Wall clock time and date at job start Mon Mar 30 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00586 * 2 1 4 4 C 1.40020 * 120.18781 * 269.98140 * 3 2 1 5 5 N 1.36069 * 133.79324 * 0.02562 * 4 3 2 6 6 C 1.29873 * 108.79135 * 180.02562 * 5 4 3 7 7 O 1.34283 * 110.26181 * 359.97438 * 6 5 4 8 8 C 1.35115 * 108.15193 * 0.02562 * 7 6 5 9 9 C 1.38774 * 133.90491 * 179.97438 * 8 7 6 10 10 C 1.37908 * 119.97871 * 179.72095 * 9 8 7 11 11 C 1.38186 * 120.18005 * 89.99986 * 3 2 1 12 12 C 1.50696 * 119.82535 * 359.95855 * 11 3 2 13 13 H 1.08995 * 109.47076 * 359.97438 * 12 11 3 14 14 C 1.53009 * 109.47037 * 239.99948 * 12 11 3 15 15 C 1.50693 * 109.47129 * 120.00217 * 12 11 3 16 16 H 1.08005 * 120.00450 * 5.46428 * 15 12 11 17 17 C 1.37883 * 120.00003 * 185.46608 * 15 12 11 18 18 N 1.31514 * 119.99780 * 9.58906 * 17 15 12 19 19 Si 1.86805 * 119.99988 * 189.59430 * 17 15 12 20 20 H 1.48497 * 109.47208 * 84.99225 * 19 17 15 21 21 H 1.48500 * 109.46738 * 204.99460 * 19 17 15 22 22 H 1.48498 * 109.46826 * 324.99113 * 19 17 15 23 23 H 1.08998 * 109.46921 * 300.00541 * 1 2 3 24 24 H 1.09007 * 109.47230 * 59.99707 * 1 2 3 25 25 H 1.08995 * 109.47538 * 179.97438 * 1 2 3 26 26 H 1.08005 * 124.86990 * 179.97438 * 6 5 4 27 27 H 1.07993 * 120.00876 * 0.04360 * 9 8 7 28 28 H 1.08003 * 119.73344 * 180.30330 * 10 9 8 29 29 H 1.08998 * 109.47157 * 303.23767 * 14 12 11 30 30 H 1.08999 * 109.46542 * 63.24130 * 14 12 11 31 31 H 1.08991 * 109.46872 * 183.23809 * 14 12 11 32 32 H 0.96999 * 119.99370 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 2.3661 1.8379 -1.2103 5 7 2.1956 1.5033 -2.5182 6 6 2.6807 2.4529 -3.2596 7 8 3.1808 3.4337 -2.4907 8 6 3.0033 3.0864 -1.1971 9 6 3.3122 3.6917 0.0129 10 6 2.9868 3.0673 1.1987 11 6 2.3615 1.8297 1.1945 12 6 2.0185 1.1589 2.4997 13 1 1.5310 0.2046 2.3006 14 6 1.0736 2.0563 3.3015 15 6 3.2797 0.9240 3.2903 16 1 4.2226 1.3078 2.9297 17 6 3.2300 0.2190 4.4742 18 7 2.1270 -0.4082 4.8202 19 14 4.7292 0.1548 5.5868 20 1 4.7452 1.3520 6.4654 21 1 4.6734 -1.0716 6.4222 22 1 5.9606 0.1331 4.7572 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 2.6818 2.4536 -4.3396 27 1 3.8026 4.6538 0.0259 28 1 3.2246 3.5442 2.1381 29 1 1.5380 3.0310 3.4512 30 1 0.1386 2.1793 2.7551 31 1 0.8713 1.5979 4.2694 32 1 2.0919 -0.9038 5.6533 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259948030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:48 Heat of formation + Delta-G solvation = -25.541916 kcal Electronic energy + Delta-G solvation = -17887.121273 eV Core-core repulsion = 15006.782068 eV Total energy + Delta-G solvation = -2880.339206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.15311 -40.52294 -37.98049 -36.07085 -35.43001 -33.09707 -30.68990 -29.76914 -27.69862 -27.15574 -24.83148 -24.40568 -22.56790 -21.92751 -19.20090 -19.01253 -17.88882 -17.65278 -17.43169 -16.69776 -16.32327 -16.19402 -15.95920 -14.84466 -14.67511 -14.33404 -13.74665 -13.53709 -13.36314 -13.30913 -12.77346 -12.73908 -12.51564 -12.38688 -12.18841 -12.11967 -11.60785 -11.45698 -11.05362 -10.90632 -10.42416 -9.51015 -9.23815 -8.11457 -6.20245 -0.28765 0.24925 1.44050 1.44674 1.53232 1.54249 1.68008 2.39172 2.49376 2.90815 3.09489 3.20086 3.76451 4.03056 4.19697 4.25574 4.36392 4.41844 4.44528 4.64291 4.73402 4.88086 4.93160 5.10284 5.15042 5.21759 5.36680 5.42294 5.60969 5.66807 5.94110 6.00112 6.31610 6.42611 6.72940 6.88094 7.45632 8.96903 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.029235 B = 0.007168 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.523287 B = 3905.097140 C = 4352.486195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.348 6.348 3 C 0.109 3.891 4 C -0.022 4.022 5 N -0.519 5.519 6 C 0.243 3.757 7 O -0.217 6.217 8 C -0.005 4.005 9 C -0.090 4.090 10 C -0.074 4.074 11 C -0.072 4.072 12 C 0.076 3.924 13 H 0.017 0.983 14 C -0.117 4.117 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 0.952 3.048 20 H -0.267 1.267 21 H -0.288 1.288 22 H -0.272 1.272 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.108 0.892 26 H 0.313 0.687 27 H 0.171 0.829 28 H 0.157 0.843 29 H 0.049 0.951 30 H 0.026 0.974 31 H 0.043 0.957 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 8.881 -12.319 15.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.264 6.264 3 C 0.064 3.936 4 C -0.132 4.132 5 N -0.248 5.248 6 C 0.012 3.988 7 O -0.108 6.108 8 C -0.055 4.055 9 C -0.109 4.109 10 C -0.092 4.092 11 C -0.074 4.074 12 C 0.058 3.942 13 H 0.035 0.965 14 C -0.175 4.175 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.181 4.181 18 N -0.556 5.556 19 Si 0.777 3.223 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.197 1.197 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.327 0.673 27 H 0.189 0.811 28 H 0.174 0.826 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.668 8.033 -12.374 14.768 hybrid contribution 0.632 0.030 0.919 1.116 sum -0.036 8.064 -11.455 14.009 Atomic orbital electron populations 1.23027 0.77824 1.04125 1.00144 1.85952 1.21258 1.25133 1.94107 1.17902 0.99607 0.86751 0.89303 1.20198 1.05563 0.95393 0.92071 1.70543 1.23833 1.29563 1.00845 1.29517 0.89091 0.79453 1.00709 1.84519 1.67027 1.44826 1.14455 1.20286 1.04281 0.95817 0.85073 1.20188 1.02593 1.02071 0.86029 1.21051 0.96231 0.93568 0.98367 1.20747 0.97028 0.94626 0.94991 1.17633 0.95381 0.93757 0.87453 0.96521 1.21618 0.96848 0.98841 1.00151 1.21337 0.93849 1.34989 1.05978 0.92649 1.25686 0.98713 0.94371 0.99369 1.70090 1.29084 1.32620 1.23782 0.85664 0.79964 0.77677 0.78955 1.19212 1.21347 1.19705 0.94125 0.93227 0.87350 0.67282 0.81131 0.82596 0.93156 0.95477 0.93788 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 10.87 113.37 1.23 2.77 16 2 O -0.35 -15.90 9.26 -92.33 -0.85 -16.75 16 3 C 0.11 4.82 5.73 22.69 0.13 4.94 16 4 C -0.02 -0.85 7.18 39.39 0.28 -0.56 16 5 N -0.52 -17.47 11.34 -308.14 -3.49 -20.96 16 6 C 0.24 5.40 13.13 130.53 1.71 7.12 16 7 O -0.22 -5.74 10.78 -10.47 -0.11 -5.85 16 8 C 0.00 -0.15 7.43 22.87 0.17 0.02 16 9 C -0.09 -2.76 10.06 22.32 0.22 -2.53 16 10 C -0.07 -2.69 8.60 22.29 0.19 -2.50 16 11 C -0.07 -3.19 4.76 -19.78 -0.09 -3.28 16 12 C 0.08 3.86 2.30 -12.29 -0.03 3.83 16 13 H 0.02 0.96 6.64 -2.39 -0.02 0.94 16 14 C -0.12 -5.38 8.92 71.99 0.64 -4.74 16 15 C -0.52 -28.63 8.19 25.60 0.21 -28.42 16 16 H 0.06 2.98 7.56 -2.91 -0.02 2.96 16 17 C 0.02 0.98 5.17 84.66 0.44 1.42 16 18 N -0.92 -53.18 12.16 21.45 0.26 -52.92 16 19 Si 0.95 43.33 29.55 68.60 2.03 45.36 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 H 0.04 1.50 8.09 -2.39 -0.02 1.48 16 24 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 25 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 26 H 0.31 2.20 8.06 -2.91 -0.02 2.17 16 27 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.16 5.23 7.51 -2.91 -0.02 5.21 16 29 H 0.05 2.08 7.25 -2.39 -0.02 2.06 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 2.23 6.84 -2.39 -0.02 2.22 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -71.28 279.46 4.07 -67.21 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.13 Total: 5.84 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 5.11 Total: -21.93 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -3.23 Total: -73.88 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.97 Total: -22.60 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.28 4.07 -67.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.665 kcal (2) G-P(sol) polarization free energy of solvation -71.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds