Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48493 * 109.47211 * 269.99795 * 3 2 1 5 5 H 1.48503 * 109.47319 * 29.99761 * 3 2 1 6 6 H 1.48505 * 109.46900 * 149.99859 * 3 2 1 7 7 C 1.37876 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47012 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47391 * 304.99757 * 10 9 7 12 12 N 1.46901 * 109.47227 * 65.00244 * 10 9 7 13 13 C 1.50704 * 109.46843 * 185.00084 * 10 9 7 14 14 C 1.38231 * 120.00157 * 100.00152 * 13 10 9 15 15 C 1.38232 * 119.99990 * 179.97438 * 14 13 10 16 16 C 1.38235 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00299 * 179.97438 * 16 15 14 18 18 C 1.53365 * 114.56475 * 119.99804 * 17 16 15 19 19 O 1.43355 * 88.44735 * 139.58358 * 18 17 16 20 20 C 1.43354 * 88.31830 * 331.85044 * 19 18 17 21 21 C 1.38237 * 120.00272 * 0.25417 * 16 15 14 22 22 C 1.38239 * 119.99499 * 359.49055 * 21 16 15 23 23 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 59.99738 * 9 7 2 25 25 H 1.09000 * 109.47157 * 299.99964 * 9 7 2 26 26 H 1.00899 * 110.99771 * 296.04452 * 12 10 9 27 27 H 1.00897 * 111.00324 * 59.99514 * 12 10 9 28 28 H 1.07997 * 119.99854 * 359.97438 * 14 13 10 29 29 H 1.08005 * 120.00079 * 179.97438 * 15 14 13 30 30 H 1.09000 * 113.56487 * 345.72820 * 17 16 15 31 31 H 1.08998 * 113.39453 * 24.68473 * 18 17 16 32 32 H 1.08999 * 113.39869 * 254.47765 * 18 17 16 33 33 H 1.08996 * 113.39124 * 143.04979 * 20 19 18 34 34 H 1.09001 * 113.39079 * 273.25136 * 20 19 18 35 35 H 1.08000 * 120.00593 * 179.72502 * 21 16 15 36 36 H 1.07995 * 120.00037 * 180.24737 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8413 12 7 3.0084 -3.6539 1.2558 13 6 1.4959 -4.9637 -0.1233 14 6 1.4102 -5.5980 -1.3485 15 6 0.7232 -6.7922 -1.4620 16 6 0.1215 -7.3518 -0.3503 17 6 -0.6279 -8.6533 -0.4741 18 6 -0.0800 -9.7899 0.3977 19 8 -1.4324 -10.1688 0.6853 20 6 -1.8130 -8.8009 0.4881 21 6 0.2023 -6.7146 0.8737 22 6 0.8938 -5.5230 0.9883 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.5701 -2.8192 1.3320 27 1 2.3962 -3.7517 2.0518 28 1 1.8799 -5.1606 -2.2171 29 1 0.6558 -7.2876 -2.4193 30 1 -0.8430 -8.9361 -1.5046 31 1 0.4665 -9.4390 1.2731 32 1 0.4694 -10.5428 -0.1675 33 1 -2.7819 -8.6870 0.0020 34 1 -1.7189 -8.1916 1.3871 35 1 -0.2715 -7.1495 1.7414 36 1 0.9603 -5.0272 1.9454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = 1.173043 kcal Electronic energy + Delta-G solvation = -17274.372710 eV Core-core repulsion = 14531.025047 eV Total energy + Delta-G solvation = -2743.347664 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.09230 -38.87561 -35.54606 -32.68833 -31.60346 -30.60675 -28.34458 -27.76743 -26.35187 -24.39645 -22.79544 -22.16199 -20.17422 -19.45814 -17.26115 -16.53501 -16.45699 -15.82082 -15.24942 -14.86185 -14.64796 -14.41543 -13.83264 -13.17205 -13.10864 -12.71796 -12.68748 -12.40796 -12.24234 -12.02692 -11.49469 -11.15111 -10.93841 -10.83408 -10.74585 -10.49947 -10.27604 -9.93110 -9.79497 -9.20791 -8.59920 -8.50303 -8.26899 -7.67680 -6.11556 -4.16490 1.62389 1.74407 3.24541 3.31588 3.33747 3.82009 3.89713 4.35589 4.45672 4.65776 4.94558 5.09578 5.14116 5.21806 5.25218 5.29186 5.34012 5.40050 5.62342 5.71664 5.81149 5.84566 5.92471 6.04665 6.14948 6.29496 6.47132 6.68857 6.75085 6.80934 7.09485 7.32359 7.43351 7.54814 7.82138 8.01312 8.17579 8.29480 8.90270 9.48964 10.99025 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046806 B = 0.004229 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.070026 B = 6619.531988 C = 6752.320904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.122 3.878 11 H 0.076 0.924 12 N -0.840 5.840 13 C -0.043 4.043 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.103 4.103 17 C -0.111 4.111 18 C 0.038 3.962 19 O -0.375 6.375 20 C 0.033 3.967 21 C -0.117 4.117 22 C -0.105 4.105 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.346 0.654 27 H 0.328 0.672 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -14.950 0.017 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.011 3.989 11 H 0.094 0.906 12 N -0.368 5.368 13 C -0.043 4.043 14 C -0.136 4.136 15 C -0.128 4.128 16 C -0.103 4.103 17 C -0.129 4.129 18 C -0.039 4.039 19 O -0.294 6.294 20 C -0.044 4.044 21 C -0.135 4.135 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.160 0.840 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.122 -15.742 -0.191 15.743 hybrid contribution -0.175 2.099 0.087 2.108 sum -0.297 -13.643 -0.105 13.646 Atomic orbital electron populations 1.69972 1.06120 1.26792 1.50031 1.25018 0.94825 0.99328 0.95002 0.86579 0.79818 0.83335 0.78194 1.20608 1.21216 1.19775 1.21157 0.92907 0.90813 1.51662 0.92491 1.19791 0.94400 0.91647 0.97870 1.20579 0.94604 0.90750 0.92957 0.90594 1.59275 1.27948 1.45835 1.03774 1.20209 0.95538 0.95689 0.92871 1.21017 0.99963 0.95149 0.97470 1.20884 0.98312 0.95972 0.97601 1.19351 1.00848 0.96032 0.94091 1.22804 0.95932 0.93555 1.00654 1.23776 0.86151 0.95887 0.98117 1.89847 1.21440 1.24931 1.93144 1.23854 0.99018 0.83133 0.98360 1.20890 0.99971 0.95999 0.96619 1.20895 0.97314 0.95345 0.98734 0.92869 0.96224 0.96437 0.84017 0.86006 0.86148 0.86590 0.87126 0.89908 0.89605 0.89488 0.89656 0.86651 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -14.08 8.55 -34.44 -0.29 -14.37 16 8 H 0.06 1.46 7.14 -52.49 -0.37 1.09 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.12 2.45 2.99 -68.86 -0.21 2.25 16 11 H 0.08 1.56 8.00 -51.93 -0.42 1.14 16 12 N -0.84 -15.43 9.02 -5.65 -0.05 -15.48 16 13 C -0.04 -0.76 4.96 -104.62 -0.52 -1.28 16 14 C -0.12 -1.90 9.67 -39.59 -0.38 -2.28 16 15 C -0.11 -1.52 9.72 -39.58 -0.38 -1.90 16 16 C -0.10 -1.35 5.38 -104.62 -0.56 -1.92 16 17 C -0.11 -1.19 4.48 -91.39 -0.41 -1.60 16 18 C 0.04 0.39 8.25 24.60 0.20 0.59 16 19 O -0.37 -4.61 12.74 -35.23 -0.45 -5.06 16 20 C 0.03 0.35 8.14 24.60 0.20 0.55 16 21 C -0.12 -1.63 8.77 -39.58 -0.35 -1.98 16 22 C -0.10 -1.71 9.29 -39.58 -0.37 -2.07 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.35 6.51 7.90 -39.29 -0.31 6.20 16 27 H 0.33 5.74 7.35 -39.29 -0.29 5.45 16 28 H 0.12 1.82 8.04 -52.49 -0.42 1.40 16 29 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 30 H 0.11 1.07 8.12 -51.93 -0.42 0.65 16 31 H 0.08 0.83 7.79 -51.93 -0.40 0.42 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.87 6.10 -51.93 -0.32 0.55 16 35 H 0.12 1.35 6.36 -52.49 -0.33 1.02 16 36 H 0.12 1.88 6.67 -52.49 -0.35 1.53 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -29.64 298.57 -8.47 -38.11 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.89 Total: 9.85 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.30 Total: -22.54 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.69 Total: -40.82 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.45 Total: -5.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.64 -8.47 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.285 kcal (2) G-P(sol) polarization free energy of solvation -29.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds