Wall clock time and date at job start Mon Mar 30 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46946 * 2 1 4 4 C 1.39465 * 126.25466 * 90.00613 * 3 2 1 5 5 C 1.38612 * 133.35941 * 0.02562 * 4 3 2 6 6 C 1.38128 * 119.82187 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.90444 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47152 * 269.97697 * 7 6 5 9 9 H 1.08006 * 120.00337 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00250 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00178 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99676 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47046 * 89.99863 * 12 10 8 14 14 H 1.48503 * 109.47001 * 209.99665 * 12 10 8 15 15 H 1.48499 * 109.47189 * 329.99696 * 12 10 8 16 16 C 1.38407 * 120.19002 * 0.02562 * 6 5 4 17 17 C 1.38129 * 120.30876 * 359.97438 * 16 6 5 18 18 C 1.38614 * 119.91545 * 0.26262 * 17 16 6 19 19 O 1.35557 * 132.99245 * 180.40635 * 18 17 16 20 20 C 1.34227 * 109.17760 * 179.54111 * 19 18 17 21 21 O 1.21605 * 125.27485 * 179.73541 * 20 19 18 22 22 H 1.09007 * 109.47195 * 299.99753 * 1 2 3 23 23 H 1.09003 * 109.47143 * 59.99700 * 1 2 3 24 24 H 1.09000 * 109.47366 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46760 * 240.00410 * 2 1 3 26 26 H 1.08991 * 109.47483 * 120.00386 * 2 1 3 27 27 H 1.07994 * 120.08893 * 359.96755 * 5 4 3 28 28 H 1.08995 * 109.47183 * 29.98061 * 7 6 5 29 29 H 1.08994 * 109.46964 * 149.98053 * 7 6 5 30 30 H 0.96999 * 120.00127 * 180.02562 * 11 10 8 31 31 H 1.07996 * 119.84802 * 179.97438 * 16 6 5 32 32 H 1.08002 * 120.03785 * 179.97438 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2933 2.1588 1.1246 5 6 2.2105 1.9230 2.4881 6 6 2.5626 2.9174 3.3798 7 6 2.4739 2.6628 4.8625 8 6 1.1049 3.0518 5.3580 9 1 0.3721 3.4437 4.6681 10 6 0.7874 2.9064 6.6918 11 7 -0.4075 3.2453 7.1241 12 14 2.0546 2.2278 7.8848 13 1 2.8495 3.3467 8.4518 14 1 1.3635 1.5054 8.9829 15 1 2.9579 1.2921 7.1682 16 6 2.9966 4.1469 2.9154 17 6 3.0815 4.3890 1.5582 18 6 2.7257 3.3989 0.6557 19 8 2.7119 3.3443 -0.6987 20 6 2.2841 2.1327 -1.0868 21 8 2.1552 1.7696 -2.2402 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.8716 0.9644 2.8521 28 1 2.6449 1.6047 5.0604 29 1 3.2290 3.2556 5.3787 30 1 -0.6307 3.1434 8.0625 31 1 3.2701 4.9206 3.6175 32 1 3.4204 5.3502 1.2007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259991259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:44 Heat of formation + Delta-G solvation = -43.210457 kcal Electronic energy + Delta-G solvation = -17414.866033 eV Core-core repulsion = 14533.760662 eV Total energy + Delta-G solvation = -2881.105371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.31099 -39.84641 -38.76288 -37.43009 -35.14164 -33.02943 -32.64134 -30.73026 -28.99326 -25.66504 -25.20085 -23.83467 -22.77333 -22.13218 -19.24605 -18.91774 -18.70308 -18.44840 -17.44844 -16.41915 -16.27848 -15.82440 -15.35970 -14.96825 -14.82828 -14.71655 -14.45051 -14.27383 -13.69156 -13.47446 -13.31290 -12.96230 -12.59148 -12.41481 -12.32005 -12.05876 -11.91722 -11.73872 -11.60729 -11.35885 -10.73155 -9.58400 -9.10300 -8.23984 -6.29692 0.13353 0.20401 1.01120 1.28909 1.44511 1.46194 1.56625 1.78246 2.41063 2.63879 3.11529 3.35612 3.51204 3.90474 4.06017 4.18532 4.19443 4.31014 4.33503 4.40183 4.64647 4.77522 4.86372 5.00018 5.12120 5.15088 5.17774 5.25967 5.32418 5.54696 5.66089 5.82775 6.13627 6.30320 6.47621 6.78004 7.34261 8.92209 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.005935 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.315483 B = 4717.009179 C = 5215.740315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.537 5.537 4 C 0.064 3.936 5 C -0.102 4.102 6 C -0.030 4.030 7 C 0.021 3.979 8 C -0.518 4.518 9 H 0.031 0.969 10 C 0.009 3.991 11 N -0.950 5.950 12 Si 0.947 3.053 13 H -0.265 1.265 14 H -0.291 1.291 15 H -0.239 1.239 16 C -0.106 4.106 17 C -0.067 4.067 18 C -0.007 4.007 19 O -0.247 6.247 20 C 0.627 3.373 21 O -0.528 6.528 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.023 -4.815 -9.201 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.269 5.269 4 C -0.033 4.033 5 C -0.123 4.123 6 C -0.031 4.031 7 C -0.017 4.017 8 C -0.556 4.556 9 H 0.049 0.951 10 C -0.188 4.188 11 N -0.591 5.591 12 Si 0.770 3.230 13 H -0.190 1.190 14 H -0.217 1.217 15 H -0.162 1.162 16 C -0.125 4.125 17 C -0.085 4.085 18 C -0.053 4.053 19 O -0.153 6.153 20 C 0.383 3.617 21 O -0.415 6.415 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.124 0.876 26 H 0.134 0.866 27 H 0.158 0.842 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.174 0.826 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.881 -4.924 -9.904 13.581 hybrid contribution -0.290 -0.130 0.549 0.635 sum 7.591 -5.054 -9.355 13.065 Atomic orbital electron populations 1.22171 0.94065 1.04588 1.01828 1.21969 0.95719 0.76147 1.06129 1.46061 1.61239 1.15602 1.03972 1.18562 1.03992 0.90889 0.89892 1.20011 1.03235 1.01674 0.87378 1.20052 0.93565 0.93117 0.96358 1.18704 0.95966 0.98312 0.88683 1.21139 0.97964 1.42697 0.93843 0.95108 1.25943 0.97271 0.95224 1.00337 1.70058 1.22689 1.50064 1.16278 0.85707 0.79299 0.79692 0.78281 1.19021 1.21718 1.16168 1.21137 1.00023 0.97247 0.94080 1.20245 1.00216 0.98078 0.89984 1.19252 1.09270 0.97044 0.79703 1.84869 1.74675 1.33698 1.22048 1.18618 0.78676 0.78908 0.85496 1.91075 1.60165 1.73062 1.17212 0.93004 0.93352 0.87536 0.87591 0.86600 0.84207 0.94179 0.93686 0.92505 0.82589 0.81590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.12 2.51 6.75 86.38 0.58 3.09 16 3 N -0.54 -15.59 2.81 -761.05 -2.14 -17.72 16 4 C 0.06 1.99 6.84 38.31 0.26 2.25 16 5 C -0.10 -3.30 9.68 22.33 0.22 -3.08 16 6 C -0.03 -1.04 5.07 -19.85 -0.10 -1.14 16 7 C 0.02 0.83 4.17 29.10 0.12 0.95 16 8 C -0.52 -27.10 9.65 25.60 0.25 -26.85 16 9 H 0.03 1.83 7.98 -2.91 -0.02 1.80 16 10 C 0.01 0.51 5.47 84.66 0.46 0.97 16 11 N -0.95 -56.53 13.96 21.45 0.30 -56.23 16 12 Si 0.95 40.04 27.47 68.60 1.88 41.92 16 13 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 14 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.24 -9.02 6.54 99.48 0.65 -8.37 16 16 C -0.11 -3.19 9.68 22.28 0.22 -2.97 16 17 C -0.07 -1.82 10.06 22.33 0.22 -1.59 16 18 C -0.01 -0.22 7.35 22.65 0.17 -0.06 16 19 O -0.25 -8.24 10.72 8.57 0.09 -8.15 16 20 C 0.63 21.06 9.07 129.79 1.18 22.24 16 21 O -0.53 -19.66 17.81 19.17 0.34 -19.32 16 22 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.11 1.99 8.06 -2.39 -0.02 1.97 16 26 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.04 1.56 7.14 -2.39 -0.02 1.54 16 29 H 0.04 1.70 7.51 -2.39 -0.02 1.68 16 30 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 32 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -66.02 283.31 5.86 -60.15 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.07 Total: 8.28 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.31 Total: -8.94 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.84 Total: -73.95 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: 0.43 Total: -27.47 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.88 Total: 41.92 kcal Total: -66.02 5.86 -60.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259991259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.944 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds