Wall clock time and date at job start Mon Mar 30 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38942 * 120.10099 * 359.73063 * 3 2 1 5 5 C 1.38175 * 119.75797 * 179.80377 * 4 3 2 6 6 C 1.38001 * 120.43564 * 0.42969 * 5 4 3 7 7 C 1.39371 * 120.25357 * 359.80074 * 6 5 4 8 8 C 1.38117 * 120.09401 * 180.02562 * 3 2 1 9 9 C 1.51123 * 132.86426 * 359.97438 * 8 3 2 10 10 H 1.08995 * 110.51475 * 298.66664 * 9 8 3 11 11 C 1.52996 * 110.51473 * 61.38268 * 9 8 3 12 12 C 1.50698 * 109.47522 * 184.99974 * 11 9 8 13 13 H 1.07990 * 119.99825 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99895 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00345 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46837 * 120.00174 * 16 14 12 19 19 H 1.48496 * 109.47575 * 240.00226 * 16 14 12 20 20 C 1.51398 * 104.05985 * 180.02562 * 9 8 3 21 21 O 1.21290 * 126.45249 * 180.02562 * 20 9 8 22 22 N 1.34372 * 107.10081 * 359.97438 * 20 9 8 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 26 26 H 1.08002 * 120.11842 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.77675 * 180.25938 * 5 4 3 28 28 H 1.08008 * 119.87605 * 179.78259 * 6 5 4 29 29 H 1.09005 * 109.46840 * 305.00063 * 11 9 8 30 30 H 1.09003 * 109.47190 * 64.99281 * 11 9 8 31 31 H 0.96991 * 120.00326 * 180.02562 * 15 14 12 32 32 H 0.97001 * 123.86992 * 180.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3775 -0.0057 5 6 1.9257 3.6049 -0.0015 6 6 3.3037 3.6795 -0.0007 7 6 4.0699 2.5153 0.0001 8 6 3.4251 1.2856 -0.0005 9 6 4.5115 0.2351 -0.0007 10 1 4.4460 -0.3822 0.8952 11 6 4.4194 -0.6313 -1.2583 12 6 5.4318 -1.7445 -1.1768 13 1 6.0768 -1.8257 -0.3144 14 6 5.5347 -2.6594 -2.2032 15 7 4.7496 -2.5602 -3.2536 16 14 6.7902 -4.0388 -2.1025 17 1 7.5452 -3.9290 -0.8284 18 1 6.0917 -5.3484 -2.1521 19 1 7.7314 -3.9362 -3.2465 20 6 5.7968 1.0352 -0.0007 21 8 6.9241 0.5878 -0.0012 22 7 5.4535 2.3343 -0.0012 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2124 2.3250 -0.0105 27 1 1.3394 4.5118 -0.0017 28 1 3.7903 4.6437 -0.0010 29 1 3.4182 -1.0556 -1.3347 30 1 4.6224 -0.0190 -2.1370 31 1 4.8217 -3.2040 -3.9755 32 1 6.0941 3.0627 -0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:17 Heat of formation + Delta-G solvation = -40.111227 kcal Electronic energy + Delta-G solvation = -17752.177707 eV Core-core repulsion = 14871.206728 eV Total energy + Delta-G solvation = -2880.970978 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12424 -39.04568 -37.12712 -34.90167 -33.58290 -31.72126 -29.24049 -28.81651 -27.06929 -25.70355 -22.59981 -21.95558 -21.22743 -19.74054 -18.11168 -16.71594 -16.36146 -15.84745 -15.48170 -15.22035 -15.09472 -14.89422 -14.27378 -13.58198 -13.23801 -12.82759 -12.59558 -12.39193 -12.07234 -11.50839 -11.36136 -11.19711 -11.12189 -10.86601 -10.54734 -10.38372 -10.20503 -9.68144 -9.27254 -8.89371 -8.25520 -7.93161 -7.72924 -5.90381 -3.90564 1.44518 1.62868 3.13754 3.33069 3.40650 3.47374 3.55623 3.63185 4.02061 4.57035 4.69212 4.96964 5.13231 5.23421 5.31218 5.39495 5.47111 5.55199 5.56122 5.64438 5.74116 6.25130 6.31812 6.43966 6.53533 6.65099 6.81379 7.20595 7.31144 7.64323 7.67426 7.74884 8.08587 8.44437 8.62913 9.15243 9.72386 11.21064 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.007821 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.065087 B = 3579.460533 C = 4484.202907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.183 3.817 4 C -0.238 4.238 5 C -0.056 4.056 6 C -0.186 4.186 7 C 0.185 3.815 8 C -0.160 4.160 9 C -0.066 4.066 10 H 0.111 0.889 11 C 0.051 3.949 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.537 3.463 21 O -0.484 6.484 22 N -0.670 5.670 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.041 0.959 30 H 0.016 0.984 31 H 0.258 0.742 32 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 12.068 7.116 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.137 3.863 4 C -0.258 4.258 5 C -0.074 4.074 6 C -0.207 4.207 7 C 0.086 3.914 8 C -0.164 4.164 9 C -0.087 4.087 10 H 0.129 0.871 11 C 0.013 3.987 12 C -0.549 4.549 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.212 1.212 20 C 0.326 3.674 21 O -0.355 6.355 22 N -0.314 5.314 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.706 11.362 6.953 15.914 hybrid contribution 0.672 -0.108 -0.166 0.700 sum -8.035 11.255 6.787 15.404 Atomic orbital electron populations 1.23046 0.78943 1.03923 1.00837 1.86259 1.20760 1.26282 1.87838 1.18051 0.89846 0.84538 0.93896 1.21051 0.99714 0.91901 1.13133 1.20474 0.93183 0.96994 0.96797 1.20151 0.93380 0.95651 1.11526 1.17859 0.83124 0.94177 0.96255 1.19285 0.91737 0.95264 1.10140 1.20881 0.87233 0.95192 1.05405 0.87110 1.18956 0.98933 0.92842 0.87934 1.21289 1.18417 1.10305 1.04849 0.91786 1.24962 0.96032 0.98022 0.95356 1.69981 1.38899 1.36718 1.08236 0.86509 0.81461 0.81784 0.78154 1.19563 1.21156 1.21157 1.20916 0.91430 0.81543 0.73540 1.90752 1.23439 1.74101 1.47218 1.43990 1.05324 1.09894 1.72173 0.92750 0.88299 0.93013 0.85290 0.85532 0.86042 0.94074 0.96531 0.93205 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.82 101.05 0.99 1.31 16 2 O -0.30 -5.14 10.07 -19.44 -0.20 -5.33 16 3 C 0.18 3.09 6.67 -39.37 -0.26 2.82 16 4 C -0.24 -3.13 9.05 -39.34 -0.36 -3.48 16 5 C -0.06 -0.66 10.01 -39.69 -0.40 -1.05 16 6 C -0.19 -2.40 10.07 -39.25 -0.40 -2.80 16 7 C 0.18 3.03 7.11 -83.70 -0.60 2.43 16 8 C -0.16 -3.03 5.61 -104.23 -0.58 -3.61 16 9 C -0.07 -1.47 2.94 -92.38 -0.27 -1.74 16 10 H 0.11 2.43 8.14 -51.93 -0.42 2.01 16 11 C 0.05 1.36 4.49 -27.89 -0.13 1.24 16 12 C -0.51 -15.11 8.39 -34.44 -0.29 -15.40 16 13 H 0.06 1.91 7.32 -52.49 -0.38 1.53 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16 16 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 17 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 C 0.54 11.67 7.90 -10.82 -0.09 11.59 16 21 O -0.48 -12.11 17.05 5.55 0.09 -12.02 16 22 N -0.67 -11.39 5.88 -9.71 -0.06 -11.44 16 23 H 0.05 0.55 7.65 -51.93 -0.40 0.16 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 26 H 0.13 1.32 6.32 -52.49 -0.33 0.99 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 29 H 0.04 1.16 7.71 -51.93 -0.40 0.76 16 30 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.40 5.50 8.96 -40.82 -0.37 5.14 16 LS Contribution 279.14 15.07 4.21 4.21 Total: -1.00 -34.74 279.14 -6.23 -40.97 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.53 Total: -0.20 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.47 Total: -7.09 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.68 Total: -38.42 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.10 Total: -17.35 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -34.74 -6.23 -40.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.857 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds