Wall clock time and date at job start Mon Mar 30 2020 06:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46946 * 2 1 4 4 C 1.36892 * 125.06352 * 270.01466 * 3 2 1 5 5 C 1.50702 * 125.04054 * 359.97316 * 4 3 2 6 6 C 1.50700 * 109.46428 * 264.99543 * 5 4 3 7 7 H 1.07999 * 120.00844 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99883 * 179.97438 * 6 5 4 9 9 N 1.31525 * 119.99832 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00257 * 179.97438 * 8 6 5 11 11 H 1.48490 * 109.47081 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47163 * 120.00114 * 10 8 6 13 13 H 1.48507 * 109.47236 * 240.00071 * 10 8 6 14 14 C 1.34218 * 109.91880 * 179.97438 * 4 3 2 15 15 C 1.46505 * 106.98954 * 0.02562 * 14 4 3 16 16 C 1.37704 * 125.06684 * 89.97870 * 3 2 1 17 17 C 1.39126 * 133.40728 * 0.03715 * 16 3 2 18 18 C 1.37742 * 119.96763 * 180.02562 * 17 16 3 19 19 C 1.38795 * 120.69242 * 359.96840 * 18 17 16 20 20 C 1.37869 * 120.35380 * 0.30909 * 19 18 17 21 21 F 1.35094 * 120.19786 * 179.72138 * 20 19 18 22 22 H 1.09006 * 109.46627 * 299.99630 * 1 2 3 23 23 H 1.08992 * 109.47241 * 60.00096 * 1 2 3 24 24 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46869 * 240.00012 * 2 1 3 26 26 H 1.09001 * 109.46968 * 119.99999 * 2 1 3 27 27 H 1.08996 * 109.47178 * 24.98952 * 5 4 3 28 28 H 1.08997 * 109.47145 * 144.99598 * 5 4 3 29 29 H 0.96996 * 119.99975 * 179.97438 * 9 8 6 30 30 H 1.07995 * 126.50013 * 179.97438 * 14 4 3 31 31 H 1.08006 * 120.01262 * 0.02562 * 17 16 3 32 32 H 1.08005 * 119.65370 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.82117 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2802 2.1228 -1.1205 5 6 2.1094 1.6392 -2.5376 6 6 3.4260 1.1166 -3.0519 7 1 4.2992 1.1335 -2.4165 8 6 3.5160 0.6171 -4.3338 9 7 2.4529 0.5970 -5.1079 10 14 5.1481 -0.0300 -4.9717 11 1 6.1815 0.1049 -3.9140 12 1 5.0026 -1.4605 -5.3427 13 1 5.5579 0.7519 -6.1660 14 6 2.7115 3.3444 -0.7698 15 6 2.7278 3.3887 0.6945 16 6 2.2816 2.1273 1.1271 17 6 2.1891 1.8651 2.4903 18 6 2.5320 2.8382 3.4029 19 6 2.9718 4.0843 2.9783 20 6 3.0660 4.3685 1.6325 21 9 3.4892 5.5842 1.2227 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.3673 0.8412 -2.5622 28 1 1.7759 2.4652 -3.1657 29 1 2.5162 0.2459 -6.0099 30 1 2.9939 4.1428 -1.4400 31 1 1.8486 0.8990 2.8328 32 1 2.4578 2.6294 4.4600 33 1 3.2374 4.8368 3.7060 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259938803.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:40 Heat of formation + Delta-G solvation = -17.586929 kcal Electronic energy + Delta-G solvation = -17417.396633 eV Core-core repulsion = 14549.775171 eV Total energy + Delta-G solvation = -2867.621462 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.76475 -42.27087 -38.05204 -35.40813 -34.71444 -32.17775 -31.27936 -29.58881 -28.40203 -25.44022 -24.51304 -22.70670 -22.48071 -20.57448 -18.65125 -18.38718 -17.50333 -16.86522 -16.64055 -16.49791 -16.36923 -15.74912 -15.41275 -14.82273 -14.43499 -14.26481 -13.83259 -13.76179 -13.51276 -13.35557 -12.92645 -12.73104 -12.63811 -12.39876 -12.25555 -12.10937 -12.02490 -11.77943 -11.44095 -10.66815 -10.41435 -9.08875 -8.49700 -8.23245 -6.40250 0.07862 0.59590 1.36460 1.38545 1.50811 1.79211 1.91549 2.38256 2.81392 3.04974 3.39905 3.75532 3.82614 3.96485 4.17805 4.20247 4.24727 4.40649 4.45738 4.69048 4.75767 4.84051 4.86698 5.00544 5.13471 5.20262 5.23466 5.27589 5.39638 5.50768 5.65431 5.77915 6.01302 6.02853 6.32247 6.49192 6.69449 7.29048 8.82480 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.024304 B = 0.006697 C = 0.005808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.818230 B = 4180.243933 C = 4819.374091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.099 3.901 3 N -0.477 5.477 4 C 0.124 3.876 5 C 0.083 3.917 6 C -0.531 4.531 7 H 0.049 0.951 8 C 0.014 3.986 9 N -0.923 5.923 10 Si 0.963 3.037 11 H -0.271 1.271 12 H -0.271 1.271 13 H -0.277 1.277 14 C -0.250 4.250 15 C -0.168 4.168 16 C 0.103 3.897 17 C -0.133 4.133 18 C -0.073 4.073 19 C -0.177 4.177 20 C 0.105 3.895 21 F -0.153 7.153 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.113 0.887 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.178 0.822 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -0.696 16.548 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.159 5.159 4 C 0.016 3.984 5 C 0.046 3.954 6 C -0.569 4.569 7 H 0.067 0.933 8 C -0.185 4.185 9 N -0.562 5.562 10 Si 0.788 3.212 11 H -0.195 1.195 12 H -0.196 1.196 13 H -0.202 1.202 14 C -0.274 4.274 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.153 4.153 18 C -0.092 4.092 19 C -0.197 4.197 20 C 0.085 3.915 21 F -0.132 7.132 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.131 0.869 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.171 0.829 32 H 0.195 0.805 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.400 -1.044 16.313 16.522 hybrid contribution 0.821 0.269 -1.379 1.627 sum -1.579 -0.775 14.934 15.038 Atomic orbital electron populations 1.22103 0.93475 1.04036 1.02009 1.21951 0.96232 0.79125 1.04823 1.44251 1.55651 1.12900 1.03148 1.20990 0.96984 0.90705 0.89737 1.17768 0.97144 0.95809 0.84729 1.21236 0.95241 1.41477 0.98921 0.93286 1.25801 1.00305 0.95689 0.96692 1.70054 1.30586 1.46624 1.08967 0.85421 0.79224 0.78340 0.78232 1.19508 1.19598 1.20206 1.21305 1.14966 0.98424 0.92675 1.19379 1.08891 0.95460 0.93598 1.18433 1.02127 0.90211 0.89592 1.20452 1.05349 1.02205 0.87311 1.21025 0.96723 0.90602 1.00866 1.21153 1.06085 1.00468 0.91959 1.17458 1.01572 0.79445 0.92996 1.91400 1.87864 1.42233 1.91727 0.91324 0.94336 0.88298 0.90409 0.86872 0.96025 0.96388 0.92276 0.85387 0.82874 0.80498 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.10 3.02 6.25 86.38 0.54 3.56 16 3 N -0.48 -18.31 2.78 -501.49 -1.39 -19.71 16 4 C 0.12 5.76 6.02 40.85 0.25 6.00 16 5 C 0.08 4.38 4.98 29.10 0.14 4.53 16 6 C -0.53 -29.94 9.09 25.60 0.23 -29.71 16 7 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 8 C 0.01 0.80 5.46 84.65 0.46 1.27 16 9 N -0.92 -53.71 13.29 21.45 0.28 -53.42 16 10 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 C -0.25 -11.55 10.95 23.51 0.26 -11.29 16 15 C -0.17 -6.75 6.36 -20.17 -0.13 -6.88 16 16 C 0.10 3.65 6.80 39.02 0.27 3.91 16 17 C -0.13 -3.33 9.95 22.37 0.22 -3.11 16 18 C -0.07 -1.53 10.01 22.29 0.22 -1.31 16 19 C -0.18 -4.50 10.01 22.32 0.22 -4.27 16 20 C 0.10 3.66 7.34 22.56 0.17 3.83 16 21 F -0.15 -5.62 17.28 44.97 0.78 -4.84 16 22 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.08 2.76 7.40 -2.39 -0.02 2.74 16 26 H 0.11 2.62 8.10 -2.39 -0.02 2.60 16 27 H 0.02 1.15 7.34 -2.39 -0.02 1.13 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.13 5.99 8.06 -2.91 -0.02 5.96 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -66.98 291.34 6.39 -60.59 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.10 Total: 8.50 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.59 Total: -36.81 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -1.11 Total: -73.13 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.78 Total: -4.84 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.98 6.39 -60.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259938803.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.001 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds