Wall clock time and date at job start Mon Mar 30 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 C 1.50707 * 109.46700 * 240.00428 * 2 1 3 5 5 H 1.08000 * 119.99905 * 122.75751 * 4 2 1 6 6 C 1.37879 * 120.00113 * 302.76020 * 4 2 1 7 7 N 1.31510 * 119.99829 * 184.69098 * 6 4 2 8 8 Si 1.86803 * 119.99967 * 4.68819 * 6 4 2 9 9 H 1.48501 * 109.46812 * 92.73322 * 8 6 4 10 10 H 1.48496 * 109.46962 * 212.73184 * 8 6 4 11 11 H 1.48503 * 109.47141 * 332.73436 * 8 6 4 12 12 C 1.50699 * 109.47228 * 120.00680 * 2 1 3 13 13 C 1.37797 * 120.13109 * 125.97572 * 12 2 1 14 14 C 1.38622 * 120.39282 * 179.97438 * 13 12 2 15 15 C 1.38043 * 120.45958 * 359.82328 * 14 13 12 16 16 C 1.38532 * 119.89138 * 0.39903 * 15 14 13 17 17 O 1.35261 * 133.82104 * 179.89826 * 16 15 14 18 18 C 1.34387 * 108.19103 * 179.71710 * 17 16 15 19 19 O 1.35185 * 124.92645 * 180.02562 * 18 17 16 20 20 N 1.30612 * 110.14268 * 359.97438 * 18 17 16 21 21 C 1.36156 * 108.72081 * 0.02562 * 20 18 17 22 22 H 1.09000 * 109.46803 * 305.85534 * 1 2 3 23 23 H 1.09001 * 109.47272 * 65.85248 * 1 2 3 24 24 H 1.09001 * 109.47248 * 185.85748 * 1 2 3 25 25 H 1.09008 * 109.47097 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47745 * 299.99993 * 3 2 1 27 27 H 1.08998 * 109.46991 * 60.00989 * 3 2 1 28 28 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 29 29 H 1.07993 * 119.80801 * 0.02867 * 13 12 2 30 30 H 1.07993 * 119.76806 * 180.02562 * 14 13 12 31 31 H 1.07998 * 120.05261 * 180.02562 * 15 14 13 32 32 H 0.96701 * 113.99577 * 269.95512 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6894 -0.1994 -1.9187 6 6 1.6529 -2.0126 -1.4780 7 7 2.1630 -2.6631 -2.5009 8 14 0.4143 -2.8530 -0.3603 9 1 -0.9524 -2.6731 -0.9124 10 1 0.7273 -4.3022 -0.2759 11 1 0.4836 -2.2518 0.9958 12 6 2.0324 -0.7105 1.2304 13 6 2.9231 -1.7552 1.1107 14 6 3.3891 -2.4122 2.2388 15 6 2.9701 -2.0266 3.4963 16 6 2.0714 -0.9814 3.6343 17 8 1.4849 -0.3847 4.6970 18 6 0.6912 0.5990 4.2406 19 8 -0.0564 1.4140 5.0181 20 7 0.7477 0.6542 2.9368 21 6 1.5979 -0.3132 2.4950 22 1 -0.3633 0.6020 0.8329 23 1 -0.3634 0.4204 -0.9377 24 1 -0.3634 -1.0223 0.1049 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6769 1.9562 0.8901 28 1 1.8957 -3.5791 -2.6752 29 1 3.2607 -2.0633 0.1323 30 1 4.0872 -3.2294 2.1333 31 1 3.3377 -2.5429 4.3708 32 1 -0.9484 1.0830 5.1911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:19 Heat of formation + Delta-G solvation = 19.072275 kcal Electronic energy + Delta-G solvation = -18489.907857 eV Core-core repulsion = 15611.503267 eV Total energy + Delta-G solvation = -2878.404589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.84971 -38.61226 -37.58970 -35.18009 -34.14009 -31.86730 -29.38781 -28.51736 -26.45211 -25.20456 -23.32708 -22.29947 -21.65431 -19.24367 -19.05720 -17.52742 -16.97573 -16.65208 -15.71872 -15.16798 -14.74184 -14.06104 -13.73881 -13.47690 -12.96483 -12.73698 -12.52243 -12.38767 -11.82385 -11.63329 -11.24606 -11.15729 -10.84306 -10.67869 -10.44347 -10.26565 -10.02052 -9.80386 -9.16359 -9.03456 -8.56884 -8.16152 -7.55857 -6.18758 -4.18262 1.04781 1.78931 2.19425 2.71408 3.26008 3.36774 3.40742 3.80857 4.22872 4.33677 4.89730 5.15627 5.28851 5.48874 5.55824 5.75525 5.87504 6.15267 6.29751 6.33403 6.41747 6.48968 6.67914 6.74696 6.78763 6.87542 6.96101 7.08075 7.20268 7.24274 7.31554 7.49776 7.77307 7.92921 8.45461 8.87185 9.43605 10.92380 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.010228 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.434712 B = 2737.028280 C = 3092.478585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 C -0.116 4.116 4 C -0.511 4.511 5 H 0.081 0.919 6 C 0.079 3.921 7 N -0.892 5.892 8 Si 0.872 3.128 9 H -0.286 1.286 10 H -0.299 1.299 11 H -0.249 1.249 12 C 0.033 3.967 13 C -0.121 4.121 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.014 3.986 17 O -0.236 6.236 18 C 0.381 3.619 19 O -0.413 6.413 20 N -0.440 5.440 21 C 0.016 3.984 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.167 0.833 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 1.954 12.235 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.065 3.935 3 C -0.174 4.174 4 C -0.548 4.548 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.529 5.529 8 Si 0.703 3.297 9 H -0.214 1.214 10 H -0.227 1.227 11 H -0.174 1.174 12 C 0.032 3.968 13 C -0.140 4.140 14 C -0.104 4.104 15 C -0.147 4.147 16 C -0.035 4.035 17 O -0.131 6.131 18 C 0.130 3.870 19 O -0.219 6.219 20 N -0.182 5.182 21 C -0.095 4.095 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.184 0.816 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.736 2.590 11.843 12.246 hybrid contribution -1.024 -1.302 1.258 2.080 sum -2.760 1.288 13.101 13.451 Atomic orbital electron populations 1.22247 0.97165 0.99578 1.00873 1.17646 0.92294 0.93097 0.90459 1.21627 0.99918 0.95680 1.00160 1.20930 1.30359 0.97467 1.06050 0.90103 1.25023 0.95346 0.97144 0.94853 1.69908 1.42812 1.11591 1.28618 0.87351 0.81828 0.77596 0.82920 1.21396 1.22721 1.17398 1.20106 0.91667 0.93070 0.91986 1.21737 0.96851 0.94838 1.00570 1.21171 0.98852 0.99348 0.91071 1.19652 0.99538 0.96924 0.98562 1.20025 1.00688 0.98757 0.84047 1.84372 1.51487 1.41244 1.36013 1.22439 0.92806 0.86686 0.85019 1.84892 1.29159 1.39083 1.68791 1.70972 1.19470 1.21872 1.05912 1.19559 0.99534 0.95418 0.95003 0.92987 0.92659 0.94857 0.93785 0.93033 0.93889 0.92460 0.81590 0.84722 0.85662 0.73001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 7.41 37.16 0.28 -2.92 16 2 C 0.07 1.52 0.59 -156.81 -0.09 1.43 16 3 C -0.12 -2.45 8.29 37.16 0.31 -2.14 16 4 C -0.51 -13.42 7.49 -34.44 -0.26 -13.68 16 5 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 6 C 0.08 2.13 4.07 -17.82 -0.07 2.06 16 7 N -0.89 -25.62 13.96 55.43 0.77 -24.84 16 8 Si 0.87 21.42 22.05 -169.99 -3.75 17.67 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 10 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 11 H -0.25 -5.95 4.46 56.52 0.25 -5.69 16 12 C 0.03 0.73 2.56 -104.31 -0.27 0.46 16 13 C -0.12 -2.56 6.67 -39.60 -0.26 -2.82 16 14 C -0.09 -1.50 10.03 -39.51 -0.40 -1.90 16 15 C -0.13 -2.15 10.06 -39.54 -0.40 -2.55 16 16 C 0.01 0.27 7.42 -38.69 -0.29 -0.02 16 17 O -0.24 -4.18 10.78 -20.52 -0.22 -4.40 16 18 C 0.38 6.39 9.54 52.24 0.50 6.89 16 19 O -0.41 -5.06 13.62 -40.54 -0.55 -5.61 16 20 N -0.44 -8.65 9.39 -12.80 -0.12 -8.77 16 21 C 0.02 0.34 6.03 -84.70 -0.51 -0.17 16 22 H 0.05 1.10 6.66 -51.93 -0.35 0.75 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 24 H 0.03 0.78 2.80 -51.93 -0.15 0.63 16 25 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.87 7.34 -51.93 -0.38 0.48 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.17 3.82 5.45 -52.49 -0.29 3.54 16 30 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.41 2.52 9.06 45.56 0.41 2.94 16 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -31.12 256.77 -4.03 -35.15 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.56 Total: 2.29 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.46 Total: -15.36 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.65 Total: -33.61 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.77 Total: -10.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -3.75 Total: 17.67 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.12 -4.03 -35.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.219 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds