Wall clock time and date at job start Mon Mar 30 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86808 * 119.99844 * 2 1 4 4 H 1.48497 * 109.46632 * 269.99700 * 3 2 1 5 5 H 1.48496 * 109.46861 * 29.99334 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99688 * 3 2 1 7 7 C 1.37875 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99999 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00017 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47188 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47103 * 54.99557 * 10 9 7 12 12 N 1.46901 * 109.46963 * 294.99733 * 10 9 7 13 13 C 1.50701 * 109.47202 * 175.00192 * 10 9 7 14 14 C 1.38239 * 119.99820 * 259.99680 * 13 10 9 15 15 C 1.38228 * 120.00236 * 179.97438 * 14 13 10 16 16 C 1.38242 * 119.99760 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99937 * 179.97438 * 16 15 14 18 18 C 1.54038 * 113.81818 * 143.81040 * 17 16 15 19 19 O 1.44178 * 85.51698 * 136.80343 * 18 17 16 20 20 C 1.44176 * 93.34170 * 335.80761 * 19 18 17 21 21 C 1.38234 * 120.00019 * 0.25046 * 16 15 14 22 22 C 1.38228 * 120.00143 * 79.97562 * 13 10 9 23 23 H 0.97003 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47440 * 59.99727 * 9 7 2 25 25 H 1.09002 * 109.47066 * 299.99523 * 9 7 2 26 26 H 1.00901 * 110.99993 * 300.00122 * 12 10 9 27 27 H 1.00904 * 111.00201 * 63.95246 * 12 10 9 28 28 H 1.07999 * 119.99748 * 359.97438 * 14 13 10 29 29 H 1.07993 * 120.00469 * 180.02562 * 15 14 13 30 30 H 1.08999 * 113.08128 * 11.90156 * 17 16 15 31 31 H 1.08997 * 113.86481 * 250.95169 * 18 17 16 32 32 H 1.09002 * 113.86144 * 22.65328 * 18 17 16 33 33 H 1.08997 * 113.86615 * 270.04970 * 20 19 18 34 34 H 1.08997 * 113.86526 * 138.33783 * 20 19 18 35 35 H 1.07997 * 119.99827 * 179.72854 * 21 16 15 36 36 H 1.08002 * 120.00287 * 0.02562 * 22 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9296 -3.5551 0.8423 12 7 3.0084 -3.6538 -1.2547 13 6 1.4961 -4.9636 0.1243 14 6 1.4104 -5.5980 1.3496 15 6 0.7226 -6.7916 1.4633 16 6 0.1209 -7.3513 0.3516 17 6 -0.6284 -8.6529 0.4755 18 6 -1.8821 -8.7362 -0.4156 19 8 -1.4413 -10.0757 -0.7158 20 6 -0.0639 -9.7820 -0.4072 21 6 0.2114 -6.7199 -0.8747 22 6 0.8941 -5.5230 -0.9872 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 2.3961 -3.7516 -2.0507 27 1 3.5701 -2.8191 -1.3311 28 1 1.8808 -5.1610 2.2180 29 1 0.6553 -7.2870 2.4206 30 1 -0.8033 -8.9486 1.5099 31 1 -2.8202 -8.6942 0.1379 32 1 -1.8599 -8.0622 -1.2720 33 1 0.5134 -9.4274 -1.2610 34 1 0.4400 -10.5696 0.1530 35 1 -0.2549 -7.1593 -1.7441 36 1 0.9611 -5.0275 -1.9445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030424.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:32 Heat of formation + Delta-G solvation = -20.962887 kcal Electronic energy + Delta-G solvation = -17279.740565 eV Core-core repulsion = 14535.433015 eV Total energy + Delta-G solvation = -2744.307550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.66813 -39.99463 -37.07905 -34.61386 -32.70906 -31.79285 -29.95386 -29.05424 -27.43558 -26.06450 -23.91029 -23.65669 -21.38843 -20.59884 -18.83473 -17.97638 -17.29306 -16.75352 -16.63264 -16.60733 -16.08229 -15.58062 -15.06722 -14.72579 -14.31722 -14.20307 -14.07385 -13.73804 -13.55632 -13.23384 -13.02400 -12.79824 -12.47893 -12.26552 -12.09133 -11.88342 -11.71079 -11.51407 -11.15759 -10.63283 -10.55875 -9.76691 -9.62949 -9.18970 -8.23505 -6.36157 0.43818 0.56147 1.38983 1.39636 1.50698 2.37386 2.76384 2.80194 3.09611 3.61150 3.73145 3.85280 3.98144 4.15984 4.20015 4.24099 4.30089 4.44562 4.55507 4.62538 4.65703 4.80380 4.85535 4.99434 5.13562 5.16572 5.17333 5.22067 5.33241 5.46746 5.55995 5.68855 5.73348 5.86335 6.12412 6.16295 6.38199 6.69871 6.80407 7.34173 8.87488 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046217 B = 0.004255 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.697780 B = 6579.563475 C = 6720.274386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.013 3.987 10 C 0.137 3.863 11 H 0.068 0.932 12 N -0.828 5.828 13 C -0.074 4.074 14 C -0.132 4.132 15 C -0.109 4.109 16 C -0.097 4.097 17 C -0.107 4.107 18 C 0.037 3.963 19 O -0.406 6.406 20 C 0.044 3.956 21 C -0.115 4.115 22 C -0.119 4.119 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.015 1.015 26 H 0.334 0.666 27 H 0.344 0.656 28 H 0.123 0.877 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 -16.257 0.352 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.026 4.026 10 C 0.025 3.975 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.074 4.074 14 C -0.150 4.150 15 C -0.127 4.127 16 C -0.097 4.097 17 C -0.125 4.125 18 C -0.040 4.040 19 O -0.326 6.326 20 C -0.032 4.032 21 C -0.133 4.133 22 C -0.137 4.137 23 H 0.072 0.928 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.146 0.854 27 H 0.157 0.843 28 H 0.141 0.859 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.127 0.873 35 H 0.154 0.846 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.301 -17.046 0.550 17.058 hybrid contribution -0.342 2.415 -0.139 2.443 sum -0.041 -14.631 0.411 14.637 Atomic orbital electron populations 1.70111 1.07910 1.27751 1.51369 1.25946 0.95632 1.03297 0.94605 0.85453 0.78660 0.78501 0.78464 1.19756 1.21170 1.18653 1.21573 0.93503 0.91762 1.50827 0.91641 1.19648 0.94550 0.93510 0.94873 1.20274 0.93390 0.90514 0.93324 0.91362 1.59273 1.27545 1.45379 1.03439 1.20094 0.97375 0.95526 0.94451 1.21186 1.00698 0.96249 0.96873 1.21223 0.97185 0.95057 0.99227 1.19815 0.99682 0.96911 0.93328 1.23320 0.94848 0.91919 1.02397 1.24257 0.98543 0.83324 0.97827 1.89650 1.21992 1.29370 1.91541 1.24188 0.84796 0.96664 0.97561 1.21106 0.99256 0.94999 0.97951 1.20985 0.98114 0.96398 0.98237 0.92838 0.99023 0.99617 0.85413 0.84298 0.85939 0.83702 0.85931 0.87772 0.89520 0.89711 0.87321 0.84573 0.86550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -29.32 8.55 25.60 0.22 -29.10 16 8 H 0.07 3.37 7.15 -2.91 -0.02 3.35 16 9 C 0.01 0.66 4.60 29.85 0.14 0.80 16 10 C 0.14 5.64 2.99 44.17 0.13 5.77 16 11 H 0.07 2.88 8.00 -2.39 -0.02 2.86 16 12 N -0.83 -30.76 9.02 -171.79 -1.55 -32.31 16 13 C -0.07 -2.69 4.96 -19.87 -0.10 -2.79 16 14 C -0.13 -4.22 9.67 22.27 0.22 -4.01 16 15 C -0.11 -2.82 9.71 22.27 0.22 -2.60 16 16 C -0.10 -2.35 5.31 -19.86 -0.11 -2.45 16 17 C -0.11 -1.97 4.22 -10.84 -0.05 -2.02 16 18 C 0.04 0.69 8.58 72.28 0.62 1.31 16 19 O -0.41 -8.97 12.45 -148.98 -1.86 -10.83 16 20 C 0.04 0.78 8.68 72.27 0.63 1.41 16 21 C -0.12 -3.08 8.63 22.27 0.19 -2.89 16 22 C -0.12 -3.90 9.29 22.27 0.21 -3.69 16 23 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 24 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H 0.33 11.87 7.35 -89.69 -0.66 11.22 16 27 H 0.34 12.94 7.90 -89.69 -0.71 12.23 16 28 H 0.12 3.74 8.04 -2.91 -0.02 3.71 16 29 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 30 H 0.12 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.60 6.31 -2.39 -0.02 1.59 16 33 H 0.08 1.48 7.75 -2.39 -0.02 1.46 16 34 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.14 2.99 6.65 -2.91 -0.02 2.97 16 36 H 0.12 3.76 6.66 -2.91 -0.02 3.74 16 Total: -1.00 -64.40 299.12 1.41 -62.99 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.27 Total: 30.11 kcal Atomic # 6 Polarization: -42.38 SS G_CDS: 2.78 Total: -39.61 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -1.26 Total: -87.94 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.86 Total: -10.83 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -64.40 1.41 -62.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030424.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.025 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds