Wall clock time and date at job start Mon Mar 30 2020 05:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 117.00129 * 2 1 4 4 C 1.40018 * 120.18242 * 270.01973 * 3 2 1 5 5 N 1.36061 * 133.79627 * 359.97346 * 4 3 2 6 6 C 1.29876 * 108.79589 * 180.02562 * 5 4 3 7 7 O 1.34280 * 110.26016 * 359.74663 * 6 5 4 8 8 C 1.35119 * 108.14675 * 0.40599 * 7 6 5 9 9 C 1.38775 * 133.89969 * 179.89694 * 8 7 6 10 10 C 1.37905 * 119.98043 * 179.68442 * 9 8 7 11 11 C 1.38182 * 120.18878 * 89.99730 * 3 2 1 12 12 C 1.50707 * 119.82240 * 0.04149 * 11 3 2 13 13 H 1.09001 * 109.46827 * 359.97438 * 12 11 3 14 14 C 1.52996 * 109.46916 * 119.97663 * 12 11 3 15 15 C 1.50697 * 109.47148 * 239.98049 * 12 11 3 16 16 H 1.07996 * 120.00437 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99440 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99670 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00194 * 0.02562 * 17 15 12 20 20 H 1.48507 * 109.46723 * 89.99902 * 19 17 15 21 21 H 1.48499 * 109.46819 * 209.99753 * 19 17 15 22 22 H 1.48494 * 109.47040 * 330.00128 * 19 17 15 23 23 H 1.08999 * 109.47054 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47105 * 300.00301 * 1 2 3 25 25 H 1.08995 * 109.46873 * 60.00215 * 1 2 3 26 26 H 1.08004 * 124.87479 * 180.02562 * 6 5 4 27 27 H 1.08002 * 120.00785 * 359.66050 * 9 8 7 28 28 H 1.07996 * 119.73476 * 180.02562 * 10 9 8 29 29 H 1.09003 * 109.47384 * 180.02562 * 14 12 11 30 30 H 1.09003 * 109.47839 * 300.00713 * 14 12 11 31 31 H 1.09001 * 109.47216 * 60.00424 * 14 12 11 32 32 H 0.97002 * 119.99801 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3652 1.8382 -1.2104 5 7 2.1947 1.5036 -2.5181 6 6 2.6788 2.4536 -3.2597 7 8 3.1738 3.4371 -2.4910 8 6 3.0015 3.0872 -1.1973 9 6 3.3100 3.6928 0.0126 10 6 2.9905 3.0656 1.1985 11 6 2.3614 1.8299 1.1944 12 6 2.0202 1.1584 2.4997 13 1 1.5338 0.2034 2.3007 14 6 3.3016 0.9208 3.3012 15 6 1.0893 2.0410 3.2905 16 1 0.7757 2.9928 2.8880 17 6 0.6371 1.6328 4.5274 18 7 -0.1749 2.4033 5.2178 19 14 1.1790 -0.0139 5.2233 20 1 2.4229 0.1680 6.0139 21 1 0.1102 -0.5567 6.0998 22 1 1.4347 -0.9620 4.1093 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 2.6790 2.4548 -4.3397 27 1 3.8007 4.6549 0.0255 28 1 3.2320 3.5407 2.1378 29 1 3.0549 0.4347 4.2452 30 1 3.9750 0.2825 2.7293 31 1 3.7879 1.8758 3.5003 32 1 -0.4927 2.1163 6.0882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259948033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:51 Heat of formation + Delta-G solvation = -18.714832 kcal Electronic energy + Delta-G solvation = -17975.318582 eV Core-core repulsion = 15095.275420 eV Total energy + Delta-G solvation = -2880.043161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.18370 -40.59614 -38.05175 -36.16505 -35.45946 -33.55561 -30.74554 -30.08297 -27.79864 -27.05675 -24.96094 -24.44103 -22.60169 -21.90149 -19.30280 -19.06740 -18.25219 -17.72031 -17.46996 -16.76434 -16.45028 -16.23130 -15.99349 -14.97275 -14.88767 -14.44698 -14.08110 -13.86821 -13.54468 -13.37042 -12.89784 -12.86760 -12.53986 -12.38842 -12.20457 -11.88603 -11.56313 -11.38758 -11.15038 -10.97174 -10.73325 -9.55248 -9.28748 -8.28794 -6.32491 -0.32747 0.19238 1.31439 1.38774 1.48378 1.51262 1.65523 2.32867 2.34394 2.90969 3.03731 3.09214 3.72554 3.93051 4.15411 4.18099 4.29901 4.39906 4.46592 4.52602 4.67091 4.70734 4.82285 4.84537 5.01223 5.12460 5.15238 5.33634 5.37244 5.57628 5.63352 5.75987 6.28521 6.35640 6.67837 6.73048 7.32332 8.86910 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.007435 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.059462 B = 3765.017647 C = 4111.148430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.342 6.342 3 C 0.113 3.887 4 C -0.020 4.020 5 N -0.517 5.517 6 C 0.244 3.756 7 O -0.217 6.217 8 C -0.002 4.002 9 C -0.091 4.091 10 C -0.072 4.072 11 C -0.067 4.067 12 C 0.045 3.955 13 H 0.033 0.967 14 C -0.142 4.142 15 C -0.505 4.505 16 H 0.042 0.958 17 C 0.023 3.977 18 N -0.943 5.943 19 Si 0.939 3.061 20 H -0.263 1.263 21 H -0.300 1.300 22 H -0.254 1.254 23 H 0.116 0.884 24 H 0.037 0.963 25 H 0.045 0.955 26 H 0.313 0.687 27 H 0.169 0.831 28 H 0.153 0.847 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.221 0.037 -14.108 15.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.259 6.259 3 C 0.069 3.931 4 C -0.130 4.130 5 N -0.246 5.246 6 C 0.014 3.986 7 O -0.108 6.108 8 C -0.052 4.052 9 C -0.109 4.109 10 C -0.090 4.090 11 C -0.069 4.069 12 C 0.026 3.974 13 H 0.051 0.949 14 C -0.199 4.199 15 C -0.543 4.543 16 H 0.060 0.940 17 C -0.175 4.175 18 N -0.583 5.583 19 Si 0.767 3.233 20 H -0.189 1.189 21 H -0.228 1.228 22 H -0.178 1.178 23 H 0.134 0.866 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.327 0.673 27 H 0.187 0.813 28 H 0.171 0.829 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.915 -0.678 -14.150 15.764 hybrid contribution -0.205 0.073 0.874 0.901 sum 6.709 -0.605 -13.276 14.888 Atomic orbital electron populations 1.23062 0.77812 1.04324 1.00231 1.85888 1.21093 1.24800 1.94135 1.17811 0.99222 0.87001 0.89107 1.20173 1.05373 0.95314 0.92172 1.70548 1.23536 1.29757 1.00723 1.29539 0.89027 0.79323 1.00735 1.84530 1.67259 1.44581 1.14455 1.20283 1.04116 0.95766 0.85040 1.20171 1.02750 1.01892 0.86111 1.21024 0.96290 0.93316 0.98341 1.20343 0.97275 0.95019 0.94222 1.18110 0.94239 0.95718 0.89336 0.94911 1.22084 0.97628 1.01539 0.98608 1.21083 1.27081 1.04327 1.01828 0.93997 1.25688 0.94613 1.00078 0.97138 1.70015 1.35051 1.39334 1.13910 0.85991 0.77315 0.81157 0.78866 1.18877 1.22755 1.17809 0.86564 0.94379 0.93617 0.67261 0.81305 0.82911 0.94650 0.92743 0.91513 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 10.87 113.37 1.23 2.65 16 2 O -0.34 -14.31 9.26 -92.34 -0.85 -15.17 16 3 C 0.11 4.71 5.73 22.69 0.13 4.84 16 4 C -0.02 -0.73 7.18 39.39 0.28 -0.45 16 5 N -0.52 -16.59 11.34 -308.15 -3.49 -20.08 16 6 C 0.24 5.18 13.13 130.53 1.71 6.89 16 7 O -0.22 -5.59 10.78 -10.48 -0.11 -5.70 16 8 C 0.00 -0.06 7.43 22.87 0.17 0.11 16 9 C -0.09 -2.75 10.06 22.32 0.22 -2.53 16 10 C -0.07 -2.57 8.68 22.29 0.19 -2.38 16 11 C -0.07 -2.81 4.75 -19.77 -0.09 -2.90 16 12 C 0.04 2.09 2.03 -12.29 -0.02 2.06 16 13 H 0.03 1.61 5.76 -2.39 -0.01 1.60 16 14 C -0.14 -5.85 8.48 71.98 0.61 -5.24 16 15 C -0.51 -27.65 8.81 25.60 0.23 -27.42 16 16 H 0.04 2.52 7.84 -2.91 -0.02 2.50 16 17 C 0.02 1.27 5.45 84.66 0.46 1.74 16 18 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 19 Si 0.94 44.26 24.37 68.60 1.67 45.93 16 20 H -0.26 -11.68 6.87 99.48 0.68 -11.00 16 21 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.25 -11.47 6.53 99.48 0.65 -10.82 16 23 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 24 H 0.04 1.52 8.09 -2.39 -0.02 1.51 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.31 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 28 H 0.15 5.26 7.55 -2.91 -0.02 5.23 16 29 H 0.03 1.50 3.27 -2.39 -0.01 1.49 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.55 7.37 -2.39 -0.02 2.54 16 32 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -71.67 271.53 3.70 -67.97 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.06 Total: 6.57 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 5.13 Total: -22.63 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -3.19 Total: -76.97 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.97 Total: -20.87 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.93 kcal Total: -71.67 3.70 -67.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259948033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds