Wall clock time and date at job start Mon Mar 30 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34251 * 126.49139 * 2 1 4 4 N 1.36792 * 109.92640 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.06963 * 179.97438 * 4 3 2 6 6 C 1.37780 * 109.86019 * 359.97438 * 4 3 2 7 7 C 1.40619 * 107.15789 * 359.72620 * 6 4 3 8 8 C 1.39666 * 119.94038 * 179.65054 * 7 6 4 9 9 C 1.36639 * 119.80678 * 0.60380 * 8 7 6 10 10 C 1.50700 * 119.72708 * 179.72151 * 9 8 7 11 11 C 1.50699 * 109.46817 * 269.97489 * 10 9 8 12 12 H 1.08007 * 120.00262 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00167 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99972 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00262 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47126 * 90.00181 * 15 13 11 17 17 H 1.48504 * 109.46898 * 210.00384 * 15 13 11 18 18 H 1.48497 * 109.47215 * 330.00230 * 15 13 11 19 19 C 1.38791 * 120.54632 * 359.69527 * 9 8 7 20 20 C 1.37984 * 120.63694 * 0.02562 * 19 9 8 21 21 F 1.35101 * 120.13068 * 180.02562 * 20 19 9 22 22 H 1.09002 * 109.47152 * 90.02735 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02816 * 1 2 3 25 25 H 1.07998 * 125.03731 * 359.97438 * 3 2 1 26 26 H 1.08996 * 109.47443 * 89.97600 * 5 4 3 27 27 H 1.09008 * 109.47078 * 209.97706 * 5 4 3 28 28 H 1.09006 * 109.47117 * 329.97251 * 5 4 3 29 29 H 1.08000 * 120.09561 * 180.29896 * 8 7 6 30 30 H 1.08999 * 109.47211 * 29.97187 * 10 9 8 31 31 H 1.08994 * 109.47286 * 149.97863 * 10 9 8 32 32 H 0.97002 * 120.00040 * 180.02562 * 14 13 11 33 33 H 1.08009 * 119.68378 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0793 0.0000 4 7 3.6166 0.6893 0.0006 5 6 4.7652 1.5986 0.0002 6 6 3.6958 -0.6862 0.0015 7 6 2.3782 -1.1776 0.0080 8 6 2.1480 -2.5551 0.0030 9 6 3.2054 -3.4205 0.0043 10 6 2.9549 -4.9065 0.0053 11 6 2.8711 -5.4008 1.4264 12 1 2.9880 -4.7082 2.2469 13 6 2.6452 -6.7372 1.6794 14 7 2.5033 -7.5807 0.6803 15 14 2.5420 -7.3501 3.4410 16 1 1.1342 -7.2791 3.9081 17 1 3.0143 -8.7566 3.5041 18 1 3.3956 -6.5018 4.3110 19 6 4.5083 -2.9422 0.0043 20 6 4.7593 -1.5854 0.0034 21 9 6.0316 -1.1311 0.0028 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 0.8903 0.5134 24 1 -0.3633 -0.8898 0.5143 25 1 1.9633 2.1037 -0.0004 26 1 5.0496 1.8252 1.0277 27 1 5.6028 1.1257 -0.5128 28 1 4.4980 2.5214 -0.5148 29 1 1.1371 -2.9352 0.0031 30 1 2.0170 -5.1172 -0.5085 31 1 3.7722 -5.4131 -0.5079 32 1 2.3440 -8.5209 0.8583 33 1 5.3338 -3.6388 0.0058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936150.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:21 Heat of formation + Delta-G solvation = -16.236219 kcal Electronic energy + Delta-G solvation = -17244.813240 eV Core-core repulsion = 14377.250349 eV Total energy + Delta-G solvation = -2867.562891 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.90864 -42.18733 -38.54494 -35.15398 -34.46425 -32.37777 -30.60887 -29.63823 -28.43402 -25.98599 -24.61633 -23.61143 -21.88233 -20.36930 -18.49791 -17.99218 -17.81940 -17.02492 -16.94672 -16.53507 -16.17956 -15.82512 -15.02955 -14.48145 -14.37388 -14.13929 -14.05138 -13.79969 -13.49397 -13.13975 -13.11473 -12.94183 -12.71019 -12.51913 -12.41086 -12.08687 -12.03548 -11.51014 -11.28348 -10.59044 -10.26042 -9.12593 -8.38113 -8.13939 -6.31469 0.03286 0.57634 1.40672 1.41682 1.53163 1.69738 1.86207 2.40688 2.84018 3.11816 3.21921 3.67329 3.80916 3.96967 4.07441 4.41093 4.44047 4.47945 4.57263 4.67112 4.70482 4.86520 4.93484 5.02441 5.16652 5.22690 5.35568 5.38685 5.41584 5.73167 5.76764 5.83109 6.01065 6.15541 6.25439 6.43011 6.80306 7.36752 8.90793 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.026050 B = 0.006119 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.603975 B = 4574.520443 C = 5153.504637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.199 4.199 3 C 0.070 3.930 4 N -0.486 5.486 5 C 0.073 3.927 6 C 0.034 3.966 7 C -0.092 4.092 8 C -0.093 4.093 9 C -0.061 4.061 10 C 0.063 3.937 11 C -0.529 4.529 12 H 0.052 0.948 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.964 3.036 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.269 1.269 19 C -0.141 4.141 20 C 0.077 3.923 21 F -0.146 7.146 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.217 0.783 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.010 0.990 31 H 0.006 0.994 32 H 0.266 0.734 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 20.432 -1.405 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.206 4.206 3 C -0.055 4.055 4 N -0.169 5.169 5 C -0.068 4.068 6 C -0.073 4.073 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.063 4.063 10 C 0.026 3.974 11 C -0.567 4.567 12 H 0.070 0.930 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.788 3.212 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.193 1.193 19 C -0.161 4.161 20 C 0.055 3.945 21 F -0.124 7.124 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.234 0.766 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.268 20.537 -1.448 20.589 hybrid contribution 0.510 -1.067 0.675 1.362 sum 0.777 19.470 -0.773 19.501 Atomic orbital electron populations 1.20108 0.87598 1.02841 1.02280 1.20632 0.96700 0.89697 1.13583 1.22271 0.80515 1.00559 1.02184 1.43957 1.07714 1.02519 1.62692 1.22256 0.86577 0.93855 1.04077 1.18122 0.94307 0.84937 1.09890 1.19328 0.92119 0.93475 1.04804 1.20209 0.98933 0.90836 1.01229 1.19640 0.92011 0.97105 0.97517 1.18044 0.95992 0.86926 0.96434 1.21373 1.49353 0.93532 0.92413 0.92954 1.25886 0.94644 0.96923 1.01694 1.70075 1.49923 1.03906 1.32986 0.85467 0.78798 0.77521 0.79407 1.19501 1.20371 1.19320 1.20754 0.98183 0.92508 1.04621 1.16563 0.76665 0.91032 1.10244 1.91392 1.36854 1.89446 1.94753 0.91198 0.89325 0.93058 0.76639 0.90452 0.90912 0.86259 0.86095 0.97183 0.97566 0.92523 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.41 71.24 0.74 -0.78 16 2 C -0.20 -5.50 6.32 -18.62 -0.12 -5.62 16 3 C 0.07 1.51 11.20 83.01 0.93 2.44 16 4 N -0.49 -12.60 3.18 -539.12 -1.71 -14.31 16 5 C 0.07 1.24 10.83 127.77 1.38 2.62 16 6 C 0.03 1.20 6.82 39.04 0.27 1.46 16 7 C -0.09 -3.40 6.35 -20.20 -0.13 -3.52 16 8 C -0.09 -3.96 9.67 22.24 0.22 -3.75 16 9 C -0.06 -2.88 5.03 -20.11 -0.10 -2.99 16 10 C 0.06 3.47 5.08 29.10 0.15 3.61 16 11 C -0.53 -30.92 9.09 25.60 0.23 -30.68 16 12 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -56.49 13.29 21.45 0.28 -56.20 16 15 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 C -0.14 -6.10 9.64 22.34 0.22 -5.88 16 20 C 0.08 2.95 7.32 22.46 0.16 3.11 16 21 F -0.15 -5.10 15.83 44.97 0.71 -4.38 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.40 6.96 -2.38 -0.02 1.39 16 28 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 30 H 0.01 0.57 8.07 -2.39 -0.02 0.55 16 31 H 0.01 0.35 8.08 -2.39 -0.02 0.33 16 32 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 33 H 0.13 5.52 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -70.06 290.43 6.83 -63.23 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.11 Total: 3.78 kcal Atomic # 6 Polarization: -43.53 SS G_CDS: 4.41 Total: -39.12 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -1.43 Total: -70.52 kcal Atomic # 9 Polarization: -5.10 SS G_CDS: 0.71 Total: -4.38 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -70.06 6.83 -63.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936150.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.993 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds