Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 116.99922 * 2 1 4 4 C 1.40025 * 120.18517 * 84.62509 * 3 2 1 5 5 N 1.36067 * 133.79223 * 0.02562 * 4 3 2 6 6 C 1.29873 * 108.78992 * 179.97438 * 5 4 3 7 7 O 1.34284 * 110.25956 * 359.97438 * 6 5 4 8 8 C 1.35107 * 108.15494 * 0.02562 * 7 6 5 9 9 C 1.38769 * 133.90255 * 180.28456 * 8 7 6 10 10 C 1.37913 * 119.97801 * 180.14225 * 9 8 7 11 11 C 1.38191 * 120.18786 * 264.60054 * 3 2 1 12 12 C 1.50700 * 119.81921 * 0.02562 * 11 3 2 13 13 C 1.53004 * 109.47363 * 274.59249 * 12 11 3 14 14 C 1.50698 * 109.47089 * 184.94095 * 13 12 11 15 15 H 1.07994 * 120.00167 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99939 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00399 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99915 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47094 * 89.99591 * 18 16 14 20 20 H 1.48498 * 109.47035 * 209.99554 * 18 16 14 21 21 H 1.48504 * 109.47292 * 329.99767 * 18 16 14 22 22 H 1.09002 * 109.46798 * 174.96717 * 1 2 3 23 23 H 1.09000 * 109.46951 * 294.96704 * 1 2 3 24 24 H 1.08999 * 109.47269 * 54.96642 * 1 2 3 25 25 H 1.08002 * 124.87143 * 180.02562 * 6 5 4 26 26 H 1.07998 * 120.00972 * 359.97438 * 9 8 7 27 27 H 1.08005 * 119.73354 * 179.75743 * 10 9 8 28 28 H 1.08997 * 109.47200 * 34.59316 * 12 11 3 29 29 H 1.09003 * 109.46798 * 154.59261 * 12 11 3 30 30 H 1.09003 * 109.47000 * 304.94214 * 13 12 11 31 31 H 1.08994 * 109.47115 * 64.93917 * 13 12 11 32 32 H 0.96993 * 120.00104 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.2645 1.8896 1.2051 5 7 1.9853 1.6104 2.5072 6 6 2.4077 2.5919 3.2454 7 8 2.9720 3.5400 2.4799 8 6 2.9024 3.1379 1.1920 9 6 3.3162 3.6898 -0.0121 10 6 3.0908 3.0145 -1.1933 11 6 2.4615 1.7790 -1.1892 12 6 2.2284 1.0522 -2.4887 13 6 3.3745 0.0692 -2.7360 14 6 3.2054 -0.5689 -4.0907 15 1 2.3649 -0.2999 -4.7132 16 6 4.1244 -1.4953 -4.5359 17 7 3.9767 -2.0526 -5.7179 18 14 5.5787 -1.9600 -3.4595 19 1 5.2082 -3.1104 -2.5966 20 1 6.7301 -2.3362 -4.3185 21 1 5.9538 -0.8029 -2.6076 22 1 -0.3633 -1.0237 -0.0902 23 1 -0.3633 0.4338 0.9316 24 1 -0.3634 0.5899 -0.8415 25 1 2.3188 2.6385 4.3207 26 1 3.8123 4.6490 -0.0245 27 1 3.4111 3.4495 -2.1286 28 1 1.2866 0.5063 -2.4357 29 1 2.1853 1.7730 -3.3053 30 1 4.3245 0.6027 -2.7016 31 1 3.3634 -0.7028 -1.9668 32 1 4.6230 -2.7046 -6.0309 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259933831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = -30.043802 kcal Electronic energy + Delta-G solvation = -17498.639875 eV Core-core repulsion = 14618.105453 eV Total energy + Delta-G solvation = -2880.534422 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.24146 -40.59234 -38.00114 -35.96659 -35.49462 -33.79738 -30.82022 -30.61286 -28.04966 -26.95157 -24.56630 -23.84881 -22.67088 -22.05108 -19.30958 -19.09369 -18.82126 -17.75410 -17.33550 -16.49911 -16.43658 -16.23211 -16.13349 -15.00775 -14.86586 -14.51795 -14.47006 -13.73073 -13.56909 -13.37655 -12.98207 -12.89184 -12.60536 -12.40236 -11.90718 -11.84866 -11.73613 -11.54674 -11.34909 -11.03666 -10.76234 -9.65199 -9.34503 -8.29609 -6.32138 -0.38707 0.08058 1.33778 1.34923 1.45795 1.46880 1.61188 2.30755 2.35051 2.77498 3.00199 3.06267 3.65313 3.83296 4.05471 4.10926 4.26358 4.35452 4.39995 4.49550 4.64292 4.66515 4.74409 4.87888 5.05272 5.08356 5.26269 5.28847 5.41988 5.50863 5.64467 5.66292 6.27947 6.32731 6.64020 6.74737 7.32298 8.86893 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.006177 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.003874 B = 4532.079694 C = 4723.225698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.348 6.348 3 C 0.125 3.875 4 C -0.026 4.026 5 N -0.519 5.519 6 C 0.246 3.754 7 O -0.216 6.216 8 C 0.002 3.998 9 C -0.088 4.088 10 C -0.075 4.075 11 C -0.100 4.100 12 C -0.051 4.051 13 C 0.002 3.998 14 C -0.525 4.525 15 H 0.041 0.959 16 C 0.011 3.989 17 N -0.948 5.948 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.252 1.252 22 H 0.108 0.892 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.311 0.689 26 H 0.175 0.825 27 H 0.171 0.829 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.020 0.980 31 H 0.005 0.995 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 13.724 18.034 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.265 6.265 3 C 0.080 3.920 4 C -0.137 4.137 5 N -0.248 5.248 6 C 0.016 3.984 7 O -0.108 6.108 8 C -0.048 4.048 9 C -0.106 4.106 10 C -0.093 4.093 11 C -0.102 4.102 12 C -0.088 4.088 13 C -0.035 4.035 14 C -0.563 4.563 15 H 0.059 0.941 16 C -0.186 4.186 17 N -0.589 5.589 18 Si 0.764 3.236 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.175 1.175 22 H 0.126 0.874 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.326 0.674 26 H 0.192 0.808 27 H 0.189 0.811 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.381 12.876 18.111 22.477 hybrid contribution 0.572 -0.202 -0.100 0.615 sum -2.809 12.674 18.010 22.201 Atomic orbital electron populations 1.23093 0.77318 1.04402 1.00704 1.86007 1.21575 1.24783 1.94119 1.17897 0.98597 0.86157 0.89316 1.20294 1.05212 0.95720 0.92462 1.70571 1.24521 1.28645 1.01055 1.29525 0.88427 0.79775 1.00665 1.84546 1.66058 1.45078 1.15092 1.20419 1.03826 0.95156 0.85422 1.20242 1.01831 1.02417 0.86113 1.21217 0.96323 0.92603 0.99178 1.20426 0.99938 0.95527 0.94281 1.20276 0.99060 0.97401 0.92079 1.19408 0.95115 0.94517 0.94472 1.21435 1.09998 1.23073 1.01820 0.94083 1.25849 1.00879 0.95741 0.96109 1.70038 1.38225 1.30012 1.20589 0.85809 0.79197 0.79498 0.79080 1.19986 1.20348 1.17539 0.87405 0.93176 0.93069 0.67429 0.80807 0.81119 0.92345 0.90201 0.96151 0.97665 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 10.86 113.37 1.23 2.36 16 2 O -0.35 -13.46 9.59 -92.39 -0.89 -14.34 16 3 C 0.13 4.58 5.73 22.69 0.13 4.71 16 4 C -0.03 -0.86 7.18 39.39 0.28 -0.58 16 5 N -0.52 -15.09 11.34 -308.14 -3.49 -18.58 16 6 C 0.25 4.52 13.13 130.53 1.71 6.23 16 7 O -0.22 -4.77 10.77 -10.40 -0.11 -4.88 16 8 C 0.00 0.06 7.43 22.87 0.17 0.23 16 9 C -0.09 -2.06 10.06 22.32 0.22 -1.83 16 10 C -0.08 -2.03 9.65 22.29 0.22 -1.81 16 11 C -0.10 -3.47 5.14 -19.78 -0.10 -3.57 16 12 C -0.05 -2.04 5.00 29.85 0.15 -1.89 16 13 C 0.00 0.11 4.02 29.85 0.12 0.23 16 14 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 15 H 0.04 2.59 7.99 -2.91 -0.02 2.56 16 16 C 0.01 0.67 5.47 84.65 0.46 1.14 16 17 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 18 Si 0.94 46.28 27.47 68.60 1.88 48.17 16 19 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.25 -11.73 6.54 99.48 0.65 -11.08 16 22 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.05 1.42 7.80 -2.39 -0.02 1.41 16 25 H 0.31 1.21 8.06 -2.91 -0.02 1.19 16 26 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.06 2.40 7.07 -2.39 -0.02 2.38 16 29 H 0.08 2.97 8.05 -2.39 -0.02 2.96 16 30 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 31 H 0.00 0.26 7.57 -2.39 -0.02 0.24 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.39 281.65 3.61 -73.78 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.07 Total: 0.98 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.84 Total: -25.32 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.19 Total: -78.38 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.00 Total: -19.22 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.17 kcal Total: -77.39 3.61 -73.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259933831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.735 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds