Wall clock time and date at job start Mon Mar 30 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47129 * 2 1 4 4 C 1.50707 * 109.46700 * 240.00428 * 2 1 3 5 5 H 1.08000 * 119.99905 * 122.75751 * 4 2 1 6 6 C 1.37879 * 120.00113 * 302.76020 * 4 2 1 7 7 N 1.31510 * 119.99829 * 184.69098 * 6 4 2 8 8 Si 1.86803 * 119.99967 * 4.68819 * 6 4 2 9 9 H 1.48501 * 109.46812 * 92.73322 * 8 6 4 10 10 H 1.48496 * 109.46962 * 212.73184 * 8 6 4 11 11 H 1.48503 * 109.47141 * 332.73436 * 8 6 4 12 12 C 1.50699 * 109.47228 * 120.00680 * 2 1 3 13 13 C 1.37797 * 120.13109 * 125.97572 * 12 2 1 14 14 C 1.38622 * 120.39282 * 179.97438 * 13 12 2 15 15 C 1.38043 * 120.45958 * 359.82328 * 14 13 12 16 16 C 1.38532 * 119.89138 * 0.39903 * 15 14 13 17 17 O 1.35261 * 133.82104 * 179.89826 * 16 15 14 18 18 C 1.34387 * 108.19103 * 179.71710 * 17 16 15 19 19 O 1.35185 * 124.92645 * 180.02562 * 18 17 16 20 20 N 1.30612 * 110.14268 * 359.97438 * 18 17 16 21 21 C 1.36156 * 108.72081 * 0.02562 * 20 18 17 22 22 H 1.09000 * 109.46803 * 305.85534 * 1 2 3 23 23 H 1.09001 * 109.47272 * 65.85248 * 1 2 3 24 24 H 1.09001 * 109.47248 * 185.85748 * 1 2 3 25 25 H 1.09008 * 109.47097 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47745 * 299.99993 * 3 2 1 27 27 H 1.08998 * 109.46991 * 60.00989 * 3 2 1 28 28 H 0.97004 * 120.00029 * 180.02562 * 7 6 4 29 29 H 1.07993 * 119.80801 * 0.02867 * 13 12 2 30 30 H 1.07993 * 119.76806 * 180.02562 * 14 13 12 31 31 H 1.07998 * 120.05261 * 180.02562 * 15 14 13 32 32 H 0.96701 * 113.99577 * 269.95512 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6894 -0.1994 -1.9187 6 6 1.6529 -2.0126 -1.4780 7 7 2.1630 -2.6631 -2.5009 8 14 0.4143 -2.8530 -0.3603 9 1 -0.9524 -2.6731 -0.9124 10 1 0.7273 -4.3022 -0.2759 11 1 0.4836 -2.2518 0.9958 12 6 2.0324 -0.7105 1.2304 13 6 2.9231 -1.7552 1.1107 14 6 3.3891 -2.4122 2.2388 15 6 2.9701 -2.0266 3.4963 16 6 2.0714 -0.9814 3.6343 17 8 1.4849 -0.3847 4.6970 18 6 0.6912 0.5990 4.2406 19 8 -0.0564 1.4140 5.0181 20 7 0.7477 0.6542 2.9368 21 6 1.5979 -0.3132 2.4950 22 1 -0.3633 0.6020 0.8329 23 1 -0.3634 0.4204 -0.9377 24 1 -0.3634 -1.0223 0.1049 25 1 3.1301 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6769 1.9562 0.8901 28 1 1.8957 -3.5791 -2.6752 29 1 3.2607 -2.0633 0.1323 30 1 4.0872 -3.2294 2.1333 31 1 3.3377 -2.5429 4.3708 32 1 -0.9484 1.0830 5.1911 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989481.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:19 Heat of formation + Delta-G solvation = -6.140812 kcal Electronic energy + Delta-G solvation = -18491.001178 eV Core-core repulsion = 15611.503267 eV Total energy + Delta-G solvation = -2879.497911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.22297 -40.08992 -38.75084 -36.77781 -35.57496 -33.88882 -30.87018 -29.95775 -28.21884 -27.18550 -24.68265 -23.74829 -23.13585 -20.92541 -20.28241 -19.03954 -18.58187 -18.08469 -17.26080 -16.98607 -16.08929 -15.50944 -15.23370 -15.01191 -14.87092 -14.42814 -14.21649 -13.88127 -13.48762 -12.97945 -12.83885 -12.78750 -12.45631 -12.32566 -12.06420 -11.99867 -11.89200 -11.47349 -10.98441 -10.88314 -10.63373 -9.59984 -9.06713 -8.29988 -6.31138 -0.28842 0.30223 0.94014 1.28390 1.35396 1.40221 1.45055 2.30791 2.51733 2.74651 3.03295 3.57529 3.99186 4.14009 4.21715 4.29958 4.40372 4.50177 4.56842 4.81715 4.92221 4.96177 5.04946 5.09364 5.14705 5.19805 5.41747 5.45867 5.50036 5.69446 5.77216 6.00105 6.27244 6.37188 6.54576 6.74976 7.33630 8.85131 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.026700 B = 0.010228 C = 0.009052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.434712 B = 2737.028280 C = 3092.478585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.062 3.938 3 C -0.109 4.109 4 C -0.505 4.505 5 H 0.044 0.956 6 C 0.044 3.956 7 N -0.936 5.936 8 Si 0.922 3.078 9 H -0.293 1.293 10 H -0.300 1.300 11 H -0.234 1.234 12 C 0.001 3.999 13 C -0.137 4.137 14 C -0.085 4.085 15 C -0.107 4.107 16 C 0.001 3.999 17 O -0.231 6.231 18 C 0.407 3.593 19 O -0.403 6.403 20 N -0.475 5.475 21 C 0.003 3.997 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.137 0.863 30 H 0.171 0.829 31 H 0.168 0.832 32 H 0.441 0.559 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 1.791 15.493 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 C -0.167 4.167 4 C -0.542 4.542 5 H 0.063 0.937 6 C -0.154 4.154 7 N -0.575 5.575 8 Si 0.753 3.247 9 H -0.221 1.221 10 H -0.228 1.228 11 H -0.158 1.158 12 C 0.000 4.000 13 C -0.156 4.156 14 C -0.103 4.103 15 C -0.125 4.125 16 C -0.048 4.048 17 O -0.126 6.126 18 C 0.157 3.843 19 O -0.215 6.215 20 N -0.218 5.218 21 C -0.108 4.108 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.188 0.812 31 H 0.186 0.814 32 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -2.331 2.444 15.125 15.498 hybrid contribution -0.836 -1.122 0.357 1.444 sum -3.167 1.321 15.483 15.858 Atomic orbital electron populations 1.22175 0.96775 0.99152 1.01302 1.17589 0.92643 0.93779 0.89825 1.21543 0.99588 0.94921 1.00598 1.21047 1.29118 0.97475 1.06608 0.93744 1.25493 0.96630 0.97598 0.95706 1.70014 1.44750 1.12070 1.30672 0.86532 0.79310 0.76535 0.82351 1.22134 1.22830 1.15831 1.19828 0.93790 0.94455 0.91945 1.21598 0.97607 0.95651 1.00758 1.21484 0.98975 0.99707 0.90111 1.20122 0.97377 0.95438 0.99581 1.20327 1.01323 0.99412 0.83736 1.84404 1.51502 1.41315 1.35422 1.22618 0.91541 0.85332 0.84854 1.84879 1.30818 1.38118 1.67660 1.70937 1.20779 1.22777 1.07334 1.19532 1.00037 0.96214 0.95026 0.91514 0.92977 0.95775 0.94224 0.92927 0.92932 0.92442 0.84494 0.81195 0.81440 0.69416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 7.41 71.98 0.53 -5.59 16 2 C 0.06 2.91 0.59 -53.67 -0.03 2.88 16 3 C -0.11 -4.62 8.29 71.98 0.60 -4.03 16 4 C -0.50 -27.48 7.49 25.60 0.19 -27.29 16 5 H 0.04 2.68 7.99 -2.91 -0.02 2.65 16 6 C 0.04 2.46 4.07 84.66 0.34 2.81 16 7 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 8 Si 0.92 44.71 22.05 68.60 1.51 46.23 16 9 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 10 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 11 H -0.23 -10.81 4.46 99.48 0.44 -10.37 16 12 C 0.00 0.05 2.56 -19.66 -0.05 0.00 16 13 C -0.14 -5.70 6.67 22.26 0.15 -5.55 16 14 C -0.09 -2.71 10.03 22.32 0.22 -2.49 16 15 C -0.11 -3.14 10.06 22.29 0.22 -2.91 16 16 C 0.00 0.05 7.42 22.84 0.17 0.22 16 17 O -0.23 -7.27 10.78 9.26 0.10 -7.17 16 18 C 0.41 12.22 9.54 130.42 1.24 13.46 16 19 O -0.40 -8.18 13.62 -62.38 -0.85 -9.03 16 20 N -0.48 -17.52 9.39 -422.75 -3.97 -21.49 16 21 C 0.00 0.11 6.03 39.28 0.24 0.35 16 22 H 0.07 2.75 6.66 -2.39 -0.02 2.73 16 23 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.02 1.10 2.80 -2.39 -0.01 1.10 16 25 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.05 2.09 7.34 -2.39 -0.02 2.08 16 28 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 29 H 0.14 6.47 5.45 -2.91 -0.02 6.45 16 30 H 0.17 4.10 8.06 -2.91 -0.02 4.07 16 31 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.44 3.34 9.06 -74.06 -0.67 2.67 16 Total: -1.00 -68.32 256.77 1.15 -67.17 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.23 Total: 7.70 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.83 Total: -28.14 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -3.67 Total: -76.75 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.75 Total: -16.20 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.51 Total: 46.23 kcal Total: -68.32 1.15 -67.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989481.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.029 kcal (2) G-P(sol) polarization free energy of solvation -68.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds