Wall clock time and date at job start Mon Mar 30 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46992 * 2 1 4 4 N 1.46497 * 109.47471 * 239.99652 * 2 1 3 5 5 C 1.38877 * 126.16635 * 239.71474 * 4 2 1 6 6 C 1.39286 * 133.07845 * 0.73490 * 5 4 2 7 7 C 1.36321 * 120.25462 * 179.59291 * 6 5 4 8 8 C 1.40949 * 120.09184 * 359.71853 * 7 6 5 9 9 C 1.41197 * 120.10252 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99910 * 155.02206 * 9 8 7 11 11 C 1.39884 * 119.99924 * 335.02152 * 9 8 7 12 12 N 1.30886 * 119.99629 * 342.10602 * 11 9 8 13 13 Si 1.86801 * 119.99751 * 162.10878 * 11 9 8 14 14 H 1.48494 * 109.47141 * 94.65104 * 13 11 9 15 15 H 1.48503 * 109.46702 * 214.64914 * 13 11 9 16 16 H 1.48496 * 109.47175 * 334.64650 * 13 11 9 17 17 C 1.40731 * 119.79206 * 359.97438 * 8 7 6 18 18 C 1.37846 * 119.58427 * 0.02562 * 17 8 7 19 19 O 1.35607 * 132.91654 * 179.97438 * 18 17 8 20 20 C 1.34246 * 109.04433 * 180.02562 * 19 18 17 21 21 O 1.21581 * 125.22137 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.46785 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47094 * 60.00551 * 1 2 3 24 24 H 1.08999 * 109.47288 * 299.99727 * 1 2 3 25 25 H 1.08996 * 109.47094 * 119.99449 * 2 1 3 26 26 H 1.08997 * 109.47297 * 59.99375 * 3 2 1 27 27 H 1.08994 * 109.47218 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47184 * 299.99702 * 3 2 1 29 29 H 1.08002 * 119.86866 * 359.28206 * 6 5 4 30 30 H 1.07998 * 119.95643 * 179.68506 * 7 6 5 31 31 H 0.96998 * 119.99142 * 180.02562 * 12 11 9 32 32 H 1.08003 * 120.20704 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.8247 -1.8212 -1.2178 6 6 3.3780 -2.6145 -0.2155 7 6 4.1426 -3.6957 -0.5389 8 6 4.3722 -4.0199 -1.8913 9 6 5.1646 -5.1395 -2.2265 10 1 5.0290 -5.6314 -3.1784 11 6 6.1251 -5.6114 -1.3258 12 7 6.5407 -4.8438 -0.3505 13 14 6.8147 -7.3371 -1.5150 14 1 8.0768 -7.2831 -2.2955 15 1 7.0870 -7.9112 -0.1728 16 1 5.8285 -8.1890 -2.2269 17 6 3.8093 -3.2241 -2.9064 18 6 3.0379 -2.1333 -2.5669 19 8 2.3802 -1.2027 -3.3021 20 6 1.7709 -0.3402 -2.4732 21 8 1.0990 0.6113 -2.8216 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.2048 -2.3690 0.8218 30 1 4.5735 -4.3046 0.2421 31 1 7.2070 -5.1710 0.2738 32 1 3.9805 -3.4666 -3.9448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260005237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:27 Heat of formation + Delta-G solvation = -36.376405 kcal Electronic energy + Delta-G solvation = -17720.534244 eV Core-core repulsion = 14839.725220 eV Total energy + Delta-G solvation = -2880.809024 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.19190 -37.64792 -36.96167 -35.84016 -33.59180 -32.03614 -29.68303 -28.58509 -27.11325 -25.09912 -23.45616 -22.25188 -21.20842 -19.57559 -18.13156 -17.08469 -16.44509 -16.04384 -15.70812 -15.17081 -14.43441 -14.02413 -13.49179 -13.47826 -12.97166 -12.84936 -12.52933 -12.40732 -11.99293 -11.81706 -11.56199 -11.36141 -11.28895 -11.18614 -11.01127 -10.79256 -10.42895 -9.93725 -9.76989 -9.72155 -9.10685 -7.69031 -7.18221 -7.02438 -4.57586 2.36638 2.53213 2.94977 2.95681 2.96663 3.03244 3.30927 3.73514 3.92341 4.29952 4.85549 5.15589 5.24033 5.33247 5.51123 5.65598 5.66310 5.82722 5.92707 6.13355 6.19044 6.32878 6.42188 6.46409 6.69397 6.86809 6.91734 7.06332 7.33360 7.45909 7.67816 7.79453 8.12767 8.31688 8.51908 8.58185 8.60804 9.91053 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.043011 B = 0.005866 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.843817 B = 4772.378523 C = 5172.755219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.163 3.837 3 C -0.168 4.168 4 N -0.528 5.528 5 C -0.071 4.071 6 C -0.078 4.078 7 C -0.139 4.139 8 C 0.124 3.876 9 C -0.447 4.447 10 H 0.086 0.914 11 C 0.075 3.925 12 N -0.785 5.785 13 Si 0.914 3.086 14 H -0.268 1.268 15 H -0.274 1.274 16 H -0.258 1.258 17 C -0.206 4.206 18 C 0.068 3.932 19 O -0.253 6.253 20 C 0.622 3.378 21 O -0.531 6.531 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.286 0.714 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 2.246 4.530 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 C -0.226 4.226 4 N -0.262 5.262 5 C -0.166 4.166 6 C -0.099 4.099 7 C -0.159 4.159 8 C 0.121 3.879 9 C -0.475 4.475 10 H 0.104 0.896 11 C -0.144 4.144 12 N -0.409 5.409 13 Si 0.738 3.262 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.182 1.182 17 C -0.227 4.227 18 C 0.023 3.977 19 O -0.159 6.159 20 C 0.378 3.622 21 O -0.420 6.420 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.810 2.816 4.340 6.425 hybrid contribution 0.423 -0.611 0.083 0.748 sum -3.387 2.204 4.423 5.991 Atomic orbital electron populations 1.22194 0.94416 1.02713 1.03185 1.20916 0.94491 0.92954 0.85508 1.22198 1.01782 0.95428 1.03171 1.45343 1.47626 1.26987 1.06196 1.18064 1.08130 0.95177 0.95210 1.19415 0.99523 0.95618 0.95305 1.20998 0.99715 0.97760 0.97421 1.17312 0.89548 0.90741 0.90311 1.19548 1.14885 1.10081 1.03014 0.89628 1.25977 0.95413 0.99220 0.93809 1.69820 1.22750 1.35755 1.12567 0.86188 0.79730 0.81419 0.78890 1.19332 1.19841 1.18150 1.19853 1.07489 0.95821 0.99537 1.18907 0.99129 0.92888 0.86821 1.84853 1.58604 1.36875 1.35537 1.18490 0.81145 0.82903 0.79661 1.90981 1.43574 1.27859 1.79613 0.92187 0.90961 0.91220 0.88745 0.91223 0.92139 0.90961 0.88196 0.84998 0.90345 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.23 37.16 0.34 -1.96 16 2 C 0.16 2.52 3.51 -67.93 -0.24 2.28 16 3 C -0.17 -2.35 9.23 37.16 0.34 -2.01 16 4 N -0.53 -10.54 2.66 -111.69 -0.30 -10.83 16 5 C -0.07 -1.55 6.85 -83.58 -0.57 -2.12 16 6 C -0.08 -1.65 9.78 -39.88 -0.39 -2.04 16 7 C -0.14 -3.21 8.62 -39.25 -0.34 -3.55 16 8 C 0.12 3.02 5.57 -106.81 -0.59 2.42 16 9 C -0.45 -10.66 9.03 -37.84 -0.34 -11.00 16 10 H 0.09 1.95 7.91 -52.49 -0.41 1.54 16 11 C 0.08 1.69 5.13 -17.34 -0.09 1.60 16 12 N -0.78 -18.14 10.98 55.54 0.61 -17.53 16 13 Si 0.91 16.81 29.60 -169.99 -5.03 11.78 16 14 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 15 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 16 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 17 C -0.21 -4.87 9.81 -38.78 -0.38 -5.25 16 18 C 0.07 1.59 7.34 -39.02 -0.29 1.30 16 19 O -0.25 -5.93 10.73 -22.18 -0.24 -6.17 16 20 C 0.62 13.80 8.48 54.03 0.46 14.26 16 21 O -0.53 -12.14 15.60 -18.99 -0.30 -12.44 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.13 6.99 -51.93 -0.36 0.76 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.09 1.32 7.49 -51.93 -0.39 0.93 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.14 6.98 -51.93 -0.36 0.78 16 29 H 0.10 1.82 7.64 -52.49 -0.40 1.42 16 30 H 0.13 3.06 6.17 -52.49 -0.32 2.74 16 31 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 32 H 0.11 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -26.44 275.55 -6.69 -33.13 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.50 Total: 3.98 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.09 Total: -6.06 kcal Atomic # 7 Polarization: -28.68 SS G_CDS: 0.31 Total: -28.37 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.53 Total: -18.61 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.44 -6.69 -33.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.244 kcal (2) G-P(sol) polarization free energy of solvation -26.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds