Wall clock time and date at job start Mon Mar 30 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00212 * 2 1 4 4 H 1.48503 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46824 * 299.99164 * 3 2 1 6 6 H 1.48496 * 109.47274 * 59.99624 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99776 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46247 * 299.99655 * 9 7 2 11 11 C 1.53035 * 109.45224 * 180.02562 * 9 7 2 12 12 C 1.53117 * 109.28067 * 180.80957 * 11 9 7 13 13 H 1.09004 * 109.57633 * 297.71808 * 12 11 9 14 14 C 1.50700 * 109.52735 * 177.55973 * 12 11 9 15 15 C 1.38267 * 119.93925 * 300.04456 * 14 12 11 16 16 C 1.38150 * 120.04822 * 179.72058 * 15 14 12 17 17 C 1.38727 * 119.94728 * 0.55161 * 16 15 14 18 18 O 1.35900 * 120.05792 * 179.74725 * 17 16 15 19 19 C 1.38731 * 119.88684 * 359.72106 * 17 16 15 20 20 C 1.38140 * 119.94807 * 0.02562 * 19 17 16 21 21 C 1.53117 * 109.15945 * 57.65280 * 12 11 9 22 22 C 1.53033 * 109.28196 * 302.34618 * 21 12 11 23 23 N 1.46845 * 109.46474 * 59.97712 * 9 7 2 24 24 H 0.97007 * 119.99583 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.50627 * 300.74706 * 11 9 7 26 26 H 1.09001 * 109.50255 * 60.86667 * 11 9 7 27 27 H 1.08000 * 119.97458 * 359.97438 * 15 14 12 28 28 H 1.07999 * 120.02639 * 180.27125 * 16 15 14 29 29 H 0.96704 * 113.99929 * 269.97603 * 18 17 16 30 30 H 1.08004 * 120.02988 * 179.97438 * 19 17 16 31 31 H 1.08000 * 119.97700 * 180.02562 * 20 19 17 32 32 H 1.09008 * 109.50509 * 182.40627 * 21 12 11 33 33 H 1.08999 * 109.53899 * 62.30974 * 21 12 11 34 34 H 1.09007 * 109.46547 * 299.16541 * 22 21 12 35 35 H 1.09000 * 109.46103 * 179.19001 * 22 21 12 36 36 H 1.00895 * 111.00154 * 57.64729 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6240 -2.5565 0.8904 11 6 2.2457 -3.6621 0.0018 12 6 1.4762 -4.9857 -0.0186 13 1 0.8692 -5.0692 0.8830 14 6 2.4504 -6.1339 -0.0779 15 6 3.3277 -6.2403 -1.1413 16 6 4.2257 -7.2888 -1.1950 17 6 4.2389 -8.2416 -0.1868 18 8 5.1178 -9.2767 -0.2400 19 6 3.3538 -8.1356 0.8762 20 6 2.4614 -7.0824 0.9281 21 6 0.5687 -5.0204 -1.2514 22 6 -0.3775 -3.8182 -1.2164 23 7 0.4068 -2.5768 -1.1985 24 1 -0.4850 0.8401 -0.0004 25 1 2.8821 -3.5976 -0.8808 26 1 2.8617 -3.6130 0.8998 27 1 3.3137 -5.5009 -1.9284 28 1 4.9137 -7.3691 -2.0236 29 1 4.7796 -10.0566 -0.7010 30 1 3.3619 -8.8763 1.6622 31 1 1.7724 -6.9992 1.7556 32 1 -0.0136 -5.9419 -1.2489 33 1 1.1782 -4.9776 -2.1540 34 1 -0.9969 -3.8693 -0.3208 35 1 -1.0153 -3.8321 -2.1002 36 1 0.9606 -2.4869 -2.0371 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259905877.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:00 Heat of formation + Delta-G solvation = -29.719184 kcal Electronic energy + Delta-G solvation = -17706.340279 eV Core-core repulsion = 14961.653028 eV Total energy + Delta-G solvation = -2744.687251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89534 -38.11424 -36.35045 -32.88954 -31.65283 -30.93442 -29.86157 -27.99751 -25.05671 -23.23486 -22.73419 -21.54013 -20.62475 -19.21131 -18.41036 -16.63173 -15.80373 -15.54129 -15.07497 -14.50348 -14.04300 -13.90716 -13.63063 -13.32804 -13.25774 -12.85638 -12.52856 -12.04143 -12.01265 -11.66744 -11.09571 -10.94473 -10.82270 -10.60384 -10.49856 -10.43511 -10.22048 -9.71239 -9.60309 -8.92139 -8.88258 -8.37772 -8.25372 -6.75809 -5.84082 -3.98351 1.31734 1.42360 3.34715 3.43245 3.46578 3.69864 4.20813 4.50683 4.89018 5.00651 5.04219 5.31856 5.39241 5.49919 5.61009 5.62688 5.73583 5.90301 5.99819 6.06097 6.14308 6.21152 6.36062 6.44818 6.46489 6.50306 6.59643 6.74422 6.87462 6.90178 6.95713 7.01601 7.57243 7.60435 7.94891 8.27475 8.66482 8.97342 9.18081 9.70545 11.20099 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.034994 B = 0.005142 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.946286 B = 5443.576306 C = 5858.801000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.222 3.778 10 H 0.036 0.964 11 C -0.133 4.133 12 C -0.052 4.052 13 H 0.072 0.928 14 C -0.066 4.066 15 C -0.098 4.098 16 C -0.143 4.143 17 C 0.084 3.916 18 O -0.502 6.502 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.144 4.144 22 C 0.057 3.943 23 N -0.648 5.648 24 H 0.254 0.746 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.384 0.616 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.474 -15.608 -2.021 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.124 4.124 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.576 4.576 8 H 0.072 0.928 9 C 0.115 3.885 10 H 0.054 0.946 11 C -0.172 4.172 12 C -0.071 4.071 13 H 0.090 0.910 14 C -0.066 4.066 15 C -0.116 4.116 16 C -0.162 4.162 17 C 0.040 3.960 18 O -0.311 6.311 19 C -0.163 4.163 20 C -0.124 4.124 21 C -0.184 4.184 22 C -0.074 4.074 23 N -0.275 5.275 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.239 0.761 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.142 -14.710 -1.424 15.109 hybrid contribution 0.964 -0.200 -0.467 1.090 sum 4.106 -14.910 -1.891 15.581 Atomic orbital electron populations 1.70120 1.05656 1.25468 1.47035 1.24961 0.94598 0.98536 0.94257 0.86753 0.80309 0.84630 0.77471 1.19952 1.21097 1.21172 1.21015 0.92329 0.90293 1.53919 0.92841 1.19104 0.88676 0.90817 0.89939 0.94569 1.22444 0.99592 0.94280 1.00921 1.20352 0.94720 0.93014 0.98968 0.90963 1.20224 0.96700 0.95847 0.93792 1.20951 0.94757 0.97397 0.98458 1.21377 0.99826 0.96135 0.98813 1.18425 0.91814 0.90622 0.95092 1.84836 1.41046 1.25217 1.80039 1.21346 0.95946 0.99979 0.98982 1.21005 0.98731 0.93969 0.98743 1.22394 0.98775 1.00284 0.96974 1.22002 0.96061 0.88624 1.00707 1.60941 1.30501 1.30834 1.05258 0.93583 0.93167 0.92848 0.85598 0.85817 0.76079 0.85857 0.85753 0.93138 0.92636 0.92185 0.92769 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 12.77 55.43 0.71 -23.78 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.54 -14.56 8.70 -34.44 -0.30 -14.86 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.22 5.38 2.29 -68.88 -0.16 5.22 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.13 -2.67 4.43 -26.65 -0.12 -2.79 16 12 C -0.05 -0.87 2.43 -91.65 -0.22 -1.10 16 13 H 0.07 1.23 7.88 -51.93 -0.41 0.82 16 14 C -0.07 -0.99 4.79 -104.60 -0.50 -1.49 16 15 C -0.10 -1.40 8.66 -39.60 -0.34 -1.75 16 16 C -0.14 -1.88 9.99 -39.43 -0.39 -2.27 16 17 C 0.08 1.09 6.70 -39.22 -0.26 0.83 16 18 O -0.50 -5.61 13.50 -19.43 -0.26 -5.87 16 19 C -0.14 -1.83 9.99 -39.44 -0.39 -2.22 16 20 C -0.11 -1.46 9.66 -39.61 -0.38 -1.84 16 21 C -0.14 -2.32 5.21 -26.65 -0.14 -2.46 16 22 C 0.06 1.07 6.55 -3.83 -0.03 1.04 16 23 N -0.65 -14.81 5.81 -107.99 -0.63 -15.44 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.05 1.00 7.31 -51.93 -0.38 0.62 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.13 1.77 7.05 -52.49 -0.37 1.40 16 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.38 2.32 9.06 45.56 0.41 2.73 16 30 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.12 1.52 7.94 -52.49 -0.42 1.10 16 32 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.05 0.87 7.30 -51.93 -0.38 0.49 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.32 7.15 8.79 -39.29 -0.35 6.81 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -30.12 295.93 -8.47 -38.59 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.39 Total: 7.38 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -3.34 Total: -21.50 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.08 Total: -39.22 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.26 Total: -5.87 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.12 -8.47 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905877.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.868 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds