Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35757 * 117.00017 * 2 1 4 4 C 1.38745 * 119.86227 * 359.97438 * 3 2 1 5 5 C 1.38371 * 120.03954 * 179.97438 * 4 3 2 6 6 O 1.35712 * 120.11947 * 179.97438 * 5 4 3 7 7 C 1.40330 * 119.76589 * 0.02562 * 5 4 3 8 8 C 1.43206 * 120.14098 * 180.02562 * 7 5 4 9 9 N 6.70057 * 117.14816 * 0.02562 * 2 1 3 10 10 C 1.39804 * 119.72536 * 359.96954 * 7 5 4 11 11 C 1.37655 * 119.95612 * 0.02562 * 10 7 5 12 12 C 1.50696 * 119.87929 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47174 * 265.02021 * 12 11 10 14 14 C 1.50696 * 109.47174 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00293 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99793 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99838 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47491 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47559 * 119.99902 * 18 16 14 21 21 H 1.48500 * 109.47040 * 239.99797 * 18 16 14 22 22 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47648 * 300.00197 * 1 2 3 24 24 H 1.09006 * 109.46996 * 59.99998 * 1 2 3 25 25 H 1.08007 * 119.97700 * 359.72694 * 4 3 2 26 26 H 0.96701 * 113.99815 * 90.00308 * 6 5 4 27 27 H 1.08000 * 120.01669 * 180.02562 * 10 7 5 28 28 H 1.08998 * 109.47337 * 25.02626 * 12 11 10 29 29 H 1.09000 * 109.46695 * 145.02132 * 12 11 10 30 30 H 1.08998 * 109.47482 * 300.00516 * 13 12 11 31 31 H 1.09008 * 109.47028 * 60.00727 * 13 12 11 32 32 H 0.97004 * 119.99765 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2869 2.3714 -0.0005 5 6 1.9112 3.6062 0.0000 6 8 1.1710 4.7437 -0.0011 7 6 3.3127 3.6783 0.0005 8 6 3.9672 4.9520 0.0016 9 7 4.4864 5.9624 0.0027 10 6 4.0673 2.5014 0.0012 11 6 3.4344 1.2790 0.0007 12 6 4.2495 0.0115 0.0009 13 6 4.4206 -0.4849 -1.4362 14 6 5.2352 -1.7527 -1.4360 15 1 5.5945 -2.1636 -0.5041 16 6 5.5217 -2.3883 -2.6256 17 7 5.0845 -1.8877 -3.7604 18 14 6.5308 -3.9602 -2.6253 19 1 6.8995 -4.3115 -1.2304 20 1 5.7314 -5.0619 -3.2189 21 1 7.7645 -3.7566 -3.4265 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2085 2.3119 -0.0054 26 1 0.9554 5.0735 0.8821 27 1 5.1462 2.5514 0.0020 28 1 5.2290 0.2095 0.4360 29 1 3.7375 -0.7496 0.5897 30 1 3.4410 -0.6829 -1.8713 31 1 4.9326 0.2762 -2.0250 32 1 5.2858 -2.3350 -4.5973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = -38.793548 kcal Electronic energy + Delta-G solvation = -17013.522784 eV Core-core repulsion = 14132.608944 eV Total energy + Delta-G solvation = -2880.913840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49005 -38.55242 -36.72220 -36.06623 -33.75716 -31.86873 -30.56226 -28.77627 -27.36070 -24.93868 -23.22255 -22.31582 -20.71620 -19.02861 -18.07547 -17.02223 -16.54951 -16.22936 -15.63693 -14.86618 -14.45552 -14.35740 -14.04034 -13.62015 -13.34418 -12.99215 -12.75474 -12.55007 -12.19473 -12.09336 -11.93011 -11.37615 -10.97414 -10.93464 -10.87034 -10.74706 -10.50941 -9.83256 -9.64099 -9.08176 -8.71498 -8.33306 -7.91731 -5.98227 -4.00652 0.86307 1.25883 2.79606 3.03760 3.31565 3.32377 3.39946 3.43650 3.75146 4.00811 4.06341 4.47540 4.79212 4.94722 5.13856 5.19428 5.35277 5.37935 5.52082 5.60567 5.71039 5.92946 6.11708 6.28330 6.47281 6.67167 6.74135 7.06211 7.31973 7.48958 7.63389 7.70293 7.84230 8.02049 8.42240 9.06484 9.63158 11.12950 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.005689 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.662197 B = 4920.393811 C = 5725.815264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.291 6.291 3 C 0.178 3.822 4 C -0.240 4.240 5 C 0.178 3.822 6 O -0.493 6.493 7 C -0.101 4.101 8 C 0.273 3.727 9 N -0.435 5.435 10 C -0.021 4.021 11 C -0.096 4.096 12 C -0.071 4.071 13 C 0.030 3.970 14 C -0.519 4.519 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 H 0.102 0.898 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.141 0.859 26 H 0.393 0.607 27 H 0.144 0.856 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.021 0.979 31 H 0.016 0.984 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.427 6.749 10.008 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.202 6.202 3 C 0.130 3.870 4 C -0.260 4.260 5 C 0.130 3.870 6 O -0.304 6.304 7 C -0.105 4.105 8 C -0.042 4.042 9 N -0.111 5.111 10 C -0.042 4.042 11 C -0.097 4.097 12 C -0.108 4.108 13 C -0.007 4.007 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.121 0.879 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.159 0.841 26 H 0.250 0.750 27 H 0.162 0.838 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.519 8.024 9.216 15.489 hybrid contribution -0.062 -1.018 0.213 1.041 sum -9.582 7.006 9.428 15.159 Atomic orbital electron populations 1.23138 0.78578 1.04327 1.01144 1.86251 1.21071 1.25899 1.86977 1.18954 0.91823 0.83999 0.92205 1.21282 1.00815 0.91080 1.12800 1.17900 0.87083 0.85433 0.96560 1.84770 1.72216 1.39790 1.33584 1.16290 0.91631 0.87290 1.15281 1.25425 0.93135 0.92527 0.93102 1.81184 1.08659 1.11084 1.10204 1.20855 1.00195 0.88881 0.94250 1.19725 0.90733 0.97106 1.02112 1.20729 0.96859 0.91012 1.02242 1.19080 0.97351 0.95698 0.88618 1.21267 1.33013 1.08669 0.92744 0.92526 1.25011 0.96111 0.97597 0.95682 1.69980 1.46006 1.39764 0.97632 0.86561 0.80009 0.83509 0.78063 1.19710 1.21073 1.21085 0.87942 0.92761 0.92413 0.84121 0.75031 0.83843 0.91912 0.91318 0.96077 0.96545 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.80 101.05 0.99 1.22 16 2 O -0.29 -4.42 9.60 -18.98 -0.18 -4.60 16 3 C 0.18 2.67 6.66 -39.08 -0.26 2.41 16 4 C -0.24 -2.98 8.95 -39.35 -0.35 -3.34 16 5 C 0.18 2.25 6.71 -38.75 -0.26 1.99 16 6 O -0.49 -5.38 12.93 -18.84 -0.24 -5.63 16 7 C -0.10 -1.40 5.76 -106.60 -0.61 -2.01 16 8 C 0.27 4.07 14.87 -22.47 -0.33 3.74 16 9 N -0.44 -7.18 18.54 41.84 0.78 -6.41 16 10 C -0.02 -0.31 9.37 -39.21 -0.37 -0.68 16 11 C -0.10 -1.58 5.14 -104.53 -0.54 -2.12 16 12 C -0.07 -1.38 4.99 -27.89 -0.14 -1.52 16 13 C 0.03 0.74 4.95 -27.89 -0.14 0.60 16 14 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 18 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 24 H 0.06 0.53 7.64 -51.93 -0.40 0.14 16 25 H 0.14 1.38 6.27 -52.48 -0.33 1.05 16 26 H 0.39 2.30 9.06 45.56 0.41 2.71 16 27 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 29 H 0.07 1.33 7.68 -51.93 -0.40 0.93 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 291.88 15.07 4.40 4.40 Total: -1.00 -32.87 291.88 -4.72 -37.58 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -2.76 Total: -2.94 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.42 Total: -12.80 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.51 Total: -32.34 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.43 Total: -10.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.87 -4.72 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.209 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds