Wall clock time and date at job start Mon Mar 30 2020 06:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48493 * 109.47211 * 269.99795 * 3 2 1 5 5 H 1.48503 * 109.47319 * 29.99761 * 3 2 1 6 6 H 1.48505 * 109.46900 * 149.99859 * 3 2 1 7 7 C 1.37876 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47012 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47391 * 304.99757 * 10 9 7 12 12 N 1.46901 * 109.47227 * 65.00244 * 10 9 7 13 13 C 1.50704 * 109.46843 * 185.00084 * 10 9 7 14 14 C 1.38231 * 120.00157 * 100.00152 * 13 10 9 15 15 C 1.38232 * 119.99990 * 179.97438 * 14 13 10 16 16 C 1.38235 * 120.00115 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00299 * 179.97438 * 16 15 14 18 18 C 1.53365 * 114.56475 * 119.99804 * 17 16 15 19 19 O 1.43355 * 88.44735 * 139.58358 * 18 17 16 20 20 C 1.43354 * 88.31830 * 331.85044 * 19 18 17 21 21 C 1.38237 * 120.00272 * 0.25417 * 16 15 14 22 22 C 1.38239 * 119.99499 * 359.49055 * 21 16 15 23 23 H 0.96997 * 119.99951 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47142 * 59.99738 * 9 7 2 25 25 H 1.09000 * 109.47157 * 299.99964 * 9 7 2 26 26 H 1.00899 * 110.99771 * 296.04452 * 12 10 9 27 27 H 1.00897 * 111.00324 * 59.99514 * 12 10 9 28 28 H 1.07997 * 119.99854 * 359.97438 * 14 13 10 29 29 H 1.08005 * 120.00079 * 179.97438 * 15 14 13 30 30 H 1.09000 * 113.56487 * 345.72820 * 17 16 15 31 31 H 1.08998 * 113.39453 * 24.68473 * 18 17 16 32 32 H 1.08999 * 113.39869 * 254.47765 * 18 17 16 33 33 H 1.08996 * 113.39124 * 143.04979 * 20 19 18 34 34 H 1.09001 * 113.39079 * 273.25136 * 20 19 18 35 35 H 1.08000 * 120.00593 * 179.72502 * 21 16 15 36 36 H 1.07995 * 120.00037 * 180.24737 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8413 12 7 3.0084 -3.6539 1.2558 13 6 1.4959 -4.9637 -0.1233 14 6 1.4102 -5.5980 -1.3485 15 6 0.7232 -6.7922 -1.4620 16 6 0.1215 -7.3518 -0.3503 17 6 -0.6279 -8.6533 -0.4741 18 6 -0.0800 -9.7899 0.3977 19 8 -1.4324 -10.1688 0.6853 20 6 -1.8130 -8.8009 0.4881 21 6 0.2023 -6.7146 0.8737 22 6 0.8938 -5.5230 0.9883 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 3.5701 -2.8192 1.3320 27 1 2.3962 -3.7517 2.0518 28 1 1.8799 -5.1606 -2.2171 29 1 0.6558 -7.2876 -2.4193 30 1 -0.8430 -8.9361 -1.5046 31 1 0.4665 -9.4390 1.2731 32 1 0.4694 -10.5428 -0.1675 33 1 -2.7819 -8.6870 0.0020 34 1 -1.7189 -8.1916 1.3871 35 1 -0.2715 -7.1495 1.7414 36 1 0.9603 -5.0272 1.9454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030412.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:29 Heat of formation + Delta-G solvation = -17.955415 kcal Electronic energy + Delta-G solvation = -17275.202183 eV Core-core repulsion = 14531.025047 eV Total energy + Delta-G solvation = -2744.177136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.98487 -40.08732 -37.09966 -34.62094 -32.82005 -31.78907 -29.95943 -29.19483 -27.14385 -26.09612 -23.96754 -23.65998 -21.43596 -20.65519 -18.83497 -18.01636 -17.28812 -16.78207 -16.62681 -16.59478 -16.11649 -15.59677 -15.08450 -14.73041 -14.33186 -14.21358 -14.08002 -13.73586 -13.49851 -13.23954 -13.10122 -12.83328 -12.44141 -12.30205 -12.04154 -11.77211 -11.71338 -11.65749 -11.16324 -10.64908 -10.63106 -9.76231 -9.61689 -9.18060 -8.23280 -6.35867 0.43660 0.56714 1.39466 1.39644 1.50726 2.37602 2.78265 3.00530 3.09864 3.52187 3.74028 3.85488 3.98048 4.15858 4.20420 4.21428 4.34064 4.41489 4.55716 4.62777 4.66257 4.79662 4.85925 4.92674 5.03892 5.13750 5.16110 5.22172 5.33562 5.47214 5.56489 5.69045 5.73706 5.86871 6.12709 6.16572 6.38711 6.70255 6.80755 7.34428 8.87717 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046806 B = 0.004229 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.070026 B = 6619.531988 C = 6752.320904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.013 3.987 10 C 0.137 3.863 11 H 0.068 0.932 12 N -0.828 5.828 13 C -0.074 4.074 14 C -0.131 4.131 15 C -0.108 4.108 16 C -0.092 4.092 17 C -0.107 4.107 18 C 0.038 3.962 19 O -0.394 6.394 20 C 0.030 3.970 21 C -0.116 4.116 22 C -0.119 4.119 23 H 0.263 0.737 24 H -0.015 1.015 25 H -0.008 1.008 26 H 0.344 0.656 27 H 0.334 0.666 28 H 0.123 0.877 29 H 0.146 0.854 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -16.121 -0.146 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.576 4.576 8 H 0.084 0.916 9 C -0.026 4.026 10 C 0.025 3.975 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.074 4.074 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.093 4.093 17 C -0.126 4.126 18 C -0.038 4.038 19 O -0.313 6.313 20 C -0.046 4.046 21 C -0.134 4.134 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.004 0.996 25 H 0.010 0.990 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.156 0.844 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.385 -16.930 -0.347 16.937 hybrid contribution -0.376 2.369 0.137 2.402 sum 0.010 -14.561 -0.210 14.562 Atomic orbital electron populations 1.70112 1.07907 1.27742 1.51386 1.25945 0.95634 1.03293 0.94619 0.85459 0.78792 0.78518 0.78354 1.20106 1.21111 1.18348 1.21575 0.93509 0.91762 1.50796 0.91630 1.19649 0.94556 0.93506 0.94886 1.20276 0.93391 0.90514 0.93329 0.91350 1.59271 1.27541 1.45372 1.03447 1.20102 0.97395 0.95493 0.94452 1.21181 1.00699 0.96225 0.96887 1.21204 0.97175 0.95016 0.99214 1.19652 0.99642 0.96582 0.93397 1.22855 0.95729 0.92195 1.01782 1.23866 0.85666 0.96028 0.98260 1.89846 1.22476 1.25713 1.93281 1.23957 0.99533 0.82582 0.98564 1.21138 0.99194 0.95056 0.98011 1.20989 0.98031 0.96467 0.98237 0.92848 0.99631 0.98985 0.84317 0.85404 0.85924 0.83674 0.85512 0.89655 0.87952 0.88416 0.89336 0.84377 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.25 8.55 25.60 0.22 -29.03 16 8 H 0.07 3.37 7.14 -2.91 -0.02 3.35 16 9 C 0.01 0.65 4.60 29.85 0.14 0.79 16 10 C 0.14 5.61 2.99 44.17 0.13 5.74 16 11 H 0.07 2.87 8.00 -2.39 -0.02 2.85 16 12 N -0.83 -30.65 9.02 -171.79 -1.55 -32.20 16 13 C -0.07 -2.68 4.96 -19.86 -0.10 -2.77 16 14 C -0.13 -4.19 9.67 22.27 0.22 -3.98 16 15 C -0.11 -2.78 9.72 22.27 0.22 -2.56 16 16 C -0.09 -2.21 5.38 -19.87 -0.11 -2.32 16 17 C -0.11 -1.97 4.48 -11.30 -0.05 -2.02 16 18 C 0.04 0.68 8.25 63.84 0.53 1.20 16 19 O -0.39 -8.68 12.74 -148.98 -1.90 -10.58 16 20 C 0.03 0.56 8.14 63.84 0.52 1.08 16 21 C -0.12 -3.06 8.77 22.27 0.20 -2.86 16 22 C -0.12 -3.86 9.29 22.27 0.21 -3.65 16 23 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.34 12.92 7.90 -89.69 -0.71 12.22 16 27 H 0.33 11.82 7.35 -89.70 -0.66 11.16 16 28 H 0.12 3.72 8.04 -2.91 -0.02 3.70 16 29 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.13 1.96 8.12 -2.39 -0.02 1.95 16 31 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.58 6.10 -2.39 -0.01 1.56 16 35 H 0.14 2.94 6.36 -2.91 -0.02 2.92 16 36 H 0.12 3.73 6.67 -2.91 -0.02 3.71 16 Total: -1.00 -64.15 298.57 1.17 -62.99 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.27 Total: 29.89 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 2.58 Total: -39.74 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -1.26 Total: -87.78 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.90 Total: -10.58 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -64.15 1.17 -62.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030412.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -64.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds