Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99922 * 2 1 4 4 C 1.40025 * 120.18517 * 84.62509 * 3 2 1 5 5 N 1.36067 * 133.79223 * 0.02562 * 4 3 2 6 6 C 1.29873 * 108.78992 * 179.97438 * 5 4 3 7 7 O 1.34284 * 110.25956 * 359.97438 * 6 5 4 8 8 C 1.35107 * 108.15494 * 0.02562 * 7 6 5 9 9 C 1.38769 * 133.90255 * 180.28456 * 8 7 6 10 10 C 1.37913 * 119.97801 * 180.14225 * 9 8 7 11 11 C 1.38191 * 120.18786 * 264.60054 * 3 2 1 12 12 C 1.50700 * 119.81921 * 0.02562 * 11 3 2 13 13 C 1.53004 * 109.47363 * 274.59249 * 12 11 3 14 14 C 1.50698 * 109.47089 * 184.94095 * 13 12 11 15 15 H 1.07994 * 120.00167 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00399 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99915 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47094 * 89.99591 * 18 16 14 20 20 H 1.48498 * 109.47035 * 209.99554 * 18 16 14 21 21 H 1.48504 * 109.47292 * 329.99767 * 18 16 14 22 22 H 1.09002 * 109.46798 * 174.96717 * 1 2 3 23 23 H 1.09000 * 109.46951 * 294.96704 * 1 2 3 24 24 H 1.08999 * 109.47269 * 54.96642 * 1 2 3 25 25 H 1.08002 * 124.87143 * 180.02562 * 6 5 4 26 26 H 1.07998 * 120.00972 * 359.97438 * 9 8 7 27 27 H 1.08005 * 119.73354 * 179.75743 * 10 9 8 28 28 H 1.08997 * 109.47200 * 34.59316 * 12 11 3 29 29 H 1.09003 * 109.46798 * 154.59261 * 12 11 3 30 30 H 1.09003 * 109.47000 * 304.94214 * 13 12 11 31 31 H 1.08994 * 109.47115 * 64.93917 * 13 12 11 32 32 H 0.96993 * 120.00104 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.2645 1.8896 1.2051 5 7 1.9853 1.6104 2.5072 6 6 2.4077 2.5919 3.2454 7 8 2.9720 3.5400 2.4799 8 6 2.9024 3.1379 1.1920 9 6 3.3162 3.6898 -0.0121 10 6 3.0908 3.0145 -1.1933 11 6 2.4615 1.7790 -1.1892 12 6 2.2284 1.0522 -2.4887 13 6 3.3745 0.0692 -2.7360 14 6 3.2054 -0.5689 -4.0907 15 1 2.3649 -0.2999 -4.7132 16 6 4.1244 -1.4953 -4.5359 17 7 3.9767 -2.0526 -5.7179 18 14 5.5787 -1.9600 -3.4595 19 1 5.2082 -3.1104 -2.5966 20 1 6.7301 -2.3362 -4.3185 21 1 5.9538 -0.8029 -2.6076 22 1 -0.3633 -1.0237 -0.0902 23 1 -0.3633 0.4338 0.9316 24 1 -0.3634 0.5899 -0.8415 25 1 2.3188 2.6385 4.3207 26 1 3.8123 4.6490 -0.0245 27 1 3.4111 3.4495 -2.1286 28 1 1.2866 0.5063 -2.4357 29 1 2.1853 1.7730 -3.3053 30 1 4.3245 0.6027 -2.7016 31 1 3.3634 -0.7028 -1.9668 32 1 4.6230 -2.7046 -6.0309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259933831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = -4.430704 kcal Electronic energy + Delta-G solvation = -17497.529208 eV Core-core repulsion = 14618.105453 eV Total energy + Delta-G solvation = -2879.423755 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.20882 -39.36118 -36.78352 -34.73732 -33.79687 -31.90426 -29.59712 -29.15310 -26.78612 -25.34100 -23.50975 -22.36382 -21.56336 -20.33341 -18.11546 -17.92891 -16.84577 -16.68373 -16.06272 -15.30856 -15.19106 -15.10208 -14.19630 -13.79194 -13.32583 -12.95121 -12.70803 -12.36559 -12.15377 -12.00487 -11.60401 -11.45803 -11.12823 -10.93660 -10.55616 -10.15236 -10.02003 -9.77205 -9.67454 -9.16571 -8.51125 -8.46885 -8.14873 -6.01856 -3.99644 0.66606 1.26826 2.44606 2.57458 3.36046 3.42490 3.45665 3.48223 3.88647 3.98585 4.49483 4.73832 4.92442 5.13190 5.18669 5.33193 5.37753 5.47528 5.50492 5.73249 5.79162 5.93533 6.03850 6.16657 6.32385 6.40646 6.55804 6.66230 6.86268 7.32406 7.42422 7.47394 7.76133 7.81837 8.54837 9.02211 9.61206 11.11426 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.006177 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.003874 B = 4532.079694 C = 4723.225698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.317 6.317 3 C 0.151 3.849 4 C -0.005 4.005 5 N -0.472 5.472 6 C 0.213 3.787 7 O -0.220 6.220 8 C 0.011 3.989 9 C -0.105 4.105 10 C -0.071 4.071 11 C -0.083 4.083 12 C -0.062 4.062 13 C -0.005 4.005 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.904 5.904 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.095 0.905 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.253 0.747 26 H 0.136 0.864 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.019 0.981 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 11.806 15.556 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.233 6.233 3 C 0.106 3.894 4 C -0.116 4.116 5 N -0.200 5.200 6 C -0.018 4.018 7 O -0.112 6.112 8 C -0.039 4.039 9 C -0.123 4.123 10 C -0.089 4.089 11 C -0.085 4.085 12 C -0.099 4.099 13 C -0.042 4.042 14 C -0.556 4.556 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.543 5.543 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.113 0.887 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.268 0.732 26 H 0.154 0.846 27 H 0.166 0.834 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.481 10.946 15.628 19.600 hybrid contribution 1.013 0.340 0.566 1.209 sum -3.468 11.286 16.194 20.041 Atomic orbital electron populations 1.22954 0.78798 1.03396 1.00210 1.86077 1.19768 1.23576 1.93864 1.17664 0.97479 0.85943 0.88311 1.20156 1.04557 0.94845 0.92083 1.70579 1.21843 1.26350 1.01245 1.28194 0.92468 0.82019 0.99129 1.84505 1.66026 1.44785 1.15868 1.20137 1.03951 0.95655 0.84170 1.19865 1.03538 1.01606 0.87333 1.20978 0.96753 0.93702 0.97508 1.20601 0.97891 0.94115 0.95857 1.20550 1.01353 0.98021 0.89959 1.19549 0.93042 0.94040 0.97603 1.21102 1.11190 1.23002 1.00354 0.90931 1.24976 0.97781 0.95657 0.94832 1.69907 1.36761 1.28966 1.18689 0.86820 0.82579 0.79476 0.80726 1.20193 1.21421 1.18994 0.88654 0.93863 0.93427 0.73152 0.84622 0.83396 0.91336 0.91108 0.96595 0.96267 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.86 101.05 1.10 1.68 16 2 O -0.32 -5.99 9.59 -19.42 -0.19 -6.17 16 3 C 0.15 2.77 5.73 -38.93 -0.22 2.54 16 4 C 0.00 -0.08 7.18 -84.59 -0.61 -0.69 16 5 N -0.47 -7.28 11.34 -12.46 -0.14 -7.43 16 6 C 0.21 2.36 13.13 51.93 0.68 3.04 16 7 O -0.22 -2.84 10.77 3.50 0.04 -2.80 16 8 C 0.01 0.16 7.43 -38.65 -0.29 -0.13 16 9 C -0.10 -1.40 10.06 -39.50 -0.40 -1.80 16 10 C -0.07 -1.04 9.65 -39.55 -0.38 -1.42 16 11 C -0.08 -1.46 5.14 -104.49 -0.54 -2.00 16 12 C -0.06 -1.22 5.00 -27.88 -0.14 -1.36 16 13 C 0.00 -0.12 4.02 -27.88 -0.11 -0.23 16 14 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 18 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 19 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 22 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.64 7.80 -51.93 -0.41 0.23 16 25 H 0.25 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 27 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 28 H 0.07 1.36 7.07 -51.93 -0.37 0.99 16 29 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 281.65 15.07 4.24 4.24 Total: -1.00 -34.66 281.65 -4.93 -39.60 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -3.66 Total: -4.29 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.34 Total: -13.58 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.63 Total: -34.71 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.15 Total: -8.98 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.66 -4.93 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.168 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds