Wall clock time and date at job start Mon Mar 30 2020 05:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 117.00129 * 2 1 4 4 C 1.40018 * 120.18242 * 270.01973 * 3 2 1 5 5 N 1.36061 * 133.79627 * 359.97346 * 4 3 2 6 6 C 1.29876 * 108.79589 * 180.02562 * 5 4 3 7 7 O 1.34280 * 110.26016 * 359.74663 * 6 5 4 8 8 C 1.35119 * 108.14675 * 0.40599 * 7 6 5 9 9 C 1.38775 * 133.89969 * 179.89694 * 8 7 6 10 10 C 1.37905 * 119.98043 * 179.68442 * 9 8 7 11 11 C 1.38182 * 120.18878 * 89.99730 * 3 2 1 12 12 C 1.50707 * 119.82240 * 0.04149 * 11 3 2 13 13 H 1.09001 * 109.46827 * 359.97438 * 12 11 3 14 14 C 1.52996 * 109.46916 * 119.97663 * 12 11 3 15 15 C 1.50697 * 109.47148 * 239.98049 * 12 11 3 16 16 H 1.07996 * 120.00437 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99440 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99670 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00194 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.46723 * 89.99902 * 19 17 15 21 21 H 1.48499 * 109.46819 * 209.99753 * 19 17 15 22 22 H 1.48494 * 109.47040 * 330.00128 * 19 17 15 23 23 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47105 * 300.00301 * 1 2 3 25 25 H 1.08995 * 109.46873 * 60.00215 * 1 2 3 26 26 H 1.08004 * 124.87479 * 180.02562 * 6 5 4 27 27 H 1.08002 * 120.00785 * 359.66050 * 9 8 7 28 28 H 1.07996 * 119.73476 * 180.02562 * 10 9 8 29 29 H 1.09003 * 109.47384 * 180.02562 * 14 12 11 30 30 H 1.09003 * 109.47839 * 300.00713 * 14 12 11 31 31 H 1.09001 * 109.47216 * 60.00424 * 14 12 11 32 32 H 0.97002 * 119.99801 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3652 1.8382 -1.2104 5 7 2.1947 1.5036 -2.5181 6 6 2.6788 2.4536 -3.2597 7 8 3.1738 3.4371 -2.4910 8 6 3.0015 3.0872 -1.1973 9 6 3.3100 3.6928 0.0126 10 6 2.9905 3.0656 1.1985 11 6 2.3614 1.8299 1.1944 12 6 2.0202 1.1584 2.4997 13 1 1.5338 0.2034 2.3007 14 6 3.3016 0.9208 3.3012 15 6 1.0893 2.0410 3.2905 16 1 0.7757 2.9928 2.8880 17 6 0.6371 1.6328 4.5274 18 7 -0.1749 2.4033 5.2178 19 14 1.1790 -0.0139 5.2233 20 1 2.4229 0.1680 6.0139 21 1 0.1102 -0.5567 6.0998 22 1 1.4347 -0.9620 4.1093 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.6790 2.4548 -4.3397 27 1 3.8007 4.6549 0.0255 28 1 3.2320 3.5407 2.1378 29 1 3.0549 0.4347 4.2452 30 1 3.9750 0.2825 2.7293 31 1 3.7879 1.8758 3.5003 32 1 -0.4927 2.1163 6.0882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259948033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:52 Heat of formation + Delta-G solvation = 5.319016 kcal Electronic energy + Delta-G solvation = -17974.276396 eV Core-core repulsion = 15095.275420 eV Total energy + Delta-G solvation = -2879.000975 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.94922 -39.13476 -36.57491 -34.64800 -33.96176 -31.60528 -29.34905 -28.64663 -26.35616 -25.10408 -23.50053 -23.13442 -21.27990 -20.26158 -17.78984 -17.67849 -16.50508 -16.42722 -15.91507 -15.22626 -14.94293 -14.89063 -14.46591 -13.55988 -13.07806 -12.82745 -12.35107 -12.23899 -12.08668 -11.89261 -11.38904 -11.23125 -11.05014 -10.87357 -10.41665 -10.34658 -10.00698 -9.64326 -9.38550 -9.19183 -8.64409 -8.16169 -7.85849 -6.15219 -4.16197 0.95588 1.60951 2.70442 2.82235 3.23666 3.36019 3.38482 3.74191 4.12447 4.33928 4.35520 5.02602 5.17605 5.22723 5.43860 5.54697 5.70851 5.78041 5.87714 6.00321 6.10801 6.22553 6.32730 6.40708 6.46708 6.54737 6.67521 6.80602 6.95021 7.04158 7.44642 7.62784 7.68025 8.03043 8.40851 8.86892 9.45709 10.97056 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.007435 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.059462 B = 3765.017647 C = 4111.148430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.326 6.326 3 C 0.139 3.861 4 C -0.005 4.005 5 N -0.472 5.472 6 C 0.205 3.795 7 O -0.222 6.222 8 C 0.007 3.993 9 C -0.111 4.111 10 C -0.056 4.056 11 C -0.045 4.045 12 C 0.041 3.959 13 H 0.048 0.952 14 C -0.144 4.144 15 C -0.514 4.514 16 H 0.077 0.923 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.263 1.263 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.250 0.750 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 0.074 -12.002 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.242 6.242 3 C 0.094 3.906 4 C -0.116 4.116 5 N -0.201 5.201 6 C -0.027 4.027 7 O -0.114 6.114 8 C -0.043 4.043 9 C -0.130 4.130 10 C -0.075 4.075 11 C -0.047 4.047 12 C 0.022 3.978 13 H 0.066 0.934 14 C -0.201 4.201 15 C -0.552 4.552 16 H 0.095 0.905 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.714 3.286 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.188 1.188 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.266 0.734 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.271 -0.635 -12.032 13.151 hybrid contribution 0.315 -0.039 0.472 0.569 sum 5.586 -0.674 -11.560 12.856 Atomic orbital electron populations 1.22997 0.78658 1.02783 1.01242 1.85926 1.20084 1.24175 1.94031 1.17665 0.98110 0.86528 0.88311 1.20053 1.05272 0.94653 0.91643 1.70539 1.20665 1.27551 1.01301 1.28092 0.93686 0.81835 0.99038 1.84482 1.67302 1.44139 1.15479 1.20124 1.04160 0.96205 0.83783 1.19890 1.04670 1.01211 0.87230 1.20991 0.95437 0.93865 0.97161 1.20460 0.95399 0.93713 0.95154 1.18295 0.94207 0.97131 0.88173 0.93388 1.22148 0.98237 1.00479 0.99202 1.20918 1.27143 1.05280 1.01847 0.90522 1.24956 0.94424 0.96782 0.96615 1.69884 1.33046 1.37225 1.13227 0.86896 0.77356 0.85051 0.79311 1.20466 1.22450 1.18790 0.89349 0.91870 0.94214 0.73434 0.84977 0.83217 0.93813 0.94841 0.92649 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.87 101.05 1.10 1.76 16 2 O -0.33 -6.74 9.26 -19.40 -0.18 -6.92 16 3 C 0.14 2.87 5.73 -38.93 -0.22 2.65 16 4 C 0.00 -0.09 7.18 -84.59 -0.61 -0.70 16 5 N -0.47 -8.12 11.34 -12.46 -0.14 -8.26 16 6 C 0.20 2.62 13.13 51.94 0.68 3.30 16 7 O -0.22 -3.30 10.78 3.48 0.04 -3.27 16 8 C 0.01 0.12 7.43 -38.65 -0.29 -0.17 16 9 C -0.11 -1.80 10.06 -39.50 -0.40 -2.20 16 10 C -0.06 -1.03 8.68 -39.55 -0.34 -1.37 16 11 C -0.05 -0.95 4.75 -104.48 -0.50 -1.44 16 12 C 0.04 0.94 2.03 -92.92 -0.19 0.75 16 13 H 0.05 1.16 5.76 -51.93 -0.30 0.86 16 14 C -0.14 -3.03 8.48 37.16 0.32 -2.72 16 15 C -0.51 -13.63 8.81 -34.44 -0.30 -13.94 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 18 N -0.90 -26.35 13.96 55.43 0.77 -25.57 16 19 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 20 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 21 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.25 1.57 8.06 -52.48 -0.42 1.14 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.15 2.59 7.55 -52.49 -0.40 2.19 16 29 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 1.08 7.37 -51.93 -0.38 0.70 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 271.53 15.07 4.09 4.09 Total: -1.00 -31.91 271.53 -3.78 -35.69 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.37 Total: -0.80 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -0.85 Total: -12.12 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.63 Total: -33.84 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.14 Total: -10.18 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.91 -3.78 -35.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.013 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds