Wall clock time and date at job start Mon Mar 30 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34251 * 126.49139 * 2 1 4 4 N 1.36792 * 109.92640 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.06963 * 179.97438 * 4 3 2 6 6 C 1.37780 * 109.86019 * 359.97438 * 4 3 2 7 7 C 1.40619 * 107.15789 * 359.72620 * 6 4 3 8 8 C 1.39666 * 119.94038 * 179.65054 * 7 6 4 9 9 C 1.36639 * 119.80678 * 0.60380 * 8 7 6 10 10 C 1.50700 * 119.72708 * 179.72151 * 9 8 7 11 11 C 1.50699 * 109.46817 * 269.97489 * 10 9 8 12 12 H 1.08007 * 120.00262 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00167 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99972 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00262 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47126 * 90.00181 * 15 13 11 17 17 H 1.48504 * 109.46898 * 210.00384 * 15 13 11 18 18 H 1.48497 * 109.47215 * 330.00230 * 15 13 11 19 19 C 1.38791 * 120.54632 * 359.69527 * 9 8 7 20 20 C 1.37984 * 120.63694 * 0.02562 * 19 9 8 21 21 F 1.35101 * 120.13068 * 180.02562 * 20 19 9 22 22 H 1.09002 * 109.47152 * 90.02735 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02816 * 1 2 3 25 25 H 1.07998 * 125.03731 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47443 * 89.97600 * 5 4 3 27 27 H 1.09008 * 109.47078 * 209.97706 * 5 4 3 28 28 H 1.09006 * 109.47117 * 329.97251 * 5 4 3 29 29 H 1.08000 * 120.09561 * 180.29896 * 8 7 6 30 30 H 1.08999 * 109.47211 * 29.97187 * 10 9 8 31 31 H 1.08994 * 109.47286 * 149.97863 * 10 9 8 32 32 H 0.97002 * 120.00040 * 180.02562 * 14 13 11 33 33 H 1.08009 * 119.68378 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 0.0006 5 6 4.7652 1.5986 0.0002 6 6 3.6958 -0.6862 0.0015 7 6 2.3782 -1.1776 0.0080 8 6 2.1480 -2.5551 0.0030 9 6 3.2054 -3.4205 0.0043 10 6 2.9549 -4.9065 0.0053 11 6 2.8711 -5.4008 1.4264 12 1 2.9880 -4.7082 2.2469 13 6 2.6452 -6.7372 1.6794 14 7 2.5033 -7.5807 0.6803 15 14 2.5420 -7.3501 3.4410 16 1 1.1342 -7.2791 3.9081 17 1 3.0143 -8.7566 3.5041 18 1 3.3956 -6.5018 4.3110 19 6 4.5083 -2.9422 0.0043 20 6 4.7593 -1.5854 0.0034 21 9 6.0316 -1.1311 0.0028 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8903 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9633 2.1037 -0.0004 26 1 5.0496 1.8252 1.0277 27 1 5.6028 1.1257 -0.5128 28 1 4.4980 2.5214 -0.5148 29 1 1.1371 -2.9352 0.0031 30 1 2.0170 -5.1172 -0.5085 31 1 3.7722 -5.4131 -0.5079 32 1 2.3440 -8.5209 0.8583 33 1 5.3338 -3.6388 0.0058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:21 Heat of formation + Delta-G solvation = 0.000172 kcal Electronic energy + Delta-G solvation = -17244.109178 eV Core-core repulsion = 14377.250349 eV Total energy + Delta-G solvation = -2866.858828 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.43090 -40.91500 -37.01904 -33.44142 -33.00788 -30.66591 -29.22291 -28.42627 -26.81902 -24.58938 -22.94314 -22.17373 -20.31624 -19.10058 -16.77161 -16.41874 -16.23459 -15.61529 -15.58537 -14.85806 -14.61816 -14.54979 -13.53503 -13.20125 -13.08559 -13.00986 -12.47133 -12.38857 -12.09979 -11.96998 -11.67133 -11.34371 -11.18064 -10.78705 -10.60297 -10.49143 -10.43775 -9.56992 -9.31563 -8.89494 -8.40021 -7.68191 -6.99462 -6.01488 -4.05433 1.47800 2.10657 2.87793 2.97597 3.32701 3.38845 3.43463 4.32530 4.51792 4.68064 4.77259 4.90654 5.07649 5.17781 5.33171 5.38901 5.45264 5.53762 5.73765 5.89247 6.02439 6.05745 6.11810 6.27964 6.36725 6.69655 6.89557 7.07841 7.14468 7.20936 7.50839 7.53602 7.70063 7.84883 7.94312 8.34273 8.99817 9.58381 11.07922 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.006119 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.603975 B = 4574.520443 C = 5153.504637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.175 4.175 3 C 0.042 3.958 4 N -0.488 5.488 5 C 0.081 3.919 6 C 0.047 3.953 7 C -0.076 4.076 8 C -0.087 4.087 9 C -0.037 4.037 10 C 0.052 3.948 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.120 4.120 20 C 0.070 3.930 21 F -0.154 7.154 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.163 0.837 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 17.120 -2.363 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.183 4.183 3 C -0.083 4.083 4 N -0.172 5.172 5 C -0.061 4.061 6 C -0.058 4.058 7 C -0.081 4.081 8 C -0.106 4.106 9 C -0.039 4.039 10 C 0.016 3.984 11 C -0.550 4.550 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.722 3.278 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.140 4.140 20 C 0.049 3.951 21 F -0.133 7.133 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.180 0.820 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.143 0.857 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.682 17.195 -2.402 17.375 hybrid contribution 0.361 -0.222 1.027 1.111 sum 1.044 16.973 -1.374 17.060 Atomic orbital electron populations 1.20062 0.89563 1.02080 1.01422 1.20231 0.95132 0.90738 1.12150 1.21444 0.81837 0.98790 1.06182 1.43533 1.05750 1.03646 1.64293 1.21918 0.88061 0.93376 1.02702 1.18048 0.94976 0.82829 1.09925 1.18984 0.90508 0.93420 1.05166 1.20240 0.99716 0.89609 1.01015 1.20011 0.90556 0.99052 0.94237 1.18320 0.98165 0.84165 0.97789 1.21086 1.49243 0.93100 0.91543 0.92418 1.24998 0.95259 0.96831 0.97176 1.69957 1.49227 1.03486 1.30678 0.86552 0.78385 0.77987 0.84890 1.20569 1.21190 1.19833 1.20887 0.98971 0.91438 1.02695 1.16681 0.76000 0.91424 1.11027 1.91381 1.37319 1.89667 1.94890 0.92116 0.92368 0.91524 0.81974 0.91722 0.90029 0.90347 0.85699 0.95003 0.95199 0.92856 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.41 36.01 0.37 -0.51 16 2 C -0.17 -2.65 6.32 -102.71 -0.65 -3.30 16 3 C 0.04 0.56 11.20 -16.74 -0.19 0.37 16 4 N -0.49 -7.21 3.18 -121.75 -0.39 -7.60 16 5 C 0.08 0.87 10.83 59.85 0.65 1.52 16 6 C 0.05 0.86 6.82 -83.91 -0.57 0.29 16 7 C -0.08 -1.42 6.35 -105.15 -0.67 -2.09 16 8 C -0.09 -1.77 9.67 -39.63 -0.38 -2.15 16 9 C -0.04 -0.83 5.03 -105.00 -0.53 -1.35 16 10 C 0.05 1.34 5.08 -29.04 -0.15 1.20 16 11 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.12 -2.47 9.64 -39.47 -0.38 -2.85 16 20 C 0.07 1.34 7.32 -39.29 -0.29 1.05 16 21 F -0.15 -2.73 15.83 2.25 0.04 -2.70 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.91 6.96 -51.92 -0.36 0.55 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 30 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 31 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.13 2.67 8.06 -52.48 -0.42 2.24 16 LS Contribution 290.43 15.07 4.38 4.38 Total: -1.00 -31.08 290.43 -7.57 -38.65 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.12 Total: -2.80 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -3.19 Total: -20.91 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.35 Total: -33.20 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.08 -7.57 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.655 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds