Wall clock time and date at job start Mon Mar 30 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35757 * 117.00017 * 2 1 4 4 C 1.38745 * 119.86227 * 359.97438 * 3 2 1 5 5 C 1.38371 * 120.03954 * 179.97438 * 4 3 2 6 6 O 1.35712 * 120.11947 * 179.97438 * 5 4 3 7 7 C 1.40330 * 119.76589 * 0.02562 * 5 4 3 8 8 C 1.43206 * 120.14098 * 180.02562 * 7 5 4 9 9 N 6.70057 * 117.14816 * 0.02562 * 2 1 3 10 10 C 1.39804 * 119.72536 * 359.96954 * 7 5 4 11 11 C 1.37655 * 119.95612 * 0.02562 * 10 7 5 12 12 C 1.50696 * 119.87929 * 179.97438 * 11 10 7 13 13 C 1.52996 * 109.47174 * 265.02021 * 12 11 10 14 14 C 1.50696 * 109.47174 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00293 * 0.02562 * 14 13 12 16 16 C 1.37885 * 120.00000 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99793 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99838 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47491 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47559 * 119.99902 * 18 16 14 21 21 H 1.48500 * 109.47040 * 239.99797 * 18 16 14 22 22 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47648 * 300.00197 * 1 2 3 24 24 H 1.09006 * 109.46996 * 59.99998 * 1 2 3 25 25 H 1.08007 * 119.97700 * 359.72694 * 4 3 2 26 26 H 0.96701 * 113.99815 * 90.00308 * 6 5 4 27 27 H 1.08000 * 120.01669 * 180.02562 * 10 7 5 28 28 H 1.08998 * 109.47337 * 25.02626 * 12 11 10 29 29 H 1.09000 * 109.46695 * 145.02132 * 12 11 10 30 30 H 1.08998 * 109.47482 * 300.00516 * 13 12 11 31 31 H 1.09008 * 109.47028 * 60.00727 * 13 12 11 32 32 H 0.97004 * 119.99765 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2869 2.3714 -0.0005 5 6 1.9112 3.6062 0.0000 6 8 1.1710 4.7437 -0.0011 7 6 3.3127 3.6783 0.0005 8 6 3.9672 4.9520 0.0016 9 7 4.4864 5.9624 0.0027 10 6 4.0673 2.5014 0.0012 11 6 3.4344 1.2790 0.0007 12 6 4.2495 0.0115 0.0009 13 6 4.4206 -0.4849 -1.4362 14 6 5.2352 -1.7527 -1.4360 15 1 5.5945 -2.1636 -0.5041 16 6 5.5217 -2.3883 -2.6256 17 7 5.0845 -1.8877 -3.7604 18 14 6.5308 -3.9602 -2.6253 19 1 6.8995 -4.3115 -1.2304 20 1 5.7314 -5.0619 -3.2189 21 1 7.7645 -3.7566 -3.4265 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2085 2.3119 -0.0054 26 1 0.9554 5.0735 0.8821 27 1 5.1462 2.5514 0.0020 28 1 5.2290 0.2095 0.4360 29 1 3.7375 -0.7496 0.5897 30 1 3.4410 -0.6829 -1.8713 31 1 4.9326 0.2762 -2.0250 32 1 5.2858 -2.3350 -4.5973 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974943.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:18 Heat of formation + Delta-G solvation = -61.117177 kcal Electronic energy + Delta-G solvation = -17014.490809 eV Core-core repulsion = 14132.608944 eV Total energy + Delta-G solvation = -2881.881865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.56676 -39.56334 -37.80780 -37.30052 -35.56531 -33.58301 -31.64147 -30.30401 -28.29992 -26.69743 -24.32830 -23.73636 -22.27906 -20.01652 -19.25195 -18.44786 -18.02911 -17.50132 -16.69420 -16.43109 -15.85868 -15.42920 -15.04625 -14.85261 -14.65543 -14.55128 -14.28617 -13.92032 -13.57637 -13.42515 -13.18155 -12.79893 -12.75780 -12.45312 -12.07721 -11.84863 -11.83599 -11.63728 -11.44828 -11.09380 -10.49735 -9.82350 -9.10305 -8.13866 -6.24341 -0.23862 0.18770 1.43593 1.44222 1.57186 1.61508 1.87501 2.35077 2.45540 2.68720 2.90497 3.04762 3.19726 3.78988 3.90370 4.17245 4.37869 4.47999 4.50851 4.61319 4.74166 4.82669 4.95847 4.99976 5.08782 5.22452 5.30855 5.54037 5.60893 5.86281 5.93363 6.30041 6.39007 6.45408 6.72672 6.93542 7.44530 8.97844 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024202 B = 0.005689 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.662197 B = 4920.393811 C = 5725.815264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.322 6.322 3 C 0.177 3.823 4 C -0.231 4.231 5 C 0.201 3.799 6 O -0.497 6.497 7 C -0.111 4.111 8 C 0.290 3.710 9 N -0.466 5.466 10 C -0.015 4.015 11 C -0.128 4.128 12 C -0.055 4.055 13 C 0.037 3.963 14 C -0.537 4.537 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.935 5.935 18 Si 0.962 3.038 19 H -0.260 1.260 20 H -0.280 1.280 21 H -0.281 1.281 22 H 0.113 0.887 23 H 0.083 0.917 24 H 0.065 0.935 25 H 0.173 0.827 26 H 0.419 0.581 27 H 0.148 0.852 28 H 0.070 0.930 29 H 0.065 0.935 30 H -0.009 1.009 31 H -0.011 1.011 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 6.811 11.105 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.129 3.871 4 C -0.250 4.250 5 C 0.153 3.847 6 O -0.311 6.311 7 C -0.116 4.116 8 C -0.024 4.024 9 N -0.142 5.142 10 C -0.035 4.035 11 C -0.129 4.129 12 C -0.092 4.092 13 C 0.000 4.000 14 C -0.575 4.575 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.576 5.576 18 Si 0.787 3.213 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.207 1.207 22 H 0.131 0.869 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.190 0.810 26 H 0.280 0.720 27 H 0.165 0.835 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.008 0.992 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.589 8.099 10.352 16.878 hybrid contribution 0.137 -0.985 -0.118 1.001 sum -10.452 7.114 10.234 16.266 Atomic orbital electron populations 1.23481 0.76023 1.05785 1.02906 1.86210 1.23889 1.26422 1.86876 1.19063 0.91516 0.84939 0.91614 1.21462 1.02132 0.89779 1.11659 1.17898 0.86553 0.86151 0.94116 1.84713 1.71625 1.38943 1.35864 1.16272 0.92316 0.86365 1.16618 1.25481 0.92431 0.92322 0.92156 1.81202 1.09455 1.12057 1.11520 1.20845 1.00571 0.88723 0.93402 1.19476 0.91559 0.96144 1.05752 1.20365 0.98001 0.92602 0.98242 1.18906 0.94862 0.94408 0.91841 1.21749 1.33025 1.09609 0.93076 0.91893 1.25944 0.97335 1.01226 0.95290 1.70118 1.47541 1.41547 0.98347 0.85444 0.78201 0.79047 0.78629 1.18352 1.20561 1.20710 0.86891 0.89847 0.91625 0.81005 0.71973 0.83459 0.91169 0.91631 0.99034 0.99235 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.80 113.37 1.11 1.32 16 2 O -0.32 -9.55 9.60 -90.83 -0.87 -10.42 16 3 C 0.18 5.12 6.66 22.59 0.15 5.27 16 4 C -0.23 -5.11 8.95 22.42 0.20 -4.91 16 5 C 0.20 4.54 6.71 22.81 0.15 4.69 16 6 O -0.50 -9.12 12.93 -90.33 -1.17 -10.29 16 7 C -0.11 -2.94 5.76 -21.14 -0.12 -3.06 16 8 C 0.29 8.32 14.87 88.33 1.31 9.63 16 9 N -0.47 -14.97 18.54 19.00 0.35 -14.61 16 10 C -0.01 -0.44 9.37 22.51 0.21 -0.22 16 11 C -0.13 -4.23 5.14 -19.80 -0.10 -4.33 16 12 C -0.05 -2.17 4.99 29.85 0.15 -2.02 16 13 C 0.04 1.92 4.95 29.85 0.15 2.07 16 14 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 17 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 18 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.08 0.99 7.65 -2.38 -0.02 0.97 16 24 H 0.07 1.06 7.64 -2.38 -0.02 1.04 16 25 H 0.17 2.66 6.27 -2.91 -0.02 2.65 16 26 H 0.42 3.24 9.06 -74.06 -0.67 2.57 16 27 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.07 2.59 8.05 -2.39 -0.02 2.57 16 29 H 0.07 2.58 7.68 -2.39 -0.02 2.56 16 30 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -71.82 291.88 5.01 -66.80 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 0.48 Total: 0.25 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 3.91 Total: -21.01 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: 0.64 Total: -71.36 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -2.04 Total: -20.71 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.82 5.01 -66.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974943.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.686 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds