Wall clock time and date at job start Mon Mar 30 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34240 * 125.03796 * 2 1 4 4 C 1.46483 * 107.01109 * 180.26561 * 3 2 1 5 5 C 1.39673 * 133.97144 * 179.75341 * 4 3 2 6 6 C 1.37796 * 119.62815 * 180.02562 * 5 4 3 7 7 F 1.35102 * 119.83117 * 179.97438 * 6 5 4 8 8 C 1.39026 * 120.33179 * 359.96164 * 6 5 4 9 9 C 1.50704 * 119.67435 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47268 * 280.02192 * 9 8 6 11 11 C 1.50694 * 109.47259 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00218 * 359.97438 * 11 10 9 13 13 C 1.37883 * 120.00304 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99653 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00108 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47349 * 60.00294 * 15 13 11 17 17 H 1.48505 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47501 * 299.99769 * 15 13 11 19 19 C 1.37713 * 120.64976 * 0.02562 * 8 6 5 20 20 C 1.39090 * 119.95597 * 0.02562 * 19 8 6 21 21 N 1.36813 * 125.03151 * 179.80037 * 2 1 3 22 22 H 0.97001 * 125.07254 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47418 * 270.19330 * 1 2 3 24 24 H 1.09002 * 109.47305 * 30.19190 * 1 2 3 25 25 H 1.09000 * 109.47166 * 150.19446 * 1 2 3 26 26 H 1.08007 * 126.49327 * 359.97438 * 3 2 1 27 27 H 1.08002 * 120.18295 * 359.97438 * 5 4 3 28 28 H 1.09006 * 109.46949 * 40.02136 * 9 8 6 29 29 H 1.08999 * 109.47041 * 160.01968 * 9 8 6 30 30 H 1.09000 * 109.47265 * 300.00242 * 10 9 8 31 31 H 1.08999 * 109.47273 * 59.99918 * 10 9 8 32 32 H 0.97000 * 119.99797 * 180.02562 * 14 13 11 33 33 H 1.08003 * 120.01940 * 180.02562 * 19 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 3.6706 0.6458 -0.0065 5 6 4.9038 1.3016 -0.0138 6 6 6.0676 0.5638 -0.0192 7 9 7.2627 1.1939 -0.0268 8 6 6.0182 -0.8255 -0.0167 9 6 7.3002 -1.6177 -0.0233 10 6 7.8573 -1.6745 -1.4471 11 6 9.1389 -2.4672 -1.4538 12 1 9.5184 -2.8880 -0.5345 13 6 9.8276 -2.6544 -2.6335 14 7 9.3658 -2.1415 -3.7530 15 14 11.4166 -3.6363 -2.6417 16 1 11.1489 -5.0154 -2.1600 17 1 11.9573 -3.6915 -4.0237 18 1 12.4067 -2.9833 -1.7481 19 6 4.8092 -1.4850 -0.0093 20 6 3.6224 -0.7597 -0.0048 21 7 2.2923 -1.1203 0.0039 22 1 1.9622 -2.0324 0.0074 23 1 -0.3634 0.0035 1.0277 24 1 -0.3634 0.8883 -0.5168 25 1 -0.3633 -0.8917 -0.5108 26 1 1.9355 2.1236 -0.0004 27 1 4.9449 2.3808 -0.0159 28 1 8.0270 -1.1381 0.6324 29 1 7.1038 -2.6297 0.3307 30 1 7.1305 -2.1540 -2.1028 31 1 8.0537 -0.6625 -1.8011 32 1 9.8501 -2.2735 -4.5830 33 1 4.7827 -2.5647 -0.0070 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260021621.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:02 Heat of formation + Delta-G solvation = -31.178906 kcal Electronic energy + Delta-G solvation = -16902.491863 eV Core-core repulsion = 14034.281008 eV Total energy + Delta-G solvation = -2868.210854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -49.73185 -42.20741 -38.38849 -35.69702 -33.84984 -32.87761 -31.09013 -29.96693 -28.24025 -26.03870 -23.55507 -23.33741 -21.76910 -21.06564 -18.69771 -18.30018 -18.23370 -17.02863 -16.65094 -16.39101 -15.75452 -15.57378 -15.02781 -14.69507 -14.55026 -14.20926 -13.94656 -13.78132 -13.60227 -13.54571 -13.09459 -12.85082 -12.78398 -12.56920 -12.11959 -11.87681 -11.73143 -11.49385 -11.20959 -10.59443 -10.56339 -8.96473 -8.61703 -8.19670 -6.32800 0.01505 0.41340 1.39524 1.43892 1.51669 1.72045 2.14065 2.41014 2.71186 3.12517 3.36984 3.66073 3.89174 3.95800 4.21141 4.36857 4.41657 4.47677 4.61506 4.77947 4.84168 4.85292 4.96766 5.09589 5.13865 5.16029 5.22207 5.35525 5.46726 5.70547 5.73877 5.81578 5.82250 6.13045 6.21069 6.68742 6.83235 7.36419 8.91910 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.004710 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.858392 B = 5943.977194 C = 6296.657246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.096 3.904 3 C -0.226 4.226 4 C -0.107 4.107 5 C -0.115 4.115 6 C 0.050 3.950 7 F -0.154 7.154 8 C -0.101 4.101 9 C -0.061 4.061 10 C 0.038 3.962 11 C -0.546 4.546 12 H 0.064 0.936 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.970 3.030 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.102 4.102 20 C 0.078 3.922 21 N -0.583 5.583 22 H 0.428 0.572 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.167 0.833 27 H 0.149 0.851 28 H 0.057 0.943 29 H 0.077 0.923 30 H -0.008 1.008 31 H -0.017 1.017 32 H 0.264 0.736 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 3.365 9.022 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.013 4.013 3 C -0.251 4.251 4 C -0.112 4.112 5 C -0.134 4.134 6 C 0.030 3.970 7 F -0.133 7.133 8 C -0.103 4.103 9 C -0.098 4.098 10 C 0.001 3.999 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.122 4.122 20 C -0.029 4.029 21 N -0.188 5.188 22 H 0.268 0.732 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.185 0.815 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.010 0.990 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.557 3.286 8.848 21.715 hybrid contribution 1.416 -0.572 -0.450 1.592 sum -18.141 2.714 8.398 20.174 Atomic orbital electron populations 1.20632 0.84174 1.05222 1.04606 1.21011 0.95259 0.84826 1.00206 1.21691 0.88438 0.99558 1.15364 1.19228 0.94068 0.92358 1.05592 1.20501 0.89233 1.00667 1.02984 1.17547 0.80759 0.90536 1.08135 1.91424 1.44986 1.82439 1.94481 1.19874 0.96509 0.92222 1.01715 1.20468 0.92113 0.98691 0.98555 1.18876 0.94715 0.94792 0.91487 1.21661 1.08407 1.33703 0.94630 0.91744 1.26042 1.01818 0.96964 0.95053 1.70122 1.41247 1.46497 0.99592 0.85435 0.78673 0.79252 0.77287 1.18709 1.20750 1.19239 1.19828 0.88052 1.00055 1.04312 1.18200 0.85547 0.94080 1.05099 1.41781 1.02653 1.09449 1.64959 0.73201 0.88763 0.88216 0.89818 0.81538 0.83329 0.92423 0.90454 0.98966 0.99826 0.92734 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.39 71.23 0.74 0.00 16 2 C 0.10 1.74 7.08 40.87 0.29 2.03 16 3 C -0.23 -5.14 10.95 23.51 0.26 -4.88 16 4 C -0.11 -3.30 6.37 -20.20 -0.13 -3.43 16 5 C -0.11 -3.89 10.07 22.51 0.23 -3.66 16 6 C 0.05 2.04 7.22 22.35 0.16 2.21 16 7 F -0.15 -6.88 16.63 44.97 0.75 -6.14 16 8 C -0.10 -4.13 5.14 -19.80 -0.10 -4.23 16 9 C -0.06 -2.78 4.98 29.85 0.15 -2.63 16 10 C 0.04 2.19 4.95 29.84 0.15 2.34 16 11 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 12 H 0.06 3.63 7.74 -2.91 -0.02 3.61 16 13 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 14 N -0.93 -59.31 13.29 21.45 0.28 -59.03 16 15 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 C -0.10 -3.47 9.67 22.35 0.22 -3.25 16 20 C 0.08 2.34 7.27 38.99 0.28 2.62 16 21 N -0.58 -12.22 6.08 -175.89 -1.07 -13.29 16 22 H 0.43 6.18 8.96 -92.71 -0.83 5.35 16 23 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 27 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.06 2.65 7.93 -2.38 -0.02 2.63 16 29 H 0.08 3.21 7.98 -2.39 -0.02 3.19 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.14 4.23 8.02 -2.91 -0.02 4.21 16 Total: -1.00 -74.49 291.28 5.22 -69.27 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: 0.29 Total: 6.46 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 2.94 Total: -44.84 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -0.78 Total: -72.32 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.75 Total: -6.14 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.49 5.22 -69.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260021621.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.092 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds