Wall clock time and date at job start Mon Mar 30 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46946 * 2 1 4 4 C 1.39465 * 126.25466 * 90.00613 * 3 2 1 5 5 C 1.38612 * 133.35941 * 0.02562 * 4 3 2 6 6 C 1.38128 * 119.82187 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.90444 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47152 * 269.97697 * 7 6 5 9 9 H 1.08006 * 120.00337 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00250 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00178 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99676 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47046 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47001 * 209.99665 * 12 10 8 15 15 H 1.48499 * 109.47189 * 329.99696 * 12 10 8 16 16 C 1.38407 * 120.19002 * 0.02562 * 6 5 4 17 17 C 1.38129 * 120.30876 * 359.97438 * 16 6 5 18 18 C 1.38614 * 119.91545 * 0.26262 * 17 16 6 19 19 O 1.35557 * 132.99245 * 180.40635 * 18 17 16 20 20 C 1.34227 * 109.17760 * 179.54111 * 19 18 17 21 21 O 1.21605 * 125.27485 * 179.73541 * 20 19 18 22 22 H 1.09007 * 109.47195 * 299.99753 * 1 2 3 23 23 H 1.09003 * 109.47143 * 59.99700 * 1 2 3 24 24 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46760 * 240.00410 * 2 1 3 26 26 H 1.08991 * 109.47483 * 120.00386 * 2 1 3 27 27 H 1.07994 * 120.08893 * 359.96755 * 5 4 3 28 28 H 1.08995 * 109.47183 * 29.98061 * 7 6 5 29 29 H 1.08994 * 109.46964 * 149.98053 * 7 6 5 30 30 H 0.96999 * 120.00127 * 180.02562 * 11 10 8 31 31 H 1.07996 * 119.84802 * 179.97438 * 16 6 5 32 32 H 1.08002 * 120.03785 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2933 2.1588 1.1246 5 6 2.2105 1.9230 2.4881 6 6 2.5626 2.9174 3.3798 7 6 2.4739 2.6628 4.8625 8 6 1.1049 3.0518 5.3580 9 1 0.3721 3.4437 4.6681 10 6 0.7874 2.9064 6.6918 11 7 -0.4075 3.2453 7.1241 12 14 2.0546 2.2278 7.8848 13 1 2.8495 3.3467 8.4518 14 1 1.3635 1.5054 8.9829 15 1 2.9579 1.2921 7.1682 16 6 2.9966 4.1469 2.9154 17 6 3.0815 4.3890 1.5582 18 6 2.7257 3.3989 0.6557 19 8 2.7119 3.3443 -0.6987 20 6 2.2841 2.1327 -1.0868 21 8 2.1552 1.7696 -2.2402 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.8716 0.9644 2.8521 28 1 2.6449 1.6047 5.0604 29 1 3.2290 3.2556 5.3787 30 1 -0.6307 3.1434 8.0625 31 1 3.2701 4.9206 3.6175 32 1 3.4204 5.3502 1.2007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259991259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:44 Heat of formation + Delta-G solvation = -26.139531 kcal Electronic energy + Delta-G solvation = -17414.125782 eV Core-core repulsion = 14533.760662 eV Total energy + Delta-G solvation = -2880.365120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.01887 -38.50867 -37.44245 -36.18970 -33.30024 -31.69508 -31.27841 -29.41889 -27.40976 -24.58489 -23.56760 -22.55329 -21.22905 -20.99059 -17.94966 -17.41623 -17.16169 -16.89124 -16.11521 -15.22395 -14.60415 -14.41091 -14.14969 -13.77763 -13.61239 -13.38494 -13.06418 -12.62263 -12.34017 -12.15231 -11.82535 -11.63369 -11.37132 -11.22647 -10.76372 -10.60211 -10.57169 -10.19774 -10.00363 -9.50534 -8.70274 -8.27749 -7.77717 -6.18956 -4.20053 1.40289 1.53314 2.22527 2.60530 3.05149 3.20114 3.29134 3.29405 3.94449 4.30424 4.54922 4.59955 4.96428 5.11274 5.13168 5.19893 5.27267 5.42767 5.55304 5.65029 5.70452 5.77146 6.03107 6.08547 6.24119 6.45781 6.60782 6.65369 6.79041 6.96011 7.27541 7.42501 7.54196 7.77127 8.34824 8.85297 9.40009 10.93597 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.005935 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.315483 B = 4717.009179 C = 5215.740315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.129 3.871 3 N -0.545 5.545 4 C 0.068 3.932 5 C -0.102 4.102 6 C -0.006 4.006 7 C 0.016 3.984 8 C -0.519 4.519 9 H 0.075 0.925 10 C 0.072 3.928 11 N -0.896 5.896 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.264 1.264 16 C -0.107 4.107 17 C -0.079 4.079 18 C 0.004 3.996 19 O -0.241 6.241 20 C 0.632 3.368 21 O -0.505 6.505 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.132 0.868 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.141 0.859 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.184 -4.087 -9.288 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 N -0.277 5.277 4 C -0.029 4.029 5 C -0.123 4.123 6 C -0.007 4.007 7 C -0.021 4.021 8 C -0.557 4.557 9 H 0.093 0.907 10 C -0.130 4.130 11 N -0.534 5.534 12 Si 0.704 3.296 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.189 1.189 16 C -0.125 4.125 17 C -0.098 4.098 18 C -0.042 4.042 19 O -0.147 6.147 20 C 0.388 3.612 21 O -0.391 6.391 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.150 0.850 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.028 -4.182 -9.979 12.385 hybrid contribution 0.345 -0.394 0.669 0.850 sum 6.373 -4.576 -9.310 12.175 Atomic orbital electron populations 1.22203 0.94438 1.03135 1.03430 1.21575 0.95405 0.77742 1.04368 1.45867 1.62115 1.14731 1.04993 1.18544 1.03959 0.90556 0.89838 1.20001 1.03549 1.01450 0.87320 1.20168 0.91356 0.91579 0.97615 1.18839 0.98810 0.97839 0.86656 1.20878 0.96405 1.43925 0.94496 0.90666 1.24985 0.95218 0.94726 0.98117 1.69887 1.20019 1.47685 1.15781 0.86823 0.81886 0.79835 0.81075 1.20021 1.21198 1.18891 1.20947 1.00660 0.97714 0.93208 1.19958 1.01723 0.97210 0.90860 1.18888 1.09069 0.96387 0.79834 1.84901 1.74714 1.33435 1.21604 1.18535 0.78522 0.78766 0.85351 1.91099 1.59029 1.72599 1.16349 0.91299 0.91992 0.90475 0.88909 0.88800 0.85037 0.95015 0.95123 0.92432 0.84145 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.13 1.48 6.75 -4.04 -0.03 1.45 16 3 N -0.54 -8.25 2.81 -119.02 -0.33 -8.58 16 4 C 0.07 1.10 6.84 -83.79 -0.57 0.53 16 5 C -0.10 -1.72 9.68 -39.48 -0.38 -2.10 16 6 C -0.01 -0.11 5.07 -104.60 -0.53 -0.64 16 7 C 0.02 0.33 4.17 -29.03 -0.12 0.21 16 8 C -0.52 -13.49 9.65 -34.44 -0.33 -13.83 16 9 H 0.08 2.16 7.98 -52.48 -0.42 1.74 16 10 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 11 N -0.90 -26.02 13.96 55.43 0.77 -25.24 16 12 Si 0.88 19.84 27.47 -169.99 -4.67 15.17 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 16 C -0.11 -1.71 9.68 -39.56 -0.38 -2.09 16 17 C -0.08 -1.17 10.06 -39.48 -0.40 -1.56 16 18 C 0.00 0.06 7.35 -38.99 -0.29 -0.22 16 19 O -0.24 -4.15 10.72 -21.97 -0.24 -4.38 16 20 C 0.63 10.88 9.07 54.05 0.49 11.37 16 21 O -0.51 -9.55 17.81 -19.01 -0.34 -9.88 16 22 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 29 H 0.03 0.62 7.51 -51.93 -0.39 0.23 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 283.31 15.07 4.27 4.27 Total: -1.00 -30.24 283.31 -6.52 -36.76 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -3.72 Total: -1.54 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.26 Total: -6.57 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.44 Total: -33.82 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.57 Total: -14.27 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.24 -6.52 -36.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.618 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds