Wall clock time and date at job start Mon Mar 30 2020 06:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00463 * 2 1 4 4 H 1.48504 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46931 * 300.00073 * 3 2 1 6 6 H 1.48490 * 109.47002 * 60.00306 * 3 2 1 7 7 C 1.39697 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.41389 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.46974 * 127.41442 * 359.97438 * 9 7 2 11 11 C 1.34092 * 106.50482 * 180.02562 * 10 9 7 12 12 O 1.34652 * 109.20711 * 0.02562 * 11 10 9 13 13 C 1.33798 * 111.21545 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.04691 * 180.02562 * 13 12 11 15 15 C 1.54268 * 110.03522 * 57.14376 * 14 13 12 16 16 C 1.54894 * 104.19792 * 217.10552 * 15 14 13 17 17 C 1.54885 * 102.74633 * 37.93698 * 16 15 14 18 18 C 1.53872 * 110.03423 * 299.97524 * 14 13 12 19 19 C 1.51472 * 108.54683 * 180.02562 * 11 10 9 20 20 N 1.48100 * 105.66895 * 342.68023 * 19 11 10 21 21 C 1.48373 * 103.11264 * 26.87053 * 20 19 11 22 22 H 0.97005 * 119.99510 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.01459 * 178.58306 * 14 13 12 24 24 H 1.08998 * 110.48297 * 335.78186 * 15 14 13 25 25 H 1.08998 * 110.48811 * 98.42313 * 15 14 13 26 26 H 1.09003 * 110.75094 * 279.62498 * 16 15 14 27 27 H 1.08990 * 110.75613 * 156.25493 * 16 15 14 28 28 H 1.08999 * 110.48885 * 203.37985 * 17 16 15 29 29 H 1.09006 * 110.59844 * 80.79366 * 17 16 15 30 30 H 1.09003 * 110.03047 * 238.56946 * 18 14 13 31 31 H 1.08999 * 110.03201 * 359.95030 * 18 14 13 32 32 H 1.09002 * 110.22290 * 101.75661 * 19 11 10 33 33 H 1.08997 * 110.22236 * 223.61281 * 19 11 10 34 34 H 1.00903 * 110.99808 * 145.87722 * 20 19 11 35 35 H 1.08997 * 110.25286 * 214.22581 * 21 20 19 36 36 H 1.08999 * 110.23958 * 92.20348 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 3.7043 1.3461 -0.0006 5 1 1.8856 2.3963 -1.2125 6 1 1.8857 2.3963 1.2125 7 6 2.0086 -1.2099 -0.0005 8 1 3.0886 -1.2100 -0.0010 9 6 1.3016 -2.4343 -0.0005 10 6 -0.1559 -2.6238 0.0005 11 6 -0.3679 -3.9478 0.0007 12 8 0.8176 -4.5863 0.0004 13 6 1.8353 -3.7176 -0.0005 14 6 3.3008 -4.0687 -0.0016 15 6 3.6307 -4.9567 -1.2193 16 6 4.6813 -5.9609 -0.6836 17 6 4.1738 -6.2543 0.7500 18 6 3.6462 -4.8938 1.2504 19 6 -1.8620 -4.1966 0.0011 20 7 -2.4800 -2.9194 0.4257 21 6 -1.4828 -1.9057 0.0020 22 1 -0.4850 0.8401 0.0004 23 1 3.9022 -3.1599 -0.0275 24 1 2.7391 -5.4829 -1.5603 25 1 4.0527 -4.3569 -2.0257 26 1 5.6717 -5.5065 -0.6574 27 1 4.6881 -6.8701 -1.2846 28 1 4.9921 -6.6015 1.3808 29 1 3.3704 -6.9907 0.7293 30 1 4.4158 -4.3858 1.8317 31 1 2.7540 -5.0395 1.8594 32 1 -2.1998 -4.4641 -1.0002 33 1 -2.1119 -4.9888 0.7067 34 1 -3.3645 -2.7740 -0.0376 35 1 -1.4628 -1.0772 0.7100 36 1 -1.7164 -1.5424 -0.9988 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:00 Heat of formation + Delta-G solvation = 26.155643 kcal Electronic energy + Delta-G solvation = -18340.865554 eV Core-core repulsion = 15598.601218 eV Total energy + Delta-G solvation = -2742.264337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68910 -37.44217 -36.30848 -33.81156 -30.61538 -29.23948 -28.13066 -27.12594 -27.00465 -24.35625 -21.58293 -20.23065 -19.88316 -19.77253 -17.38790 -16.57771 -15.51171 -15.32698 -14.94560 -14.68122 -14.42737 -13.62820 -13.35048 -12.95145 -12.76485 -12.48739 -12.27654 -11.83207 -11.45812 -11.26057 -10.85637 -10.80932 -10.66022 -10.53651 -10.47792 -10.22763 -10.15963 -9.84647 -9.73337 -9.44017 -9.32485 -8.28631 -7.66822 -6.69660 -6.45162 -4.17031 2.94149 3.13001 3.17879 3.26683 3.90920 4.02676 4.06156 5.09723 5.15167 5.19230 5.28279 5.47086 5.81440 5.84011 5.94597 6.06792 6.09077 6.14121 6.15785 6.19411 6.30732 6.36491 6.40382 6.55376 6.68418 6.75958 6.88783 7.01795 7.10403 7.18344 7.36167 7.44299 7.57911 7.81472 7.98023 8.07413 8.42471 8.87953 8.92633 9.16677 10.39679 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.009854 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.425472 B = 2840.675300 C = 4246.990438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.441 4.441 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.161 4.161 11 C -0.106 4.106 12 O -0.178 6.178 13 C -0.194 4.194 14 C 0.034 3.966 15 C -0.118 4.118 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.119 4.119 19 C 0.147 3.853 20 N -0.671 5.671 21 C 0.135 3.865 22 H 0.273 0.727 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.331 0.669 35 H 0.114 0.886 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 -5.107 -1.043 5.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.473 4.473 8 H 0.092 0.908 9 C 0.058 3.942 10 C -0.165 4.165 11 C -0.157 4.157 12 O -0.078 6.078 13 C -0.242 4.242 14 C 0.016 3.984 15 C -0.156 4.156 16 C -0.162 4.162 17 C -0.159 4.159 18 C -0.157 4.157 19 C 0.018 3.982 20 N -0.301 5.301 21 C 0.009 3.991 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.132 0.868 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 1.927 -5.247 -0.301 5.598 hybrid contribution 0.194 1.017 -1.055 1.478 sum 2.120 -4.230 -1.356 4.922 Atomic orbital electron populations 1.69989 1.06859 1.27409 1.40351 1.25838 0.95046 1.00854 0.92320 0.86206 0.80520 0.81301 0.78242 1.18795 1.20219 1.20113 1.18822 0.93839 0.89078 1.45516 0.90763 1.18361 0.88682 0.91909 0.95228 1.21726 0.94565 0.92485 1.07715 1.22301 0.88002 0.93147 1.12211 1.83091 1.11578 1.36984 1.76172 1.21774 0.87100 0.86227 1.29082 1.19635 0.87983 0.97703 0.93073 1.22479 0.98193 0.97022 0.97905 1.22498 0.98653 0.98789 0.96300 1.22337 0.99605 0.97871 0.96132 1.22277 1.00417 0.94859 0.98167 1.20530 0.85088 0.94337 0.98240 1.64235 1.05498 1.02566 1.57775 1.21028 0.85850 0.92916 0.99322 0.91644 0.89576 0.91634 0.92193 0.91952 0.92386 0.92585 0.92066 0.92494 0.91650 0.93899 0.90928 0.85500 0.86836 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.97 7.99 55.54 0.44 -20.52 16 2 C 0.07 1.85 5.49 -17.35 -0.10 1.76 16 3 Si 0.91 19.29 29.56 -169.99 -5.02 14.26 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.44 -11.95 9.14 -37.84 -0.35 -12.30 16 8 H 0.07 1.93 6.93 -52.49 -0.36 1.57 16 9 C 0.06 1.69 6.11 -104.88 -0.64 1.05 16 10 C -0.16 -4.30 6.26 -102.46 -0.64 -4.94 16 11 C -0.11 -2.63 8.30 -35.39 -0.29 -2.93 16 12 O -0.18 -4.50 10.38 6.08 0.06 -4.44 16 13 C -0.19 -4.86 5.68 -34.03 -0.19 -5.05 16 14 C 0.03 0.71 3.33 -90.66 -0.30 0.41 16 15 C -0.12 -2.11 6.35 -25.07 -0.16 -2.27 16 16 C -0.12 -1.82 6.91 -24.74 -0.17 -1.99 16 17 C -0.12 -1.84 6.83 -25.08 -0.17 -2.01 16 18 C -0.12 -2.16 6.45 -25.62 -0.17 -2.32 16 19 C 0.15 2.93 7.47 -3.93 -0.03 2.90 16 20 N -0.67 -13.33 7.78 -113.75 -0.89 -14.21 16 21 C 0.14 3.19 5.55 -4.07 -0.02 3.17 16 22 H 0.27 6.42 8.30 -40.82 -0.34 6.08 16 23 H 0.09 1.80 6.99 -51.92 -0.36 1.44 16 24 H 0.06 1.26 7.73 -51.93 -0.40 0.86 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.30 7.67 -51.93 -0.40 0.90 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.33 5.35 8.92 -39.29 -0.35 5.00 16 35 H 0.11 2.85 6.18 -51.93 -0.32 2.53 16 36 H 0.03 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 286.86 15.07 4.32 4.32 Total: -1.00 -28.91 286.86 -9.45 -38.36 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.14 Total: 6.76 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.23 Total: -24.52 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.44 Total: -34.74 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: 0.06 Total: -4.44 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.91 -9.45 -38.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.512 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds