Wall clock time and date at job start Mon Mar 30 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34240 * 125.03796 * 2 1 4 4 C 1.46483 * 107.01109 * 180.26561 * 3 2 1 5 5 C 1.39673 * 133.97144 * 179.75341 * 4 3 2 6 6 C 1.37796 * 119.62815 * 180.02562 * 5 4 3 7 7 F 1.35102 * 119.83117 * 179.97438 * 6 5 4 8 8 C 1.39026 * 120.33179 * 359.96164 * 6 5 4 9 9 C 1.50704 * 119.67435 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47268 * 280.02192 * 9 8 6 11 11 C 1.50694 * 109.47259 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00304 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99653 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47349 * 60.00294 * 15 13 11 17 17 H 1.48505 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47501 * 299.99769 * 15 13 11 19 19 C 1.37713 * 120.64976 * 0.02562 * 8 6 5 20 20 C 1.39090 * 119.95597 * 0.02562 * 19 8 6 21 21 N 1.36813 * 125.03151 * 179.80037 * 2 1 3 22 22 H 0.97001 * 125.07254 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47418 * 270.19330 * 1 2 3 24 24 H 1.09002 * 109.47305 * 30.19190 * 1 2 3 25 25 H 1.09000 * 109.47166 * 150.19446 * 1 2 3 26 26 H 1.08007 * 126.49327 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.18295 * 359.97438 * 5 4 3 28 28 H 1.09006 * 109.46949 * 40.02136 * 9 8 6 29 29 H 1.08999 * 109.47041 * 160.01968 * 9 8 6 30 30 H 1.09000 * 109.47265 * 300.00242 * 10 9 8 31 31 H 1.08999 * 109.47273 * 59.99918 * 10 9 8 32 32 H 0.97000 * 119.99797 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.01940 * 180.02562 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 3.6706 0.6458 -0.0065 5 6 4.9038 1.3016 -0.0138 6 6 6.0676 0.5638 -0.0192 7 9 7.2627 1.1939 -0.0268 8 6 6.0182 -0.8255 -0.0167 9 6 7.3002 -1.6177 -0.0233 10 6 7.8573 -1.6745 -1.4471 11 6 9.1389 -2.4672 -1.4538 12 1 9.5184 -2.8880 -0.5345 13 6 9.8276 -2.6544 -2.6335 14 7 9.3658 -2.1415 -3.7530 15 14 11.4166 -3.6363 -2.6417 16 1 11.1489 -5.0154 -2.1600 17 1 11.9573 -3.6915 -4.0237 18 1 12.4067 -2.9833 -1.7481 19 6 4.8092 -1.4850 -0.0093 20 6 3.6224 -0.7597 -0.0048 21 7 2.2923 -1.1203 0.0039 22 1 1.9622 -2.0324 0.0074 23 1 -0.3634 0.0035 1.0277 24 1 -0.3634 0.8883 -0.5168 25 1 -0.3633 -0.8917 -0.5108 26 1 1.9355 2.1236 -0.0004 27 1 4.9449 2.3808 -0.0159 28 1 8.0270 -1.1381 0.6324 29 1 7.1038 -2.6297 0.3307 30 1 7.1305 -2.1540 -2.1028 31 1 8.0537 -0.6625 -1.8011 32 1 9.8501 -2.2735 -4.5830 33 1 4.7827 -2.5647 -0.0070 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260021621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:05 Heat of formation + Delta-G solvation = -11.935911 kcal Electronic energy + Delta-G solvation = -16901.657424 eV Core-core repulsion = 14034.281008 eV Total energy + Delta-G solvation = -2867.376416 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -48.20298 -41.10184 -37.05083 -33.76820 -32.15638 -31.77704 -29.68441 -28.74351 -26.77054 -24.33376 -22.29123 -21.58513 -20.43480 -19.86784 -17.30399 -16.90500 -16.29784 -15.61710 -15.08857 -14.56949 -14.55230 -14.36940 -13.78254 -13.27680 -13.07957 -12.96068 -12.72969 -12.51378 -12.23355 -12.04693 -11.95890 -11.31849 -10.91960 -10.83097 -10.48765 -10.42283 -9.81219 -9.70440 -9.25824 -9.06420 -8.30283 -7.65668 -7.47724 -5.95077 -3.98082 1.25251 1.76694 2.73415 3.13180 3.36593 3.40680 3.43295 4.03045 4.49707 4.52700 4.85837 4.91897 5.07389 5.26464 5.27039 5.40312 5.42536 5.54369 5.56765 5.68514 5.99419 6.08053 6.21706 6.37945 6.50272 6.65434 6.82004 6.86284 6.95879 7.04755 7.40087 7.59512 7.72069 7.86345 8.04621 8.44688 9.08347 9.65326 11.16088 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.004710 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.858392 B = 5943.977194 C = 6296.657246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.073 3.927 3 C -0.203 4.203 4 C -0.096 4.096 5 C -0.116 4.116 6 C 0.083 3.917 7 F -0.135 7.135 8 C -0.068 4.068 9 C -0.077 4.077 10 C 0.030 3.970 11 C -0.522 4.522 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.109 4.109 20 C 0.091 3.909 21 N -0.594 5.594 22 H 0.412 0.588 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.144 0.856 27 H 0.130 0.870 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 4.102 8.249 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.035 4.035 3 C -0.229 4.229 4 C -0.101 4.101 5 C -0.136 4.136 6 C 0.063 3.937 7 F -0.114 7.114 8 C -0.070 4.070 9 C -0.114 4.114 10 C -0.007 4.007 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.129 4.129 20 C -0.015 4.015 21 N -0.198 5.198 22 H 0.249 0.751 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.161 0.839 27 H 0.148 0.852 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.313 4.039 8.056 19.518 hybrid contribution 0.961 -0.836 -0.208 1.291 sum -16.352 3.203 7.849 18.418 Atomic orbital electron populations 1.20439 0.87940 1.03560 1.02901 1.20243 0.93220 0.85983 1.04052 1.21340 0.90119 0.97593 1.13805 1.18767 0.92918 0.91838 1.06544 1.20304 0.89622 0.99753 1.03878 1.17231 0.80543 0.90152 1.05792 1.91489 1.43723 1.82141 1.94038 1.20068 0.96682 0.92118 0.98100 1.20795 0.90926 0.97431 1.02267 1.19067 0.95384 0.97619 0.88663 1.21196 1.07460 1.33333 0.94001 0.92614 1.25018 0.97779 0.95927 0.95647 1.69969 1.39428 1.45131 0.98810 0.86649 0.83764 0.80550 0.76972 1.20274 1.21304 1.20188 1.19738 0.88233 0.99281 1.05670 1.18191 0.84389 0.94042 1.04922 1.41672 1.03997 1.07981 1.66164 0.75112 0.90679 0.89828 0.91479 0.83870 0.85182 0.91633 0.91862 0.96483 0.96118 0.92955 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.39 36.00 0.37 -0.23 16 2 C 0.07 0.80 7.08 -81.78 -0.58 0.22 16 3 C -0.20 -2.59 10.95 -37.67 -0.41 -3.00 16 4 C -0.10 -1.53 6.37 -105.14 -0.67 -2.20 16 5 C -0.12 -1.94 10.07 -39.21 -0.40 -2.34 16 6 C 0.08 1.60 7.22 -39.45 -0.28 1.32 16 7 F -0.14 -2.81 16.63 2.25 0.04 -2.77 16 8 C -0.07 -1.32 5.14 -104.52 -0.54 -1.86 16 9 C -0.08 -1.67 4.98 -27.88 -0.14 -1.81 16 10 C 0.03 0.80 4.95 -27.89 -0.14 0.66 16 11 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.11 -1.84 9.67 -39.46 -0.38 -2.22 16 20 C 0.09 1.41 7.27 -83.96 -0.61 0.80 16 21 N -0.59 -7.08 6.08 -6.95 -0.04 -7.13 16 22 H 0.41 3.66 8.96 -40.82 -0.37 3.29 16 23 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.07 1.43 7.93 -51.93 -0.41 1.02 16 29 H 0.06 1.28 7.98 -51.93 -0.41 0.87 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.13 1.92 8.02 -52.48 -0.42 1.50 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -33.05 291.28 -8.20 -41.24 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.11 Total: -1.39 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -4.18 Total: -24.51 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.69 Total: -33.96 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.05 -8.20 -41.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.307 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds