Wall clock time and date at job start Mon Mar 30 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35894 * 117.00188 * 2 1 4 4 C 1.38948 * 120.09719 * 359.72275 * 3 2 1 5 5 C 1.38169 * 119.76028 * 180.17033 * 4 3 2 6 6 C 1.38006 * 120.43825 * 0.16938 * 5 4 3 7 7 C 1.39373 * 120.24841 * 359.87377 * 6 5 4 8 8 C 1.38125 * 120.10393 * 179.97438 * 3 2 1 9 9 C 1.51131 * 132.85837 * 359.71963 * 8 3 2 10 10 H 1.09003 * 110.50493 * 61.22094 * 9 8 3 11 11 C 1.52996 * 110.51353 * 298.64868 * 9 8 3 12 12 C 1.50693 * 109.46995 * 175.00027 * 11 9 8 13 13 H 1.08004 * 120.00527 * 359.97438 * 12 11 9 14 14 C 1.37883 * 120.00008 * 179.97438 * 12 11 9 15 15 N 1.31508 * 119.99975 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99949 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47438 * 59.99825 * 16 14 12 18 18 H 1.48499 * 109.47033 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47126 * 299.99710 * 16 14 12 20 20 C 1.51388 * 104.05719 * 180.02562 * 9 8 3 21 21 O 1.21288 * 126.44982 * 179.97438 * 20 9 8 22 22 N 1.34368 * 107.10681 * 0.02562 * 20 9 8 23 23 H 1.08997 * 109.47288 * 300.00027 * 1 2 3 24 24 H 1.08998 * 109.46776 * 60.00209 * 1 2 3 25 25 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.11676 * 0.25857 * 4 3 2 27 27 H 1.08002 * 119.78227 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.87837 * 179.89363 * 6 5 4 29 29 H 1.09005 * 109.47073 * 294.99999 * 11 9 8 30 30 H 1.09004 * 109.47275 * 54.99770 * 11 9 8 31 31 H 0.97005 * 120.00254 * 179.97438 * 15 14 12 32 32 H 0.97005 * 123.87846 * 179.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3774 -0.0058 5 6 1.9258 3.6048 -0.0093 6 6 3.3038 3.6794 -0.0106 7 6 4.0700 2.5151 -0.0058 8 6 3.4252 1.2856 0.0005 9 6 4.5116 0.2350 0.0066 10 1 4.4450 -0.3883 -0.8851 11 6 4.4186 -0.6252 1.2684 12 6 5.4311 -1.7387 1.1930 13 1 6.0762 -1.8247 0.3310 14 6 5.5340 -2.6480 2.2244 15 7 4.7490 -2.5431 3.2743 16 14 6.7896 -4.0279 2.1312 17 1 8.1534 -3.4500 2.0250 18 1 6.7001 -4.8622 3.3565 19 1 6.5138 -4.8683 0.9384 20 6 5.7968 1.0350 0.0040 21 8 6.9242 0.5876 0.0077 22 7 5.4537 2.3341 -0.0019 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2126 2.3250 -0.0061 27 1 1.3395 4.5118 -0.0134 28 1 3.7904 4.6435 -0.0151 29 1 4.6212 -0.0086 2.1442 30 1 3.4174 -1.0490 1.3463 31 1 4.8211 -3.1829 3.9998 32 1 6.0942 3.0626 -0.0043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:20 Heat of formation + Delta-G solvation = -65.206001 kcal Electronic energy + Delta-G solvation = -17752.933667 eV Core-core repulsion = 14870.874498 eV Total energy + Delta-G solvation = -2882.059170 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.53381 -40.34141 -38.54356 -36.30210 -35.60397 -33.57934 -30.69676 -30.04896 -28.28364 -27.39423 -24.60943 -23.16171 -22.52221 -21.39718 -19.40249 -18.63967 -17.89756 -17.29830 -16.93084 -16.50790 -16.43249 -16.25814 -16.12754 -15.24463 -14.60802 -14.37259 -13.98746 -13.83400 -13.48008 -13.42529 -12.98657 -12.67282 -12.59389 -12.41691 -12.33102 -12.06106 -11.70819 -11.38459 -11.28842 -10.89628 -10.52745 -9.23666 -8.91423 -8.20567 -6.29421 0.21398 0.50345 1.35492 1.40489 1.48007 1.52047 2.02530 2.40569 2.50253 2.85571 3.11665 3.27975 3.68513 4.09272 4.23260 4.29242 4.44456 4.47349 4.49672 4.52120 4.56947 4.80471 4.88217 5.14455 5.35105 5.37181 5.47023 5.50415 5.60428 5.78115 5.84140 6.01525 6.19168 6.57592 6.81305 7.06748 7.37469 8.90885 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.007819 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.887188 B = 3580.307499 C = 4484.225974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.163 3.837 4 C -0.226 4.226 5 C -0.040 4.040 6 C -0.171 4.171 7 C 0.166 3.834 8 C -0.201 4.201 9 C -0.067 4.067 10 H 0.099 0.901 11 C 0.069 3.931 12 C -0.534 4.534 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.960 3.040 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.264 1.264 20 C 0.534 3.466 21 O -0.530 6.530 22 N -0.650 5.650 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.163 0.837 27 H 0.178 0.822 28 H 0.160 0.840 29 H -0.017 1.017 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 14.283 -7.707 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.254 6.254 3 C 0.117 3.883 4 C -0.246 4.246 5 C -0.058 4.058 6 C -0.191 4.191 7 C 0.069 3.931 8 C -0.205 4.205 9 C -0.089 4.089 10 H 0.116 0.884 11 C 0.031 3.969 12 C -0.572 4.572 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.785 3.215 17 H -0.203 1.203 18 H -0.200 1.200 19 H -0.188 1.188 20 C 0.322 3.678 21 O -0.405 6.405 22 N -0.295 5.295 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.181 0.819 27 H 0.195 0.805 28 H 0.177 0.823 29 H 0.001 0.999 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -10.324 13.627 -7.542 18.686 hybrid contribution 0.979 -0.713 0.306 1.250 sum -9.345 12.914 -7.236 17.506 Atomic orbital electron populations 1.23362 0.76303 1.05178 1.02747 1.86195 1.23731 1.27400 1.88101 1.18388 0.89464 0.85813 0.94654 1.21500 1.01267 0.90928 1.10857 1.21118 0.92917 0.98203 0.93595 1.20658 0.93872 0.95644 1.08968 1.18170 0.82242 0.94787 0.97882 1.19256 0.92412 0.94799 1.14006 1.20559 0.90004 0.95956 1.02347 0.88354 1.18562 0.96731 0.92448 0.89110 1.21525 1.19096 1.11862 1.04674 0.92831 1.25858 0.98044 1.00586 0.94886 1.70076 1.40258 1.38014 1.08662 0.85576 0.79102 0.78808 0.78029 1.20291 1.19968 1.18849 1.20742 0.90410 0.83265 0.73348 1.90703 1.24671 1.75438 1.49717 1.43561 1.06500 1.08578 1.70859 0.91406 0.90266 0.87678 0.81928 0.80504 0.82261 0.99880 0.96452 0.92701 0.73646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.82 113.37 1.11 1.50 16 2 O -0.34 -11.91 10.08 -92.36 -0.93 -12.84 16 3 C 0.16 5.40 6.67 22.41 0.15 5.55 16 4 C -0.23 -5.07 9.05 22.42 0.20 -4.87 16 5 C -0.04 -0.72 10.01 22.20 0.22 -0.50 16 6 C -0.17 -3.68 10.07 22.49 0.23 -3.45 16 7 C 0.17 5.26 7.11 38.33 0.27 5.54 16 8 C -0.20 -7.74 5.61 -19.61 -0.11 -7.85 16 9 C -0.07 -3.19 2.94 -11.93 -0.04 -3.23 16 10 H 0.10 4.71 8.14 -2.39 -0.02 4.70 16 11 C 0.07 3.97 4.49 29.84 0.13 4.10 16 12 C -0.53 -33.30 8.39 25.60 0.21 -33.09 16 13 H 0.05 3.37 7.33 -2.91 -0.02 3.34 16 14 C 0.00 0.24 5.46 84.66 0.46 0.70 16 15 N -0.93 -59.22 13.29 21.45 0.28 -58.93 16 16 Si 0.96 48.14 29.54 68.60 2.03 50.16 16 17 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.53 24.35 7.90 87.94 0.69 25.04 16 21 O -0.53 -27.97 17.05 -3.05 -0.05 -28.02 16 22 N -0.65 -22.11 5.88 -303.25 -1.78 -23.89 16 23 H 0.07 1.24 7.67 -2.39 -0.02 1.22 16 24 H 0.08 1.23 7.66 -2.39 -0.02 1.21 16 25 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.16 2.50 6.32 -2.91 -0.02 2.48 16 27 H 0.18 1.54 8.06 -2.91 -0.02 1.51 16 28 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 29 H -0.02 -1.08 8.12 -2.38 -0.02 -1.10 16 30 H 0.02 1.05 7.72 -2.38 -0.02 1.03 16 31 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 32 H 0.42 11.11 8.96 -92.70 -0.83 10.28 16 Total: -1.00 -80.96 279.16 3.41 -77.55 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.32 Total: 6.51 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 3.55 Total: -10.55 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.50 Total: -82.82 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.98 Total: -40.86 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.16 kcal Total: -80.96 3.41 -77.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.346 kcal (2) G-P(sol) polarization free energy of solvation -80.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds