Wall clock time and date at job start Mon Mar 30 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99844 * 2 1 4 4 H 1.48497 * 109.46632 * 269.99700 * 3 2 1 5 5 H 1.48496 * 109.46861 * 29.99334 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99688 * 3 2 1 7 7 C 1.37875 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47188 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47103 * 54.99557 * 10 9 7 12 12 N 1.46901 * 109.46963 * 294.99733 * 10 9 7 13 13 C 1.50701 * 109.47202 * 175.00192 * 10 9 7 14 14 C 1.38239 * 119.99820 * 259.99680 * 13 10 9 15 15 C 1.38228 * 120.00236 * 179.97438 * 14 13 10 16 16 C 1.38242 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99937 * 179.97438 * 16 15 14 18 18 C 1.54038 * 113.81818 * 143.81040 * 17 16 15 19 19 O 1.44178 * 85.51698 * 136.80343 * 18 17 16 20 20 C 1.44176 * 93.34170 * 335.80761 * 19 18 17 21 21 C 1.38234 * 120.00019 * 0.25046 * 16 15 14 22 22 C 1.38228 * 120.00143 * 79.97562 * 13 10 9 23 23 H 0.97003 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47440 * 59.99727 * 9 7 2 25 25 H 1.09002 * 109.47066 * 299.99523 * 9 7 2 26 26 H 1.00901 * 110.99993 * 300.00122 * 12 10 9 27 27 H 1.00904 * 111.00201 * 63.95246 * 12 10 9 28 28 H 1.07999 * 119.99748 * 359.97438 * 14 13 10 29 29 H 1.07993 * 120.00469 * 180.02562 * 15 14 13 30 30 H 1.08999 * 113.08128 * 11.90156 * 17 16 15 31 31 H 1.08997 * 113.86481 * 250.95169 * 18 17 16 32 32 H 1.09002 * 113.86144 * 22.65328 * 18 17 16 33 33 H 1.08997 * 113.86615 * 270.04970 * 20 19 18 34 34 H 1.08997 * 113.86526 * 138.33783 * 20 19 18 35 35 H 1.07997 * 119.99827 * 179.72854 * 21 16 15 36 36 H 1.08002 * 120.00287 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8423 12 7 3.0084 -3.6538 -1.2547 13 6 1.4961 -4.9636 0.1243 14 6 1.4104 -5.5980 1.3496 15 6 0.7226 -6.7916 1.4633 16 6 0.1209 -7.3513 0.3516 17 6 -0.6284 -8.6529 0.4755 18 6 -1.8821 -8.7362 -0.4156 19 8 -1.4413 -10.0757 -0.7158 20 6 -0.0639 -9.7820 -0.4072 21 6 0.2114 -6.7199 -0.8747 22 6 0.8941 -5.5230 -0.9872 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.3961 -3.7516 -2.0507 27 1 3.5701 -2.8191 -1.3311 28 1 1.8808 -5.1610 2.2180 29 1 0.6553 -7.2870 2.4206 30 1 -0.8033 -8.9486 1.5099 31 1 -2.8202 -8.6942 0.1379 32 1 -1.8599 -8.0622 -1.2720 33 1 0.5134 -9.4274 -1.2610 34 1 0.4400 -10.5696 0.1530 35 1 -0.2549 -7.1593 -1.7441 36 1 0.9611 -5.0275 -1.9445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260030424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:32 Heat of formation + Delta-G solvation = -1.690946 kcal Electronic energy + Delta-G solvation = -17278.904871 eV Core-core repulsion = 14535.433015 eV Total energy + Delta-G solvation = -2743.471856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75062 -38.79293 -35.51963 -32.66456 -31.49329 -30.60050 -28.26365 -27.69683 -26.64353 -24.35618 -22.74226 -22.14007 -20.09788 -19.43496 -17.22967 -16.50864 -16.44712 -15.82181 -15.23560 -14.82544 -14.64598 -14.38134 -13.80621 -13.15353 -13.08718 -12.78475 -12.65943 -12.35711 -12.25090 -12.00278 -11.42864 -11.26955 -10.95189 -10.78591 -10.73366 -10.44512 -10.25786 -9.93219 -9.70855 -9.20823 -8.59436 -8.50202 -8.27396 -7.67627 -6.11477 -4.16423 1.63520 1.74796 3.24271 3.31537 3.34209 3.57687 3.94318 4.35843 4.52516 4.66160 4.97897 5.04870 5.18401 5.21815 5.25882 5.29745 5.34592 5.38817 5.66123 5.75602 5.82937 5.93402 5.98035 6.05003 6.15272 6.30164 6.47514 6.69092 6.75444 6.81486 7.09797 7.32912 7.43484 7.54840 7.82180 8.01331 8.17611 8.29545 8.90316 9.49042 10.99084 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.004255 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.697780 B = 6579.563475 C = 6720.274386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.122 3.878 11 H 0.076 0.924 12 N -0.840 5.840 13 C -0.043 4.043 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.108 4.108 17 C -0.110 4.110 18 C 0.040 3.960 19 O -0.387 6.387 20 C 0.043 3.957 21 C -0.116 4.116 22 C -0.105 4.105 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.328 0.672 27 H 0.346 0.654 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 -15.066 0.123 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.037 4.037 10 C 0.011 3.989 11 H 0.094 0.906 12 N -0.368 5.368 13 C -0.043 4.043 14 C -0.136 4.136 15 C -0.129 4.129 16 C -0.108 4.108 17 C -0.128 4.128 18 C -0.037 4.037 19 O -0.306 6.306 20 C -0.033 4.033 21 C -0.134 4.134 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.140 0.860 27 H 0.160 0.840 28 H 0.138 0.862 29 H 0.134 0.866 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.195 -15.839 0.329 15.844 hybrid contribution -0.146 2.139 -0.065 2.144 sum -0.340 -13.701 0.264 13.707 Atomic orbital electron populations 1.69970 1.06123 1.26792 1.50030 1.25017 0.94822 0.99325 0.95001 0.86581 0.79865 0.83349 0.78151 1.20620 1.21185 1.19781 1.21157 0.92906 0.90814 1.51661 0.92494 1.19790 0.94399 0.91648 0.97863 1.20577 0.94603 0.90759 0.92947 0.90599 1.59277 1.27956 1.45818 1.03778 1.20202 0.95525 0.95717 0.92881 1.21019 0.99969 0.95172 0.97459 1.20900 0.98329 0.96019 0.97617 1.19498 1.00902 0.96340 0.94046 1.23242 0.95094 0.93320 1.01177 1.24139 0.97971 0.83880 0.97677 1.89656 1.20947 1.28605 1.91355 1.24066 0.85355 0.96403 0.97513 1.20874 1.00013 0.95930 0.96577 1.20894 0.97391 0.95278 0.98734 0.92868 0.96458 0.96214 0.86003 0.84033 0.86176 0.86644 0.87635 0.89098 0.89579 0.89804 0.89200 0.86693 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.10 8.55 -34.44 -0.29 -14.40 16 8 H 0.06 1.47 7.15 -52.48 -0.38 1.09 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.09 16 10 C 0.12 2.46 2.99 -68.86 -0.21 2.25 16 11 H 0.08 1.56 8.00 -51.93 -0.42 1.15 16 12 N -0.84 -15.46 9.02 -5.65 -0.05 -15.51 16 13 C -0.04 -0.77 4.96 -104.62 -0.52 -1.29 16 14 C -0.12 -1.91 9.67 -39.58 -0.38 -2.29 16 15 C -0.11 -1.54 9.71 -39.58 -0.38 -1.93 16 16 C -0.11 -1.43 5.31 -104.62 -0.56 -1.98 16 17 C -0.11 -1.19 4.22 -90.69 -0.38 -1.57 16 18 C 0.04 0.43 8.58 37.61 0.32 0.75 16 19 O -0.39 -4.76 12.45 -35.23 -0.44 -5.20 16 20 C 0.04 0.45 8.68 37.61 0.33 0.77 16 21 C -0.12 -1.63 8.63 -39.58 -0.34 -1.97 16 22 C -0.10 -1.72 9.29 -39.58 -0.37 -2.09 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.33 5.76 7.35 -39.29 -0.29 5.47 16 27 H 0.35 6.50 7.90 -39.29 -0.31 6.19 16 28 H 0.12 1.83 8.04 -52.49 -0.42 1.40 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 0.89 6.31 -51.93 -0.33 0.56 16 33 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 1.38 6.65 -52.49 -0.35 1.03 16 36 H 0.12 1.89 6.66 -52.49 -0.35 1.54 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -29.76 299.12 -8.19 -37.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -4.91 Total: 9.92 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.01 Total: -22.26 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.69 Total: -40.88 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.44 Total: -5.20 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.76 -8.19 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.252 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds