Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00463 * 2 1 4 4 H 1.48504 * 109.46857 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46931 * 300.00073 * 3 2 1 6 6 H 1.48490 * 109.47002 * 60.00306 * 3 2 1 7 7 C 1.39697 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00445 * 179.97438 * 7 2 1 9 9 C 1.41389 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.46974 * 127.41442 * 359.97438 * 9 7 2 11 11 C 1.34092 * 106.50482 * 180.02562 * 10 9 7 12 12 O 1.34652 * 109.20711 * 0.02562 * 11 10 9 13 13 C 1.33798 * 111.21545 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.04691 * 180.02562 * 13 12 11 15 15 C 1.54268 * 110.03522 * 57.14376 * 14 13 12 16 16 C 1.54894 * 104.19792 * 217.10552 * 15 14 13 17 17 C 1.54885 * 102.74633 * 37.93698 * 16 15 14 18 18 C 1.53872 * 110.03423 * 299.97524 * 14 13 12 19 19 C 1.51472 * 108.54683 * 180.02562 * 11 10 9 20 20 N 1.48100 * 105.66895 * 342.68023 * 19 11 10 21 21 C 1.48373 * 103.11264 * 26.87053 * 20 19 11 22 22 H 0.97005 * 119.99510 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.01459 * 178.58306 * 14 13 12 24 24 H 1.08998 * 110.48297 * 335.78186 * 15 14 13 25 25 H 1.08998 * 110.48811 * 98.42313 * 15 14 13 26 26 H 1.09003 * 110.75094 * 279.62498 * 16 15 14 27 27 H 1.08990 * 110.75613 * 156.25493 * 16 15 14 28 28 H 1.08999 * 110.48885 * 203.37985 * 17 16 15 29 29 H 1.09006 * 110.59844 * 80.79366 * 17 16 15 30 30 H 1.09003 * 110.03047 * 238.56946 * 18 14 13 31 31 H 1.08999 * 110.03201 * 359.95030 * 18 14 13 32 32 H 1.09002 * 110.22290 * 101.75661 * 19 11 10 33 33 H 1.08997 * 110.22236 * 223.61281 * 19 11 10 34 34 H 1.00903 * 110.99808 * 145.87722 * 20 19 11 35 35 H 1.08997 * 110.25286 * 214.22581 * 21 20 19 36 36 H 1.08999 * 110.23958 * 92.20348 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6176 0.0000 4 1 3.7043 1.3461 -0.0006 5 1 1.8856 2.3963 -1.2125 6 1 1.8857 2.3963 1.2125 7 6 2.0086 -1.2099 -0.0005 8 1 3.0886 -1.2100 -0.0010 9 6 1.3016 -2.4343 -0.0005 10 6 -0.1559 -2.6238 0.0005 11 6 -0.3679 -3.9478 0.0007 12 8 0.8176 -4.5863 0.0004 13 6 1.8353 -3.7176 -0.0005 14 6 3.3008 -4.0687 -0.0016 15 6 3.6307 -4.9567 -1.2193 16 6 4.6813 -5.9609 -0.6836 17 6 4.1738 -6.2543 0.7500 18 6 3.6462 -4.8938 1.2504 19 6 -1.8620 -4.1966 0.0011 20 7 -2.4800 -2.9194 0.4257 21 6 -1.4828 -1.9057 0.0020 22 1 -0.4850 0.8401 0.0004 23 1 3.9022 -3.1599 -0.0275 24 1 2.7391 -5.4829 -1.5603 25 1 4.0527 -4.3569 -2.0257 26 1 5.6717 -5.5065 -0.6574 27 1 4.6881 -6.8701 -1.2846 28 1 4.9921 -6.6015 1.3808 29 1 3.3704 -6.9907 0.7293 30 1 4.4158 -4.3858 1.8317 31 1 2.7540 -5.0395 1.8594 32 1 -2.1998 -4.4641 -1.0002 33 1 -2.1119 -4.9888 0.7067 34 1 -3.3645 -2.7740 -0.0376 35 1 -1.4628 -1.0772 0.7100 36 1 -1.7164 -1.5424 -0.9988 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022039.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = 8.193366 kcal Electronic energy + Delta-G solvation = -18341.644457 eV Core-core repulsion = 15598.601218 eV Total energy + Delta-G solvation = -2743.043240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.60537 -38.94211 -38.00770 -35.73276 -32.50224 -30.88949 -29.51081 -28.87600 -28.76996 -26.22352 -23.33812 -21.90880 -21.50905 -21.30479 -19.19164 -18.47194 -17.30804 -16.88886 -16.69341 -16.36314 -16.03357 -15.37022 -15.07372 -14.50497 -14.31975 -14.16028 -13.90218 -13.62739 -13.21789 -12.97362 -12.55978 -12.30711 -12.21122 -11.98889 -11.92263 -11.86909 -11.64803 -11.45265 -11.36747 -11.31690 -11.18297 -10.06167 -9.58340 -8.57571 -8.34627 -6.17337 1.16026 1.38274 1.43499 1.52150 2.09512 2.12582 2.25212 3.38729 3.45432 3.81427 3.85719 3.90602 4.21137 4.30825 4.48965 4.57620 4.59555 4.66296 4.73317 4.75118 4.82126 4.89109 5.02902 5.12818 5.15618 5.19416 5.24391 5.41905 5.48379 5.50000 5.51317 5.64348 5.70049 5.97954 6.08618 6.41148 6.53440 6.90022 6.95370 7.18407 8.50521 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.009854 C = 0.006591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.425472 B = 2840.675300 C = 4246.990438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.028 3.972 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.476 4.476 8 H 0.070 0.930 9 C 0.009 3.991 10 C -0.205 4.205 11 C -0.119 4.119 12 O -0.184 6.184 13 C -0.196 4.196 14 C 0.026 3.974 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.115 4.115 18 C -0.117 4.117 19 C 0.153 3.847 20 N -0.666 5.666 21 C 0.151 3.849 22 H 0.280 0.720 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.355 0.645 35 H 0.094 0.906 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 -5.897 -1.179 6.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.508 4.508 8 H 0.088 0.912 9 C 0.006 3.994 10 C -0.208 4.208 11 C -0.169 4.169 12 O -0.085 6.085 13 C -0.244 4.244 14 C 0.007 3.993 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.155 4.155 19 C 0.024 3.976 20 N -0.298 5.298 21 C 0.024 3.976 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.172 0.828 35 H 0.112 0.888 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.531 -6.061 -0.443 6.583 hybrid contribution -0.054 1.216 -1.006 1.579 sum 2.478 -4.845 -1.449 5.631 Atomic orbital electron populations 1.70113 1.07880 1.28571 1.39838 1.26687 0.96098 1.03889 0.91633 0.85113 0.79037 0.76649 0.78542 1.18607 1.19329 1.19382 1.19022 0.93848 0.90141 1.47756 0.91163 1.18955 0.90085 0.93232 0.97087 1.22216 0.95215 0.94132 1.09269 1.23309 0.89650 0.92990 1.10941 1.83084 1.12142 1.37339 1.75913 1.22581 0.88799 0.85799 1.27196 1.19843 0.85166 0.98375 0.95907 1.22417 0.98746 0.97357 0.96837 1.22475 0.98131 0.98675 0.95714 1.22319 1.00383 0.95605 0.96940 1.22222 0.99816 0.96687 0.96735 1.20742 0.81608 0.94640 1.00608 1.64120 1.05750 1.01697 1.58257 1.20704 0.85633 0.93007 0.98288 0.90996 0.90698 0.93500 0.91783 0.90003 0.90100 0.89533 0.92496 0.91067 0.94352 0.90991 0.88498 0.82841 0.88813 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.04 7.99 21.79 0.17 -43.87 16 2 C 0.03 1.46 5.49 85.17 0.47 1.92 16 3 Si 0.98 40.19 29.56 68.60 2.03 42.22 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.48 -26.95 9.14 23.40 0.21 -26.74 16 8 H 0.07 3.84 6.93 -2.91 -0.02 3.82 16 9 C 0.01 0.54 6.11 -20.03 -0.12 0.41 16 10 C -0.20 -11.24 6.26 -18.46 -0.12 -11.36 16 11 C -0.12 -5.94 8.30 24.99 0.21 -5.73 16 12 O -0.18 -9.57 10.38 -1.15 -0.01 -9.58 16 13 C -0.20 -10.17 5.68 25.87 0.15 -10.02 16 14 C 0.03 1.07 3.33 -10.82 -0.04 1.03 16 15 C -0.12 -4.07 6.35 31.67 0.20 -3.87 16 16 C -0.11 -2.95 6.91 31.89 0.22 -2.73 16 17 C -0.12 -3.19 6.83 31.67 0.22 -2.97 16 18 C -0.12 -4.18 6.45 31.32 0.20 -3.98 16 19 C 0.15 5.83 7.47 85.57 0.64 6.47 16 20 N -0.67 -25.69 7.78 -513.80 -4.00 -29.69 16 21 C 0.15 7.24 5.55 85.33 0.47 7.72 16 22 H 0.28 13.39 8.30 -92.70 -0.77 12.62 16 23 H 0.07 3.24 6.99 -2.38 -0.02 3.23 16 24 H 0.05 1.80 7.73 -2.39 -0.02 1.78 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 31 H 0.04 1.55 7.67 -2.39 -0.02 1.53 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.35 10.75 8.92 -89.69 -0.80 9.95 16 35 H 0.09 4.85 6.18 -2.39 -0.01 4.84 16 36 H 0.02 1.20 8.11 -2.39 -0.02 1.18 16 Total: -1.00 -65.34 286.86 1.19 -64.15 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.29 Total: 26.60 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 2.71 Total: -49.83 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -3.82 Total: -73.56 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.01 Total: -9.58 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -65.34 1.19 -64.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022039.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.342 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds