Wall clock time and date at job start Mon Mar 30 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38942 * 120.10099 * 359.73063 * 3 2 1 5 5 C 1.38175 * 119.75797 * 179.80377 * 4 3 2 6 6 C 1.38001 * 120.43564 * 0.42969 * 5 4 3 7 7 C 1.39371 * 120.25357 * 359.80074 * 6 5 4 8 8 C 1.38117 * 120.09401 * 180.02562 * 3 2 1 9 9 C 1.51123 * 132.86426 * 359.97438 * 8 3 2 10 10 H 1.08995 * 110.51475 * 298.66664 * 9 8 3 11 11 C 1.52996 * 110.51473 * 61.38268 * 9 8 3 12 12 C 1.50698 * 109.47522 * 184.99974 * 11 9 8 13 13 H 1.07990 * 119.99825 * 359.97438 * 12 11 9 14 14 C 1.37878 * 119.99895 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00345 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46837 * 120.00174 * 16 14 12 19 19 H 1.48496 * 109.47575 * 240.00226 * 16 14 12 20 20 C 1.51398 * 104.05985 * 180.02562 * 9 8 3 21 21 O 1.21290 * 126.45249 * 180.02562 * 20 9 8 22 22 N 1.34372 * 107.10081 * 359.97438 * 20 9 8 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 26 26 H 1.08002 * 120.11842 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.77675 * 180.25938 * 5 4 3 28 28 H 1.08008 * 119.87605 * 179.78259 * 6 5 4 29 29 H 1.09005 * 109.46840 * 305.00063 * 11 9 8 30 30 H 1.09003 * 109.47190 * 64.99281 * 11 9 8 31 31 H 0.96991 * 120.00326 * 180.02562 * 15 14 12 32 32 H 0.97001 * 123.86992 * 180.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2912 2.3775 -0.0057 5 6 1.9257 3.6049 -0.0015 6 6 3.3037 3.6795 -0.0007 7 6 4.0699 2.5153 0.0001 8 6 3.4251 1.2856 -0.0005 9 6 4.5115 0.2351 -0.0007 10 1 4.4460 -0.3822 0.8952 11 6 4.4194 -0.6313 -1.2583 12 6 5.4318 -1.7445 -1.1768 13 1 6.0768 -1.8257 -0.3144 14 6 5.5347 -2.6594 -2.2032 15 7 4.7496 -2.5602 -3.2536 16 14 6.7902 -4.0388 -2.1025 17 1 7.5452 -3.9290 -0.8284 18 1 6.0917 -5.3484 -2.1521 19 1 7.7314 -3.9362 -3.2465 20 6 5.7968 1.0352 -0.0007 21 8 6.9241 0.5878 -0.0012 22 7 5.4535 2.3343 -0.0012 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2124 2.3250 -0.0105 27 1 1.3394 4.5118 -0.0017 28 1 3.7903 4.6437 -0.0010 29 1 3.4182 -1.0556 -1.3347 30 1 4.6224 -0.0190 -2.1370 31 1 4.8217 -3.2040 -3.9755 32 1 6.0941 3.0627 -0.0016 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:17 Heat of formation + Delta-G solvation = -65.293123 kcal Electronic energy + Delta-G solvation = -17753.269676 eV Core-core repulsion = 14871.206728 eV Total energy + Delta-G solvation = -2882.062947 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.53393 -40.34015 -38.54272 -36.30207 -35.60461 -33.57932 -30.69692 -30.04848 -28.28450 -27.39602 -24.61265 -23.16181 -22.52219 -21.39762 -19.40230 -18.64550 -17.89802 -17.29689 -16.93548 -16.50510 -16.43033 -16.25466 -16.12565 -15.24176 -14.62083 -14.37523 -13.98313 -13.83535 -13.48180 -13.42290 -12.99580 -12.67203 -12.60436 -12.40437 -12.33192 -12.06756 -11.70079 -11.38308 -11.27657 -10.89526 -10.53009 -9.23677 -8.91394 -8.20900 -6.29575 0.21389 0.50348 1.35376 1.36967 1.50637 1.52809 2.02570 2.40503 2.50280 2.85569 3.11357 3.27924 3.68581 4.09262 4.23251 4.29269 4.44384 4.47365 4.49612 4.52246 4.56976 4.80495 4.88138 5.14464 5.35126 5.37427 5.47055 5.50413 5.60528 5.78337 5.84140 6.01553 6.19142 6.57593 6.81688 7.06770 7.37489 8.90933 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.007821 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.065087 B = 3579.460533 C = 4484.202907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.163 3.837 4 C -0.226 4.226 5 C -0.040 4.040 6 C -0.171 4.171 7 C 0.166 3.834 8 C -0.201 4.201 9 C -0.067 4.067 10 H 0.098 0.902 11 C 0.068 3.932 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.961 3.039 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.278 1.278 20 C 0.534 3.466 21 O -0.530 6.530 22 N -0.650 5.650 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.178 0.822 28 H 0.160 0.840 29 H 0.017 0.983 30 H -0.017 1.017 31 H 0.264 0.736 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 14.356 7.608 19.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.117 3.883 4 C -0.246 4.246 5 C -0.058 4.058 6 C -0.191 4.191 7 C 0.069 3.931 8 C -0.205 4.205 9 C -0.089 4.089 10 H 0.116 0.884 11 C 0.031 3.969 12 C -0.569 4.569 13 H 0.071 0.929 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.785 3.215 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.203 1.203 20 C 0.322 3.678 21 O -0.405 6.405 22 N -0.295 5.295 23 H 0.086 0.914 24 H 0.123 0.877 25 H 0.097 0.903 26 H 0.181 0.819 27 H 0.195 0.805 28 H 0.177 0.823 29 H 0.036 0.964 30 H 0.002 0.998 31 H 0.073 0.927 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.310 13.702 7.452 18.697 hybrid contribution 0.967 -0.724 -0.311 1.247 sum -9.343 12.978 7.141 17.513 Atomic orbital electron populations 1.23361 0.76310 1.05173 1.02747 1.86199 1.23728 1.27394 1.88107 1.18386 0.89464 0.85810 0.94664 1.21502 1.01269 0.90931 1.10849 1.21116 0.92918 0.98200 0.93597 1.20658 0.93872 0.95647 1.08963 1.18169 0.82246 0.94785 0.97882 1.19255 0.92411 0.94789 1.14012 1.20558 0.90007 0.95952 1.02335 0.88387 1.18572 0.96761 0.92434 0.89150 1.21577 1.18977 1.11583 1.04781 0.92854 1.25860 0.98066 1.00609 0.94898 1.70088 1.40271 1.37805 1.08872 0.85461 0.78902 0.78930 0.78163 1.19526 1.19404 1.20323 1.20752 0.90419 0.83262 0.73352 1.90703 1.24664 1.75430 1.49721 1.43558 1.06497 1.08578 1.70857 0.91396 0.87686 0.90276 0.81930 0.80505 0.82259 0.96424 0.99844 0.92721 0.73646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.82 113.37 1.11 1.50 16 2 O -0.34 -11.91 10.07 -92.48 -0.93 -12.84 16 3 C 0.16 5.39 6.67 22.41 0.15 5.54 16 4 C -0.23 -5.07 9.05 22.42 0.20 -4.87 16 5 C -0.04 -0.72 10.01 22.20 0.22 -0.50 16 6 C -0.17 -3.68 10.07 22.49 0.23 -3.45 16 7 C 0.17 5.26 7.11 38.34 0.27 5.53 16 8 C -0.20 -7.73 5.61 -19.61 -0.11 -7.84 16 9 C -0.07 -3.18 2.94 -11.93 -0.04 -3.22 16 10 H 0.10 4.70 8.14 -2.39 -0.02 4.68 16 11 C 0.07 3.93 4.49 29.85 0.13 4.06 16 12 C -0.53 -33.15 8.39 25.60 0.21 -32.93 16 13 H 0.05 3.37 7.32 -2.92 -0.02 3.35 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -59.16 13.29 21.45 0.28 -58.87 16 16 Si 0.96 48.18 29.54 68.60 2.03 50.21 16 17 H -0.27 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 20 C 0.53 24.33 7.90 87.94 0.69 25.02 16 21 O -0.53 -27.94 17.05 -3.06 -0.05 -27.99 16 22 N -0.65 -22.09 5.88 -303.23 -1.78 -23.87 16 23 H 0.07 1.24 7.65 -2.39 -0.02 1.22 16 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.08 1.23 7.68 -2.39 -0.02 1.21 16 26 H 0.16 2.50 6.32 -2.91 -0.02 2.48 16 27 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 28 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.02 1.07 7.71 -2.38 -0.02 1.05 16 30 H -0.02 -1.06 8.12 -2.39 -0.02 -1.08 16 31 H 0.26 15.64 8.31 -92.72 -0.77 14.87 16 32 H 0.42 11.10 8.96 -92.71 -0.83 10.27 16 Total: -1.00 -80.98 279.14 3.41 -77.57 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 0.32 Total: 6.29 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 3.55 Total: -10.49 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -1.50 Total: -82.75 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -0.98 Total: -40.83 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -80.98 3.41 -77.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.279 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds