Wall clock time and date at job start Mon Mar 30 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29863 * 126.33150 * 2 1 4 4 O 1.41331 * 109.67483 * 179.97438 * 3 2 1 5 5 C 1.34804 * 109.40721 * 0.02562 * 4 3 2 6 6 N 1.32600 * 133.09383 * 180.28750 * 5 4 3 7 7 C 1.31832 * 121.89882 * 180.14291 * 6 5 4 8 8 C 1.38177 * 121.62766 * 359.53274 * 7 6 5 9 9 C 1.39229 * 119.29034 * 0.22757 * 8 7 6 10 10 N 1.38688 * 121.05471 * 180.02562 * 9 8 7 11 11 C 1.46501 * 120.00408 * 359.97438 * 10 9 8 12 12 C 1.52995 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47329 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99384 * 359.97438 * 13 12 11 15 15 C 1.37868 * 120.00099 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00216 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47092 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47017 * 120.00047 * 17 15 13 20 20 H 1.48505 * 109.47071 * 240.00034 * 17 15 13 21 21 C 1.40367 * 106.90394 * 359.97438 * 5 4 3 22 22 H 1.09004 * 109.46418 * 89.97679 * 1 2 3 23 23 H 1.08994 * 109.47104 * 209.97286 * 1 2 3 24 24 H 1.08991 * 109.47470 * 329.97820 * 1 2 3 25 25 H 1.08001 * 119.18550 * 179.73950 * 7 6 5 26 26 H 1.08003 * 120.35409 * 180.20940 * 8 7 6 27 27 H 0.97008 * 119.99626 * 179.97438 * 10 9 8 28 28 H 1.09006 * 109.46393 * 300.00348 * 11 10 9 29 29 H 1.08998 * 109.47173 * 60.00040 * 11 10 9 30 30 H 1.09006 * 109.46528 * 299.99658 * 12 11 10 31 31 H 1.08998 * 109.47472 * 59.99602 * 12 11 10 32 32 H 0.96995 * 120.00351 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2764 1.0462 0.0000 4 8 3.6304 0.6411 0.0006 5 6 3.6951 -0.7054 0.0004 6 7 4.7058 -1.5638 0.0056 7 6 4.5122 -2.8678 0.0012 8 6 3.2420 -3.4118 0.0005 9 6 2.1378 -2.5638 -0.0003 10 7 0.8467 -3.0703 -0.0004 11 6 0.6281 -4.5189 -0.0004 12 6 -0.8743 -4.8079 -0.0012 13 6 -1.0993 -6.2980 -0.0005 14 1 -0.2550 -6.9715 0.0001 15 6 -2.3828 -6.8014 -0.0006 16 7 -3.4109 -5.9813 -0.0008 17 14 -2.6616 -8.6485 -0.0004 18 1 -1.3511 -9.3469 0.0004 19 1 -3.4278 -9.0334 1.2120 20 1 -3.4275 -9.0336 -1.2130 21 6 2.3732 -1.1775 0.0003 22 1 -0.3632 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5134 24 1 -0.3634 0.8897 0.5141 25 1 5.3675 -3.5272 0.0015 26 1 3.1072 -4.4834 0.0003 27 1 0.0884 -2.4653 -0.0006 28 1 1.0822 -4.9548 -0.8903 29 1 1.0817 -4.9547 0.8897 30 1 -1.3287 -4.3718 0.8885 31 1 -1.3277 -4.3720 -0.8915 32 1 -4.3139 -6.3354 -0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260001409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:58 Heat of formation + Delta-G solvation = 64.800091 kcal Electronic energy + Delta-G solvation = -17033.283924 eV Core-core repulsion = 14189.154993 eV Total energy + Delta-G solvation = -2844.128931 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.80569 -38.82182 -36.66728 -34.49674 -33.30310 -31.16680 -30.34567 -29.05164 -28.48048 -25.05798 -23.74537 -22.74376 -21.09909 -20.38648 -18.09456 -17.40250 -16.86225 -16.25768 -16.09246 -15.28868 -14.56391 -14.47759 -14.12392 -13.78101 -13.68735 -13.46071 -12.88223 -12.86065 -12.54176 -12.40500 -11.65531 -11.51984 -11.15925 -11.10052 -10.75980 -10.60727 -9.93098 -9.84485 -9.53741 -9.39888 -8.96199 -8.60575 -7.72777 -6.25630 -4.30162 0.70491 1.39476 2.08540 2.28747 3.17533 3.25205 3.27956 3.37751 3.77412 3.85136 4.16692 4.28047 4.66926 4.75582 5.04368 5.12119 5.19486 5.22852 5.31902 5.55540 5.65976 5.79933 5.90576 5.95449 5.98846 6.38849 6.46669 7.02735 7.21943 7.36108 7.36960 7.60142 7.71978 7.92375 8.07832 8.75265 9.36193 10.85892 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035782 B = 0.004761 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.324610 B = 5879.938094 C = 6636.512941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.156 3.844 3 N -0.301 5.301 4 O -0.091 6.091 5 C 0.330 3.670 6 N -0.537 5.537 7 C 0.207 3.793 8 C -0.294 4.294 9 C 0.337 3.663 10 N -0.706 5.706 11 C 0.113 3.887 12 C 0.012 3.988 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.330 4.330 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.170 0.830 26 H 0.147 0.853 27 H 0.402 0.598 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 6.422 -0.058 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.023 4.023 3 N -0.051 5.051 4 O -0.093 6.093 5 C 0.146 3.854 6 N -0.263 5.263 7 C 0.049 3.951 8 C -0.321 4.321 9 C 0.215 3.785 10 N -0.329 5.329 11 C -0.009 4.009 12 C -0.026 4.026 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.725 3.275 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.343 4.343 22 H 0.117 0.883 23 H 0.106 0.894 24 H 0.111 0.889 25 H 0.187 0.813 26 H 0.165 0.835 27 H 0.240 0.760 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.996 7.913 -0.050 11.981 hybrid contribution -1.482 -1.910 0.000 2.417 sum 7.515 6.003 -0.050 9.618 Atomic orbital electron populations 1.20583 0.84795 1.04895 1.04883 1.24242 0.97704 0.89721 0.90658 1.80005 0.84168 1.17116 1.23796 1.89150 1.23297 1.15654 1.81248 1.20293 0.89166 0.85869 0.90093 1.66793 1.32085 1.02473 1.24963 1.22483 0.96356 0.88652 0.87579 1.21544 0.91694 1.01139 1.17768 1.17680 0.86985 0.88984 0.84873 1.45588 1.03631 1.09629 1.74014 1.22036 1.01926 0.76188 1.00755 1.19322 0.87214 0.97922 0.98106 1.21002 0.92446 0.90897 1.52110 0.92100 1.24994 0.96037 0.98404 0.94713 1.69948 0.98585 1.34631 1.49814 0.86441 0.78428 0.84844 0.77770 1.19542 1.20841 1.20834 1.20808 0.93877 0.93529 1.26044 0.88252 0.89368 0.88916 0.81271 0.83503 0.76041 0.92009 0.92013 0.95800 0.95776 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.87 36.01 0.36 -0.60 16 2 C 0.16 2.20 7.46 -80.23 -0.60 1.61 16 3 N -0.30 -4.78 12.82 34.84 0.45 -4.34 16 4 O -0.09 -1.59 12.06 7.74 0.09 -1.49 16 5 C 0.33 5.51 8.64 -16.42 -0.14 5.37 16 6 N -0.54 -8.41 10.38 -13.08 -0.14 -8.54 16 7 C 0.21 2.61 11.13 -17.57 -0.20 2.42 16 8 C -0.29 -3.94 9.38 -39.24 -0.37 -4.31 16 9 C 0.34 5.04 6.72 -83.50 -0.56 4.47 16 10 N -0.71 -10.70 5.70 -58.35 -0.33 -11.03 16 11 C 0.11 1.96 4.88 -4.04 -0.02 1.94 16 12 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 13 C -0.53 -13.29 9.11 -34.44 -0.31 -13.60 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 17 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.33 -5.12 6.28 -105.01 -0.66 -5.78 16 22 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.09 0.87 6.00 -51.93 -0.31 0.56 16 24 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.15 1.76 6.89 -52.48 -0.36 1.40 16 27 H 0.40 5.68 5.54 -40.82 -0.23 5.45 16 28 H 0.06 1.05 7.99 -51.93 -0.42 0.63 16 29 H 0.06 1.05 7.99 -51.93 -0.42 0.63 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 280.21 15.07 4.22 4.22 Total: -1.00 -29.65 280.21 -6.12 -35.76 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -3.38 Total: 1.15 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.74 Total: -6.86 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.71 Total: -47.79 kcal Atomic # 8 Polarization: -1.59 SS G_CDS: 0.09 Total: -1.49 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.65 -6.12 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260001409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.563 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds