408 0.592 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.002 0.998 35 H 0.070 0.930 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.174 -14.512 -0.043 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.179 4.179 3 Si 0.787 3.213 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.107 3.893 10 H -0.027 1.027 11 C -0.119 4.119 12 C -0.063 4.063 13 H 0.082 0.918 14 C -0.083 4.083 15 C -0.122 4.122 16 C -0.166 4.166 17 C 0.046 3.954 18 O -0.322 6.322 19 C -0.164 4.164 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.078 4.078 23 N -0.327 5.327 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.267 0.733 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.020 0.980 35 H 0.088 0.912 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.084 -14.931 0.654 16.136 hybrid contribution -0.185 1.615 -1.042 1.931 sum 5.898 -13.316 -0.388 14.569 Atomic orbital electron populations 1.69784 1.07208 1.27757 1.51880 1.25764 0.95736 1.02536 0.93893 0.85504 0.78664 0.79014 0.78081 1.20231 1.20761 1.19426 1.21533 0.93204 0.91755 1.50289 0.92667 1.18921 0.90675 0.93144 0.86553 1.02680 1.21505 0.97455 0.92850 1.00105 1.20182 0.95015 0.92325 0.98811 0.91812 1.19961 0.97029 0.95963 0.95318 1.21011 0.95078 0.97832 0.98244 1.21554 1.00847 0.93987 1.00229 1.18532 0.93884 0.88420 0.94543 1.84757 1.29325 1.36915 1.81161 1.21557 0.97194 0.98951 0.98714 1.21146 0.99180 0.93823 0.98541 1.21544 0.97217 0.96837 0.97440 1.21947 0.95016 0.92150 0.98692 1.60758 1.26178 1.04102 1.41650 0.92565 0.92696 0.93681 0.85809 0.84183 0.73295 0.83717 0.84715 0.91525 0.90584 0.97981 0.91153 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.69 11.48 21.45 0.25 -52.44 16 2 C 0.02 1.08 5.32 84.65 0.45 1.53 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.53 -29.52 8.76 25.60 0.22 -29.30 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.22 11.06 2.39 44.19 0.11 11.16 16 10 H -0.04 -2.55 8.14 -2.38 -0.02 -2.57 16 11 C -0.08 -3.43 4.44 30.65 0.14 -3.29 16 12 C -0.04 -1.55 2.43 -11.46 -0.03 -1.58 16 13 H 0.06 2.24 7.88 -2.38 -0.02 2.23 16 14 C -0.08 -2.45 4.79 -19.85 -0.10 -2.54 16 15 C -0.10 -2.91 8.66 22.25 0.19 -2.72 16 16 C -0.15 -3.60 9.99 22.37 0.22 -3.38 16 17 C 0.09 2.09 6.70 22.50 0.15 2.24 16 18 O -0.51 -9.75 13.50 -92.45 -1.25 -11.00 16 19 C -0.15 -3.32 9.99 22.36 0.22 -3.10 16 20 C -0.11 -2.80 9.66 22.25 0.22 -2.59 16 21 C -0.09 -3.12 5.23 30.65 0.16 -2.96 16 22 C 0.05 2.07 6.55 86.33 0.57 2.63 16 23 N -0.69 -33.80 6.49 -495.60 -3.22 -37.01 16 24 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.05 2.34 7.29 -2.39 -0.02 2.32 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.12 3.55 7.05 -2.91 -0.02 3.53 16 28 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.41 3.79 9.06 -74.06 -0.67 3.12 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.13 3.08 7.94 -2.91 -0.02 3.06 16 32 H 0.07 2.24 7.33 -2.39 -0.02 2.22 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.35 18.65 6.65 -89.69 -0.60 18.05 16 Total: -1.00 -62.88 293.33 0.15 -62.72 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.18 Total: 26.01 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 2.53 Total: -33.89 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.97 Total: -89.46 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -1.25 Total: -11.00 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.88 0.15 -62.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.006 kcal (2) G-P(sol) polarization free energy of solvation -62.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds