Wall clock time and date at job start Mon Mar 30 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46992 * 2 1 4 4 N 1.46497 * 109.47471 * 239.99652 * 2 1 3 5 5 C 1.38877 * 126.16635 * 239.71474 * 4 2 1 6 6 C 1.39286 * 133.07845 * 0.73490 * 5 4 2 7 7 C 1.36321 * 120.25462 * 179.59291 * 6 5 4 8 8 C 1.40949 * 120.09184 * 359.71853 * 7 6 5 9 9 C 1.41197 * 120.10252 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99910 * 155.02206 * 9 8 7 11 11 C 1.39884 * 119.99924 * 335.02152 * 9 8 7 12 12 N 1.30886 * 119.99629 * 342.10602 * 11 9 8 13 13 Si 1.86801 * 119.99751 * 162.10878 * 11 9 8 14 14 H 1.48494 * 109.47141 * 94.65104 * 13 11 9 15 15 H 1.48503 * 109.46702 * 214.64914 * 13 11 9 16 16 H 1.48496 * 109.47175 * 334.64650 * 13 11 9 17 17 C 1.40731 * 119.79206 * 359.97438 * 8 7 6 18 18 C 1.37846 * 119.58427 * 0.02562 * 17 8 7 19 19 O 1.35607 * 132.91654 * 179.97438 * 18 17 8 20 20 C 1.34246 * 109.04433 * 180.02562 * 19 18 17 21 21 O 1.21581 * 125.22137 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.46785 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47094 * 60.00551 * 1 2 3 24 24 H 1.08999 * 109.47288 * 299.99727 * 1 2 3 25 25 H 1.08996 * 109.47094 * 119.99449 * 2 1 3 26 26 H 1.08997 * 109.47297 * 59.99375 * 3 2 1 27 27 H 1.08994 * 109.47218 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47184 * 299.99702 * 3 2 1 29 29 H 1.08002 * 119.86866 * 359.28206 * 6 5 4 30 30 H 1.07998 * 119.95643 * 179.68506 * 7 6 5 31 31 H 0.96998 * 119.99142 * 180.02562 * 12 11 9 32 32 H 1.08003 * 120.20704 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.8247 -1.8212 -1.2178 6 6 3.3780 -2.6145 -0.2155 7 6 4.1426 -3.6957 -0.5389 8 6 4.3722 -4.0199 -1.8913 9 6 5.1646 -5.1395 -2.2265 10 1 5.0290 -5.6314 -3.1784 11 6 6.1251 -5.6114 -1.3258 12 7 6.5407 -4.8438 -0.3505 13 14 6.8147 -7.3371 -1.5150 14 1 8.0768 -7.2831 -2.2955 15 1 7.0870 -7.9112 -0.1728 16 1 5.8285 -8.1890 -2.2269 17 6 3.8093 -3.2241 -2.9064 18 6 3.0379 -2.1333 -2.5669 19 8 2.3802 -1.2027 -3.3021 20 6 1.7709 -0.3402 -2.4732 21 8 1.0990 0.6113 -2.8216 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 3.2048 -2.3690 0.8218 30 1 4.5735 -4.3046 0.2421 31 1 7.2070 -5.1710 0.2738 32 1 3.9805 -3.4666 -3.9448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260005237.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:27 Heat of formation + Delta-G solvation = -49.314880 kcal Electronic energy + Delta-G solvation = -17721.095299 eV Core-core repulsion = 14839.725220 eV Total energy + Delta-G solvation = -2881.370079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.92296 -39.37035 -38.61175 -37.47073 -35.28306 -33.51721 -31.42615 -30.35195 -28.20649 -26.85376 -24.94432 -24.02780 -22.94458 -21.10487 -19.81889 -18.76068 -18.18593 -17.73504 -17.40797 -16.78261 -15.99825 -15.34237 -15.17342 -14.76419 -14.61545 -14.53601 -14.21783 -13.86909 -13.44535 -13.15667 -12.95387 -12.87705 -12.76379 -12.69153 -12.46439 -12.27444 -11.96172 -11.53708 -11.43093 -11.39660 -10.78665 -9.46323 -8.94787 -8.72418 -6.37950 0.61825 0.74375 1.37831 1.44807 1.47547 1.58603 1.62124 2.14205 2.25973 2.58253 3.51136 3.61785 3.81223 4.01267 4.13847 4.30505 4.40173 4.66544 4.71577 4.76446 4.81642 4.85779 4.93018 5.10146 5.16391 5.22448 5.27839 5.35877 5.59711 5.72915 5.89426 6.01174 6.36294 6.53581 6.79805 6.80622 6.85357 8.23738 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.043011 B = 0.005866 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.843817 B = 4772.378523 C = 5172.755219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.517 5.517 5 C -0.068 4.068 6 C -0.067 4.067 7 C -0.150 4.150 8 C 0.102 3.898 9 C -0.476 4.476 10 H 0.085 0.915 11 C 0.042 3.958 12 N -0.808 5.808 13 Si 0.985 3.015 14 H -0.265 1.265 15 H -0.263 1.263 16 H -0.259 1.259 17 C -0.224 4.224 18 C 0.048 3.952 19 O -0.269 6.269 20 C 0.612 3.388 21 O -0.544 6.544 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.296 0.704 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 1.981 6.519 7.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.250 5.250 5 C -0.164 4.164 6 C -0.088 4.088 7 C -0.170 4.170 8 C 0.099 3.901 9 C -0.504 4.504 10 H 0.103 0.897 11 C -0.175 4.175 12 N -0.433 5.433 13 Si 0.806 3.194 14 H -0.190 1.190 15 H -0.187 1.187 16 H -0.182 1.182 17 C -0.245 4.245 18 C 0.003 3.997 19 O -0.175 6.175 20 C 0.368 3.632 21 O -0.434 6.434 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.127 0.873 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.800 2.577 6.354 7.839 hybrid contribution 0.398 -0.459 -0.513 0.796 sum -3.401 2.118 5.841 7.083 Atomic orbital electron populations 1.22160 0.92936 1.02687 1.03991 1.21497 0.95789 0.93682 0.84330 1.22168 1.01246 0.94480 1.04013 1.45615 1.46548 1.26208 1.06619 1.18224 1.07891 0.95598 0.94683 1.19657 0.97962 0.94316 0.96836 1.21036 1.00490 0.98658 0.96810 1.17622 0.90098 0.91246 0.91135 1.19808 1.15979 1.10752 1.03865 0.89730 1.26737 0.95084 1.02644 0.93080 1.69830 1.23096 1.37328 1.13032 0.85128 0.78764 0.76380 0.79172 1.19019 1.18694 1.18224 1.19932 1.08428 0.96440 0.99685 1.19115 0.99573 0.93085 0.87949 1.84804 1.58839 1.37212 1.36619 1.18650 0.81391 0.82863 0.80307 1.90961 1.44206 1.28296 1.79902 0.92637 0.93213 0.87273 0.86393 0.87241 0.92909 0.93187 0.84608 0.85231 0.89308 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.23 71.98 0.66 -3.32 16 2 C 0.15 4.14 3.51 44.99 0.16 4.30 16 3 C -0.16 -4.11 9.23 71.98 0.66 -3.45 16 4 N -0.52 -20.07 2.66 -737.92 -1.96 -22.03 16 5 C -0.07 -2.93 6.85 38.73 0.27 -2.67 16 6 C -0.07 -2.74 9.78 22.07 0.22 -2.53 16 7 C -0.15 -6.87 8.62 22.49 0.19 -6.68 16 8 C 0.10 5.05 5.57 -21.28 -0.12 4.93 16 9 C -0.48 -23.01 9.03 23.40 0.21 -22.79 16 10 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 11 C 0.04 1.87 5.13 85.23 0.44 2.31 16 12 N -0.81 -36.84 10.98 21.82 0.24 -36.60 16 13 Si 0.99 33.65 29.60 68.60 2.03 35.68 16 14 H -0.27 -8.90 7.11 99.48 0.71 -8.20 16 15 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 16 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 17 C -0.22 -10.91 9.81 22.79 0.22 -10.68 16 18 C 0.05 2.28 7.34 22.63 0.17 2.45 16 19 O -0.27 -12.88 10.73 7.85 0.08 -12.79 16 20 C 0.61 27.28 8.48 129.80 1.10 28.38 16 21 O -0.54 -24.99 15.60 19.25 0.30 -24.69 16 22 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 23 H 0.05 1.47 6.99 -2.39 -0.02 1.46 16 24 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.12 2.82 7.49 -2.39 -0.02 2.80 16 26 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.51 6.98 -2.39 -0.02 1.49 16 29 H 0.14 4.47 7.64 -2.91 -0.02 4.45 16 30 H 0.13 5.95 6.17 -2.91 -0.02 5.94 16 31 H 0.30 12.01 8.30 -92.71 -0.77 11.24 16 32 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -57.28 275.55 6.01 -51.28 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 1.14 Total: 18.92 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 4.18 Total: -9.75 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -1.72 Total: -58.64 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: 0.38 Total: -37.49 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Total: -57.28 6.01 -51.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260005237.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.961 kcal (2) G-P(sol) polarization free energy of solvation -57.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds