Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00586 * 2 1 4 4 C 1.40020 * 120.18781 * 269.98140 * 3 2 1 5 5 N 1.36069 * 133.79324 * 0.02562 * 4 3 2 6 6 C 1.29873 * 108.79135 * 180.02562 * 5 4 3 7 7 O 1.34283 * 110.26181 * 359.97438 * 6 5 4 8 8 C 1.35115 * 108.15193 * 0.02562 * 7 6 5 9 9 C 1.38774 * 133.90491 * 179.97438 * 8 7 6 10 10 C 1.37908 * 119.97871 * 179.72095 * 9 8 7 11 11 C 1.38186 * 120.18005 * 89.99986 * 3 2 1 12 12 C 1.50696 * 119.82535 * 359.95855 * 11 3 2 13 13 H 1.08995 * 109.47076 * 359.97438 * 12 11 3 14 14 C 1.53009 * 109.47037 * 239.99948 * 12 11 3 15 15 C 1.50693 * 109.47129 * 120.00217 * 12 11 3 16 16 H 1.08005 * 120.00450 * 5.46428 * 15 12 11 17 17 C 1.37883 * 120.00003 * 185.46608 * 15 12 11 18 18 N 1.31514 * 119.99780 * 9.58906 * 17 15 12 19 19 Si 1.86805 * 119.99988 * 189.59430 * 17 15 12 20 20 H 1.48497 * 109.47208 * 84.99225 * 19 17 15 21 21 H 1.48500 * 109.46738 * 204.99460 * 19 17 15 22 22 H 1.48498 * 109.46826 * 324.99113 * 19 17 15 23 23 H 1.08998 * 109.46921 * 300.00541 * 1 2 3 24 24 H 1.09007 * 109.47230 * 59.99707 * 1 2 3 25 25 H 1.08995 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08005 * 124.86990 * 179.97438 * 6 5 4 27 27 H 1.07993 * 120.00876 * 0.04360 * 9 8 7 28 28 H 1.08003 * 119.73344 * 180.30330 * 10 9 8 29 29 H 1.08998 * 109.47157 * 303.23767 * 14 12 11 30 30 H 1.08999 * 109.46542 * 63.24130 * 14 12 11 31 31 H 1.08991 * 109.46872 * 183.23809 * 14 12 11 32 32 H 0.96999 * 119.99370 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 2.3661 1.8379 -1.2103 5 7 2.1956 1.5033 -2.5182 6 6 2.6807 2.4529 -3.2596 7 8 3.1808 3.4337 -2.4907 8 6 3.0033 3.0864 -1.1971 9 6 3.3122 3.6917 0.0129 10 6 2.9868 3.0673 1.1987 11 6 2.3615 1.8297 1.1945 12 6 2.0185 1.1589 2.4997 13 1 1.5310 0.2046 2.3006 14 6 1.0736 2.0563 3.3015 15 6 3.2797 0.9240 3.2903 16 1 4.2226 1.3078 2.9297 17 6 3.2300 0.2190 4.4742 18 7 2.1270 -0.4082 4.8202 19 14 4.7292 0.1548 5.5868 20 1 4.7452 1.3520 6.4654 21 1 4.6734 -1.0716 6.4222 22 1 5.9606 0.1331 4.7572 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.6818 2.4536 -4.3396 27 1 3.8026 4.6538 0.0259 28 1 3.2246 3.5442 2.1381 29 1 1.5380 3.0310 3.4512 30 1 0.1386 2.1793 2.7551 31 1 0.8713 1.5979 4.2694 32 1 2.0919 -0.9038 5.6533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259948030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = -3.176798 kcal Electronic energy + Delta-G solvation = -17886.151449 eV Core-core repulsion = 15006.782068 eV Total energy + Delta-G solvation = -2879.369381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.88411 -39.02156 -36.46991 -34.53949 -33.85312 -31.23687 -29.27585 -28.25366 -26.24554 -25.14554 -23.34152 -23.06696 -21.21195 -20.24518 -17.72273 -17.61187 -16.40768 -15.98455 -15.87984 -15.17162 -14.85468 -14.74427 -14.37858 -13.44920 -13.00773 -12.66758 -12.08227 -12.04021 -11.83849 -11.54791 -11.24931 -11.10531 -10.90374 -10.73660 -10.41573 -10.34008 -10.16241 -9.76591 -9.30201 -9.11994 -8.36841 -8.09008 -7.75972 -6.06251 -4.08496 1.02221 1.70133 2.76322 2.87820 3.29757 3.36635 3.39623 3.85045 4.18430 4.35629 4.45045 5.09519 5.26334 5.31556 5.49866 5.64382 5.73186 5.81713 5.83356 6.03063 6.22271 6.30383 6.46939 6.64328 6.73887 6.79641 6.90657 7.06876 7.18808 7.62410 7.73409 7.89185 7.93235 8.12546 8.32229 8.93017 9.54242 11.02649 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029235 B = 0.007168 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.523287 B = 3905.097140 C = 4352.486195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.318 6.318 3 C 0.137 3.863 4 C -0.005 4.005 5 N -0.472 5.472 6 C 0.203 3.797 7 O -0.224 6.224 8 C 0.003 3.997 9 C -0.113 4.113 10 C -0.062 4.062 11 C -0.050 4.050 12 C 0.072 3.928 13 H 0.057 0.943 14 C -0.128 4.128 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.890 3.110 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.049 0.951 24 H 0.037 0.963 25 H 0.090 0.910 26 H 0.249 0.751 27 H 0.130 0.870 28 H 0.147 0.853 29 H 0.032 0.968 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 6.934 -10.562 12.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.233 6.233 3 C 0.092 3.908 4 C -0.116 4.116 5 N -0.200 5.200 6 C -0.029 4.029 7 O -0.115 6.115 8 C -0.047 4.047 9 C -0.132 4.132 10 C -0.080 4.080 11 C -0.052 4.052 12 C 0.054 3.946 13 H 0.075 0.925 14 C -0.186 4.186 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.718 3.282 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.108 0.892 26 H 0.265 0.735 27 H 0.148 0.852 28 H 0.165 0.835 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.822 6.077 -10.614 12.365 hybrid contribution 1.012 0.622 0.597 1.329 sum -0.810 6.699 -10.016 12.077 Atomic orbital electron populations 1.22911 0.79357 1.02845 1.00103 1.86022 1.19411 1.24027 1.93888 1.17706 0.98302 0.86478 0.88290 1.20102 1.05302 0.94595 0.91633 1.70542 1.20866 1.27261 1.01373 1.28072 0.93782 0.81994 0.99008 1.84469 1.67100 1.44453 1.15510 1.20098 1.04445 0.96377 0.83731 1.19876 1.04670 1.01294 0.87330 1.20996 0.95688 0.94436 0.96911 1.20932 0.94887 0.93080 0.96298 1.17874 0.96235 0.94790 0.85713 0.92542 1.21789 0.96305 0.98706 1.01806 1.21010 0.93062 1.35308 1.05534 0.92357 1.24925 0.96076 0.94589 0.97996 1.69964 1.27180 1.31770 1.23403 0.86630 0.83320 0.77470 0.80773 1.20498 1.21272 1.19911 0.93195 0.94427 0.89176 0.73501 0.85197 0.83514 0.94910 0.96914 0.91047 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.87 101.05 1.10 1.83 16 2 O -0.32 -6.96 9.26 -19.40 -0.18 -7.14 16 3 C 0.14 2.96 5.73 -38.93 -0.22 2.74 16 4 C 0.00 -0.10 7.18 -84.59 -0.61 -0.71 16 5 N -0.47 -8.40 11.34 -12.46 -0.14 -8.54 16 6 C 0.20 2.69 13.13 51.93 0.68 3.37 16 7 O -0.22 -3.42 10.78 3.48 0.04 -3.38 16 8 C 0.00 0.05 7.43 -38.65 -0.29 -0.23 16 9 C -0.11 -1.87 10.06 -39.50 -0.40 -2.27 16 10 C -0.06 -1.16 8.60 -39.55 -0.34 -1.50 16 11 C -0.05 -1.09 4.76 -104.49 -0.50 -1.58 16 12 C 0.07 1.76 2.30 -92.92 -0.21 1.55 16 13 H 0.06 1.53 6.64 -51.93 -0.34 1.19 16 14 C -0.13 -2.88 8.92 37.16 0.33 -2.55 16 15 C -0.51 -13.66 8.19 -34.44 -0.28 -13.94 16 16 H 0.06 1.55 7.56 -52.48 -0.40 1.15 16 17 C 0.07 1.80 5.17 -17.82 -0.09 1.71 16 18 N -0.89 -24.89 12.16 55.43 0.67 -24.22 16 19 Si 0.89 20.92 29.55 -169.99 -5.02 15.90 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 26 H 0.25 1.67 8.06 -52.48 -0.42 1.25 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.15 2.55 7.51 -52.48 -0.39 2.16 16 29 H 0.03 0.67 7.25 -51.93 -0.38 0.29 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 1.76 6.84 -51.93 -0.36 1.41 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 279.46 15.07 4.21 4.21 Total: -1.00 -31.54 279.46 -4.78 -36.33 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -3.54 Total: -1.57 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.83 Total: -11.59 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.53 Total: -32.76 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.14 Total: -10.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.54 -4.78 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.153 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds