Wall clock time and date at job start Mon Mar 30 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29834 * 126.33217 * 2 1 4 4 O 1.41323 * 109.71184 * 180.02562 * 3 2 1 5 5 C 1.34777 * 109.42159 * 359.97438 * 4 3 2 6 6 N 1.32562 * 133.11782 * 179.97438 * 5 4 3 7 7 C 1.32259 * 121.46399 * 180.02562 * 6 5 4 8 8 N 1.38694 * 119.34107 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00186 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47267 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47133 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00262 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99983 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00057 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46511 * 90.00112 * 15 13 11 17 17 H 1.48498 * 109.46866 * 209.99894 * 15 13 11 18 18 H 1.48494 * 109.47120 * 330.00411 * 15 13 11 19 19 C 1.39595 * 121.32527 * 0.02562 * 7 6 5 20 20 C 1.36812 * 119.47626 * 0.02562 * 19 7 6 21 21 C 1.40077 * 118.28344 * 359.97438 * 20 19 7 22 22 H 1.09004 * 109.47073 * 269.95928 * 1 2 3 23 23 H 1.09000 * 109.47006 * 29.95263 * 1 2 3 24 24 H 1.08998 * 109.47450 * 149.95601 * 1 2 3 25 25 H 0.97002 * 120.00129 * 0.02562 * 8 7 6 26 26 H 1.09002 * 109.46529 * 299.99343 * 9 8 7 27 27 H 1.08997 * 109.47091 * 59.99440 * 9 8 7 28 28 H 1.09000 * 109.46956 * 300.00232 * 10 9 8 29 29 H 1.08998 * 109.46921 * 59.99494 * 10 9 8 30 30 H 0.96996 * 120.00173 * 179.97438 * 14 13 11 31 31 H 1.07997 * 120.26341 * 179.72712 * 19 7 6 32 32 H 1.08007 * 120.85580 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0459 0.0000 4 8 3.6304 0.6417 -0.0006 5 6 3.6963 -0.7044 -0.0004 6 7 4.7070 -1.5621 -0.0012 7 6 4.5035 -2.8690 -0.0013 8 7 5.5935 -3.7265 -0.0026 9 6 5.3848 -5.1767 -0.0033 10 6 6.7399 -5.8870 -0.0055 11 6 6.5251 -7.3786 -0.0055 12 1 5.5224 -7.7798 -0.0046 13 6 7.6087 -8.2311 -0.0078 14 7 8.8298 -7.7426 -0.0105 15 14 7.3425 -10.0801 -0.0072 16 1 7.2690 -10.5700 -1.4071 17 1 8.4737 -10.7427 0.6904 18 1 6.0734 -10.3972 0.6955 19 6 3.2136 -3.4026 -0.0010 20 6 2.1362 -2.5593 -0.0013 21 6 2.3739 -1.1788 -0.0012 22 1 -0.3633 -0.0007 1.0277 23 1 -0.3633 0.8904 -0.5131 24 1 -0.3634 -0.8896 -0.5145 25 1 6.4942 -3.3662 -0.0032 26 1 4.8252 -5.4635 0.8871 27 1 4.8236 -5.4625 -0.8929 28 1 7.2991 -5.6000 -0.8960 29 1 7.3014 -5.6011 0.8839 30 1 9.5921 -8.3423 -0.0118 31 1 3.0672 -4.4726 -0.0056 32 1 1.1285 -2.9480 -0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988614.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:55 Heat of formation + Delta-G solvation = 69.754194 kcal Electronic energy + Delta-G solvation = -16614.179912 eV Core-core repulsion = 13770.265807 eV Total energy + Delta-G solvation = -2843.914105 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.78611 -39.11499 -35.72896 -34.79928 -33.12410 -32.10461 -30.32745 -28.95607 -28.21467 -24.98526 -23.75740 -22.54993 -21.09650 -20.39748 -17.89547 -17.52038 -17.11953 -16.30061 -16.27619 -14.63513 -14.60158 -14.54956 -14.01289 -13.75178 -13.67264 -13.20779 -13.02179 -12.93700 -12.91498 -12.37480 -11.45462 -11.26823 -11.21806 -11.09036 -10.74058 -10.65962 -9.82463 -9.80877 -9.45433 -9.42063 -9.25377 -8.54150 -7.64763 -6.19104 -4.23982 0.73130 1.30672 2.07823 2.12869 3.22174 3.28612 3.30685 3.41130 3.78426 3.98516 4.14824 4.32771 4.55557 4.84025 5.00967 5.08226 5.12239 5.18054 5.30763 5.53903 5.65756 5.86534 5.92643 6.01081 6.03585 6.36419 6.46761 6.93472 7.23464 7.39576 7.46034 7.69151 7.76652 8.07402 8.19116 8.81462 9.41688 10.92315 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.057697 B = 0.003747 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.179203 B = 7471.419395 C = 7930.849689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.152 3.848 3 N -0.304 5.304 4 O -0.093 6.093 5 C 0.346 3.654 6 N -0.558 5.558 7 C 0.473 3.527 8 N -0.692 5.692 9 C 0.121 3.879 10 C 0.012 3.988 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.060 3.940 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.256 4.256 20 C 0.041 3.959 21 C -0.323 4.323 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.409 0.591 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.148 0.852 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.932 9.567 0.048 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 N -0.054 5.054 4 O -0.095 6.095 5 C 0.159 3.841 6 N -0.291 5.291 7 C 0.228 3.772 8 N -0.319 5.319 9 C -0.001 4.001 10 C -0.025 4.025 11 C -0.565 4.565 12 H 0.078 0.922 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.726 3.274 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.281 4.281 20 C 0.014 3.986 21 C -0.333 4.333 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.245 0.755 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.760 10.971 0.050 18.391 hybrid contribution -0.343 -1.932 -0.006 1.962 sum -15.104 9.039 0.043 17.602 Atomic orbital electron populations 1.20431 0.84842 1.04646 1.04339 1.24290 0.97673 0.89970 0.90810 1.79989 0.84188 1.17440 1.23800 1.89166 1.23291 1.15642 1.81378 1.19831 0.89119 0.85703 0.89436 1.65959 1.33283 1.00895 1.28984 1.18275 0.88008 0.85505 0.85366 1.45392 1.06316 1.06158 1.74017 1.22028 1.02641 0.74890 1.00540 1.19321 0.89679 0.95139 0.98400 1.20965 0.93013 0.90290 1.52276 0.92169 1.25005 0.95087 0.99316 0.94806 1.69950 0.97931 1.35328 1.49637 0.86495 0.77925 0.84781 0.78241 1.20503 1.21106 1.19706 1.21189 0.91061 1.01885 1.13917 1.20490 0.99462 0.89746 0.88895 1.20932 0.92624 0.95436 1.24289 0.88876 0.89641 0.89205 0.75483 0.92082 0.92094 0.95603 0.95598 0.92652 0.83397 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.48 36.01 0.38 -0.17 16 2 C 0.15 1.81 7.46 -80.19 -0.60 1.21 16 3 N -0.30 -4.52 12.82 34.87 0.45 -4.07 16 4 O -0.09 -1.62 12.05 7.82 0.09 -1.53 16 5 C 0.35 5.86 8.64 -16.39 -0.14 5.71 16 6 N -0.56 -9.92 10.42 -12.20 -0.13 -10.04 16 7 C 0.47 7.72 7.63 -155.27 -1.18 6.53 16 8 N -0.69 -11.64 5.72 -60.41 -0.35 -11.99 16 9 C 0.12 2.18 4.81 -4.04 -0.02 2.16 16 10 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 11 C -0.53 -13.60 9.11 -34.44 -0.31 -13.91 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 15 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 C -0.26 -3.45 9.25 -39.59 -0.37 -3.82 16 20 C 0.04 0.47 10.17 -39.41 -0.40 0.07 16 21 C -0.32 -4.43 6.34 -105.11 -0.67 -5.10 16 22 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.41 6.90 8.59 -40.82 -0.35 6.55 16 26 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 27 H 0.06 1.05 7.90 -51.93 -0.41 0.64 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.15 1.77 6.64 -52.49 -0.35 1.42 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -30.45 285.43 -7.06 -37.52 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.60 Total: 0.69 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.55 Total: -5.65 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.71 Total: -50.66 kcal Atomic # 8 Polarization: -1.62 SS G_CDS: 0.09 Total: -1.53 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.45 -7.06 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988614.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.271 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds